Wall clock time and date at job start Fri Apr 10 2020 18:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00124 * 2 1 4 4 O 1.20827 * 119.99835 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99846 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46965 * 59.99938 * 5 3 2 7 7 C 1.53005 * 109.47139 * 179.97438 * 5 3 2 8 8 N 1.46501 * 109.46939 * 295.00232 * 7 5 3 9 9 C 1.34781 * 120.00070 * 180.02562 * 8 7 5 10 10 O 1.21278 * 119.99531 * 359.97438 * 9 8 7 11 11 C 1.50693 * 120.00261 * 180.02562 * 9 8 7 12 12 H 1.09005 * 109.47168 * 319.99959 * 11 9 8 13 13 N 1.46901 * 109.47231 * 199.99856 * 11 9 8 14 14 C 1.53006 * 109.47471 * 79.99562 * 11 9 8 15 15 C 1.52999 * 109.46997 * 185.00271 * 14 11 9 16 16 C 1.50706 * 109.46573 * 180.02562 * 15 14 11 17 17 H 1.07995 * 120.00167 * 359.72054 * 16 15 14 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 89.99430 * 20 18 16 22 22 H 1.48494 * 109.47031 * 209.99977 * 20 18 16 23 23 H 1.48504 * 109.46680 * 329.99678 * 20 18 16 24 24 C 1.53001 * 109.47381 * 299.99665 * 5 3 2 25 25 C 1.52997 * 109.46882 * 65.00052 * 24 5 3 26 26 C 1.53004 * 117.49990 * 243.62121 * 25 24 5 27 27 C 1.52999 * 60.00042 * 252.51423 * 26 25 24 28 28 H 1.08996 * 109.47521 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47388 * 300.00664 * 1 2 3 30 30 H 1.09006 * 109.46864 * 60.00131 * 1 2 3 31 31 H 1.08997 * 109.47159 * 175.00046 * 7 5 3 32 32 H 1.08997 * 109.46710 * 54.99980 * 7 5 3 33 33 H 0.97005 * 120.00288 * 359.97438 * 8 7 5 34 34 H 1.00899 * 110.99814 * 176.04311 * 13 11 9 35 35 H 1.00892 * 110.99802 * 299.99727 * 13 11 9 36 36 H 1.09000 * 109.46866 * 65.00059 * 14 11 9 37 37 H 1.09001 * 109.46611 * 305.00176 * 14 11 9 38 38 H 1.09000 * 109.47486 * 60.00167 * 15 14 11 39 39 H 1.09001 * 109.47362 * 299.99445 * 15 14 11 40 40 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.46861 * 185.00205 * 24 5 3 42 42 H 1.08998 * 109.46927 * 305.00375 * 24 5 3 43 43 H 1.09001 * 115.55259 * 29.33349 * 25 24 5 44 44 H 1.08994 * 117.49487 * 0.02562 * 26 25 24 45 45 H 1.09000 * 117.49757 * 145.02211 * 26 25 24 46 46 H 1.09008 * 117.49624 * 252.51114 * 27 26 25 47 47 H 1.08992 * 117.52103 * 107.47981 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9564 0.7805 -0.8892 7 6 4.0002 2.7420 -0.0002 8 7 3.5794 3.3750 -1.2526 9 6 3.8559 4.6750 -1.4768 10 8 4.4526 5.3207 -0.6415 11 6 3.4225 5.3263 -2.7648 12 1 3.5748 4.6327 -3.5918 13 7 4.2177 6.5405 -2.9912 14 6 1.9405 5.6962 -2.6759 15 6 1.4695 6.2428 -4.0251 16 6 0.0100 6.6077 -3.9372 17 1 -0.5289 6.4600 -3.0131 18 6 -0.6386 7.1254 -5.0384 19 7 -1.9124 7.4434 -4.9619 20 14 0.2916 7.3736 -6.6392 21 1 0.1896 6.1447 -7.4667 22 1 -0.2949 8.5192 -7.3799 23 1 1.7195 7.6541 -6.3435 24 6 4.1129 0.5815 1.2502 25 6 3.7858 -0.9118 1.1891 26 6 2.8575 -1.4763 2.2664 27 6 4.3515 -1.8047 2.2954 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 5.0849 2.8002 0.0898 32 1 3.5376 3.2581 0.8411 33 1 3.1024 2.8584 -1.9208 34 1 3.9910 6.9606 -3.8802 35 1 4.0935 7.1998 -2.2376 36 1 1.8014 6.4565 -1.9072 37 1 1.3596 4.8101 -2.4199 38 1 1.6087 5.4825 -4.7937 39 1 2.0504 7.1289 -4.2810 40 1 -2.3688 7.8072 -5.7366 41 1 5.1937 0.7152 1.2965 42 1 3.6545 1.0179 2.1376 43 1 3.7123 -1.3365 0.1880 44 1 2.4794 -0.7837 3.0183 45 1 2.1728 -2.2724 1.9739 46 1 4.6498 -2.8169 2.0220 47 1 4.9570 -1.3282 3.0663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584845858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:45 Heat of formation + Delta-G solvation = -140.133923 kcal Electronic energy + Delta-G solvation = -26497.710242 eV Core-core repulsion = 22679.746559 eV Total energy + Delta-G solvation = -3817.963684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.83395 -40.78001 -38.57780 -37.76919 -37.16283 -36.17561 -34.82911 -33.62361 -32.09821 -29.10195 -28.63200 -27.46894 -25.46255 -24.48612 -23.10593 -22.28673 -21.60773 -21.46272 -20.86884 -19.14557 -18.82697 -18.35292 -17.75296 -17.56476 -16.99964 -16.32585 -16.24725 -16.01321 -15.96091 -15.63838 -15.24933 -14.97110 -14.76006 -14.60537 -14.42756 -14.20843 -13.81729 -13.60448 -13.43487 -13.35522 -13.07849 -12.91852 -12.71674 -12.58119 -12.28699 -12.12938 -12.02821 -11.87115 -11.75411 -11.71206 -11.48099 -11.44036 -11.07055 -10.79415 -10.77701 -10.66989 -10.11205 -9.67626 -8.31801 -6.38056 1.17272 1.36606 1.39453 1.51051 1.60946 1.73908 2.10806 2.35072 3.00466 3.03338 3.35511 3.62289 3.72164 3.73543 3.87623 4.06356 4.09716 4.13502 4.17329 4.17595 4.30727 4.33265 4.38282 4.54466 4.58463 4.62411 4.69078 4.72855 4.77675 4.90147 4.90617 4.95652 4.98304 5.15457 5.33166 5.36502 5.39137 5.41348 5.43904 5.48505 5.60280 6.03725 6.23226 6.46246 6.49212 6.70234 6.74372 7.21242 7.26544 8.85438 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.017017 B = 0.003026 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.022949 B = 9252.192567 C =10455.907916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.341 6.341 3 C 0.457 3.543 4 O -0.536 6.536 5 C -0.077 4.077 6 H 0.146 0.854 7 C 0.134 3.866 8 N -0.715 5.715 9 C 0.526 3.474 10 O -0.572 6.572 11 C 0.081 3.919 12 H 0.122 0.878 13 N -0.827 5.827 14 C -0.117 4.117 15 C -0.004 4.004 16 C -0.538 4.538 17 H 0.020 0.980 18 C 0.000 4.000 19 N -0.954 5.954 20 Si 0.959 3.041 21 H -0.264 1.264 22 H -0.288 1.288 23 H -0.236 1.236 24 C -0.074 4.074 25 C -0.147 4.147 26 C -0.182 4.182 27 C -0.175 4.175 28 H 0.132 0.868 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.100 0.900 32 H 0.050 0.950 33 H 0.407 0.593 34 H 0.355 0.645 35 H 0.344 0.656 36 H 0.037 0.963 37 H 0.054 0.946 38 H 0.031 0.969 39 H 0.029 0.971 40 H 0.267 0.733 41 H 0.109 0.891 42 H 0.064 0.936 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.101 0.899 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.929 -22.872 10.141 29.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.256 6.256 3 C 0.300 3.700 4 O -0.425 6.425 5 C -0.096 4.096 6 H 0.164 0.836 7 C 0.011 3.989 8 N -0.367 5.367 9 C 0.313 3.687 10 O -0.450 6.450 11 C -0.034 4.034 12 H 0.139 0.861 13 N -0.358 5.358 14 C -0.157 4.157 15 C -0.041 4.041 16 C -0.576 4.576 17 H 0.038 0.962 18 C -0.196 4.196 19 N -0.595 5.595 20 Si 0.781 3.219 21 H -0.188 1.188 22 H -0.214 1.214 23 H -0.159 1.159 24 C -0.111 4.111 25 C -0.165 4.165 26 C -0.219 4.219 27 C -0.212 4.212 28 H 0.150 0.850 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.118 0.882 32 H 0.069 0.931 33 H 0.243 0.757 34 H 0.170 0.830 35 H 0.157 0.843 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.128 0.872 42 H 0.082 0.918 43 H 0.133 0.867 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.120 0.880 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 15.629 -22.557 10.701 29.455 hybrid contribution -2.276 0.888 -0.657 2.530 sum 13.353 -21.669 10.044 27.363 Atomic orbital electron populations 1.23434 0.75933 1.05273 1.01792 1.86547 1.23636 1.32070 1.83365 1.24199 0.92806 0.81371 0.71592 1.90799 1.67989 1.37638 1.46095 1.21461 0.86414 0.96709 1.04982 0.83630 1.21292 1.00883 0.90280 0.86475 1.45777 1.59207 1.10796 1.20909 1.20674 0.77673 0.81929 0.88436 1.90619 1.42650 1.63933 1.47836 1.21430 0.91116 0.95022 0.95872 0.86062 1.58770 1.59387 1.09113 1.08548 1.21990 0.94560 1.00388 0.98733 1.19492 0.94000 0.96559 0.94077 1.21437 0.95903 1.42428 0.97787 0.96168 1.26148 0.95680 0.94278 1.03516 1.70098 1.11869 1.45301 1.32189 0.85539 0.80324 0.78246 0.77803 1.18838 1.21382 1.15904 1.21118 1.03017 0.92849 0.94166 1.22224 1.04750 0.93385 0.96144 1.22956 0.93532 1.03679 1.01698 1.23052 0.96070 1.00879 1.01237 0.85023 0.92814 0.93015 0.88219 0.93114 0.75733 0.83027 0.84269 0.94452 0.92745 0.95045 0.95325 0.92458 0.87248 0.91765 0.86652 0.90061 0.88713 0.88022 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.67 16 2 O -0.34 -5.98 8.44 -51.43 -0.43 -6.42 16 3 C 0.46 9.63 6.91 71.24 0.49 10.13 16 4 O -0.54 -16.49 15.04 21.96 0.33 -16.16 16 5 C -0.08 -1.09 2.32 -11.54 -0.03 -1.12 16 6 H 0.15 1.29 8.14 -2.39 -0.02 1.27 16 7 C 0.13 2.77 4.63 86.38 0.40 3.17 16 8 N -0.72 -18.07 4.81 -463.06 -2.23 -20.29 16 9 C 0.53 17.15 7.08 87.65 0.62 17.77 16 10 O -0.57 -22.23 16.25 -3.02 -0.05 -22.28 16 11 C 0.08 2.59 3.21 44.17 0.14 2.74 16 12 H 0.12 3.28 8.14 -2.38 -0.02 3.26 16 13 N -0.83 -26.16 8.94 -171.79 -1.54 -27.70 16 14 C -0.12 -4.68 4.78 30.60 0.15 -4.54 16 15 C 0.00 -0.17 3.81 29.85 0.11 -0.06 16 16 C -0.54 -31.47 9.66 25.60 0.25 -31.22 16 17 H 0.02 1.33 7.99 -2.91 -0.02 1.31 16 18 C 0.00 0.01 5.47 84.66 0.46 0.48 16 19 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 20 Si 0.96 43.31 27.47 68.60 1.88 45.19 16 21 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 22 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 24 C -0.07 -0.79 4.95 30.59 0.15 -0.64 16 25 C -0.15 -1.48 4.12 -10.79 -0.04 -1.53 16 26 C -0.18 -2.07 9.68 30.60 0.30 -1.77 16 27 C -0.18 -1.58 10.25 30.59 0.31 -1.27 16 28 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 0.96 8.13 -2.39 -0.02 0.95 16 30 H 0.05 0.99 8.13 -2.38 -0.02 0.97 16 31 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.05 1.33 7.95 -2.39 -0.02 1.31 16 33 H 0.41 8.97 8.16 -92.70 -0.76 8.21 16 34 H 0.35 10.53 7.55 -89.69 -0.68 9.86 16 35 H 0.34 11.54 8.58 -89.70 -0.77 10.77 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.03 1.32 7.57 -2.39 -0.02 1.30 16 39 H 0.03 1.23 5.93 -2.39 -0.01 1.22 16 40 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 41 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 0.83 7.87 -2.39 -0.02 0.81 16 43 H 0.12 1.08 8.02 -2.39 -0.02 1.06 16 44 H 0.08 1.05 8.03 -2.39 -0.02 1.03 16 45 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 47 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -79.08 386.73 1.51 -77.57 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: -1.27 Total: 36.72 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 4.51 Total: -6.18 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -3.46 Total: -108.45 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -0.15 Total: -44.86 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Total: -79.08 1.51 -77.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584845858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.560 kcal (2) G-P(sol) polarization free energy of solvation -79.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds