Wall clock time and date at job start Fri Apr 10 2020 18:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.62750 * 2 1 4 4 C 1.53247 * 109.62807 * 239.62089 * 2 1 3 5 5 N 1.46904 * 109.33773 * 294.12385 * 4 2 1 6 6 C 1.46897 * 110.99706 * 172.74804 * 5 4 2 7 7 C 1.53004 * 109.47158 * 189.99544 * 6 5 4 8 8 O 1.42899 * 109.46847 * 64.99244 * 7 6 5 9 9 C 1.42902 * 113.99890 * 179.97438 * 8 7 6 10 10 H 1.09010 * 109.47990 * 54.98580 * 9 8 7 11 11 C 1.53090 * 109.48285 * 175.00391 * 9 8 7 12 12 C 1.53181 * 109.16712 * 177.59633 * 11 9 8 13 13 C 1.53180 * 109.03218 * 303.01885 * 12 11 9 14 14 C 1.53096 * 109.16316 * 56.98081 * 13 12 11 15 15 O 1.42901 * 109.48240 * 294.95196 * 9 8 7 16 16 C 1.46906 * 111.26360 * 296.88996 * 5 4 2 17 17 C 1.53234 * 109.33770 * 63.11043 * 16 5 4 18 18 H 1.08996 * 109.63020 * 66.07661 * 17 16 5 19 19 C 1.53008 * 109.62571 * 186.45829 * 17 16 5 20 20 N 1.47082 * 109.62961 * 120.39613 * 2 1 3 21 21 C 1.36930 * 120.87695 * 248.52339 * 20 2 1 22 22 H 1.07999 * 119.99956 * 209.45152 * 21 20 2 23 23 C 1.38814 * 120.00419 * 29.44789 * 21 20 2 24 24 N 1.31618 * 119.99592 * 13.08371 * 23 21 20 25 25 Si 1.86795 * 120.00135 * 193.07888 * 23 21 20 26 26 H 1.48498 * 109.47342 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47060 * 120.00507 * 25 23 21 28 28 H 1.48500 * 109.47240 * 240.00221 * 25 23 21 29 29 H 1.09001 * 109.47160 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47226 * 59.99400 * 1 2 3 31 31 H 1.09000 * 109.46774 * 299.99093 * 1 2 3 32 32 H 1.09005 * 109.49060 * 54.07318 * 4 2 1 33 33 H 1.08995 * 109.49548 * 174.15725 * 4 2 1 34 34 H 1.08996 * 109.47347 * 309.99029 * 6 5 4 35 35 H 1.09000 * 109.47719 * 69.99363 * 6 5 4 36 36 H 1.08993 * 109.47434 * 184.99664 * 7 6 5 37 37 H 1.09001 * 109.46731 * 305.00338 * 7 6 5 38 38 H 1.09001 * 109.52026 * 297.50251 * 11 9 8 39 39 H 1.09006 * 109.52341 * 57.62294 * 11 9 8 40 40 H 1.08995 * 109.54462 * 62.88202 * 12 11 9 41 41 H 1.08997 * 109.54184 * 183.06547 * 12 11 9 42 42 H 1.09005 * 109.52173 * 176.88550 * 13 12 11 43 43 H 1.08997 * 109.52258 * 297.07508 * 13 12 11 44 44 H 1.09005 * 109.48182 * 62.37223 * 14 13 12 45 45 H 1.09002 * 109.48324 * 182.39670 * 14 13 12 46 46 H 1.09000 * 109.48670 * 183.06875 * 16 5 4 47 47 H 1.08998 * 109.49294 * 303.12193 * 16 5 4 48 48 H 1.08990 * 109.47062 * 56.57652 * 19 17 16 49 49 H 1.08999 * 109.46698 * 176.58078 * 19 17 16 50 50 H 1.08999 * 109.46859 * 296.57228 * 19 17 16 51 51 H 0.97000 * 120.00117 * 174.98770 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0448 -0.7300 -1.2452 5 7 1.6745 -2.1493 -1.1649 6 6 1.9977 -2.8492 -2.4154 7 6 1.3789 -4.2483 -2.3914 8 8 -0.0458 -4.1388 -2.3766 9 6 -0.7251 -5.3958 -2.3542 10 1 -0.3697 -5.9861 -1.5095 11 6 -2.2312 -5.1598 -2.2142 12 6 -2.9572 -6.5081 -2.2514 13 6 -2.6007 -7.2316 -3.5537 14 6 -1.0803 -7.3877 -3.6419 15 8 -0.4656 -6.0995 -3.5705 16 6 2.3147 -2.8027 -0.0154 17 6 1.8110 -2.1577 1.2802 18 1 0.7489 -2.3680 1.4051 19 6 2.5898 -2.7204 2.4710 20 7 2.0241 -0.7009 1.1949 21 6 2.6654 -0.0194 2.1945 22 1 3.4121 -0.5177 2.7949 23 6 2.3560 1.3121 2.4361 24 7 1.2831 1.8472 1.8932 25 14 3.4622 2.3441 3.5318 26 1 4.5941 1.5134 4.0154 27 1 3.9887 3.4971 2.7580 28 1 2.6828 2.8422 4.6935 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5137 0.8901 32 1 1.5990 -0.2878 -2.1363 33 1 3.1297 -0.6394 -1.2975 34 1 1.5961 -2.2888 -3.2596 35 1 3.0799 -2.9322 -2.5162 36 1 1.6918 -4.7993 -3.2782 37 1 1.7119 -4.7775 -1.4985 38 1 -2.4354 -4.6622 -1.2662 39 1 -2.5799 -4.5344 -3.0362 40 1 -2.6452 -7.1138 -1.4007 41 1 -4.0338 -6.3439 -2.2070 42 1 -3.0691 -8.2159 -3.5635 43 1 -2.9570 -6.6491 -4.4033 44 1 -0.7295 -8.0042 -2.8142 45 1 -0.8179 -7.8639 -4.5866 46 1 2.0649 -3.8636 -0.0145 47 1 3.3959 -2.6836 -0.0850 48 1 3.6564 -2.5564 2.3177 49 1 2.2721 -2.2163 3.3837 50 1 2.3956 -3.7892 2.5597 51 1 1.0265 2.7550 2.1192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585116104.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:48 Heat of formation + Delta-G solvation = -84.507153 kcal Electronic energy + Delta-G solvation = -28120.922362 eV Core-core repulsion = 24441.203930 eV Total energy + Delta-G solvation = -3679.718431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.66866 -40.07977 -38.03440 -36.21533 -34.63505 -34.21336 -33.32531 -31.53428 -30.13365 -29.16885 -27.66401 -26.18189 -25.60534 -24.76377 -24.16298 -22.35020 -22.19449 -21.16438 -20.33897 -18.43438 -18.06412 -17.65112 -17.17054 -16.73780 -16.48515 -15.90796 -15.75747 -15.64706 -15.36566 -15.24971 -15.11298 -14.67374 -14.42856 -14.18719 -13.81790 -13.64638 -13.59899 -13.29665 -13.18589 -12.99734 -12.79263 -12.71589 -12.32525 -12.22220 -12.19275 -12.19095 -12.12027 -12.06439 -11.88405 -11.75074 -11.60713 -11.44253 -11.18979 -10.95228 -10.70077 -10.43299 -10.42480 -9.10828 -8.44650 -7.75669 -5.20304 1.47024 1.49686 1.58381 2.40079 2.55122 3.02039 3.05120 3.39017 3.63420 3.83361 3.87754 3.95281 4.02894 4.10446 4.18134 4.19495 4.32652 4.34073 4.46974 4.52198 4.55469 4.63346 4.65051 4.65550 4.71553 4.80545 4.81267 4.86971 4.87842 4.91106 4.93182 5.02006 5.04701 5.11969 5.12702 5.13933 5.29328 5.35637 5.35852 5.44958 5.57231 5.74500 5.80517 6.03477 6.12954 6.28018 6.31397 6.43641 6.54098 7.27990 7.97233 8.53448 9.30820 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.025928 B = 0.003064 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.640070 B = 9137.525098 C = 9212.855933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.198 3.802 3 H 0.056 0.944 4 C 0.055 3.945 5 N -0.530 5.530 6 C 0.056 3.944 7 C 0.076 3.924 8 O -0.371 6.371 9 C 0.252 3.748 10 H 0.056 0.944 11 C -0.140 4.140 12 C -0.117 4.117 13 C -0.155 4.155 14 C 0.063 3.937 15 O -0.429 6.429 16 C 0.059 3.941 17 C 0.165 3.835 18 H 0.014 0.986 19 C -0.128 4.128 20 N -0.601 5.601 21 C -0.249 4.249 22 H 0.070 0.930 23 C -0.049 4.049 24 N -0.926 5.926 25 Si 0.959 3.041 26 H -0.270 1.270 27 H -0.296 1.296 28 H -0.296 1.296 29 H 0.033 0.967 30 H 0.030 0.970 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.015 0.985 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.109 0.891 46 H 0.084 0.916 47 H 0.022 0.978 48 H 0.047 0.953 49 H 0.043 0.957 50 H 0.074 0.926 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.193 -20.178 -10.820 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 H 0.074 0.926 4 C -0.074 4.074 5 N -0.254 5.254 6 C -0.072 4.072 7 C -0.001 4.001 8 O -0.290 6.290 9 C 0.156 3.844 10 H 0.073 0.927 11 C -0.178 4.178 12 C -0.154 4.154 13 C -0.193 4.193 14 C -0.013 4.013 15 O -0.351 6.351 16 C -0.070 4.070 17 C 0.059 3.941 18 H 0.032 0.968 19 C -0.186 4.186 20 N -0.325 5.325 21 C -0.379 4.379 22 H 0.087 0.913 23 C -0.245 4.245 24 N -0.572 5.572 25 Si 0.789 3.211 26 H -0.194 1.194 27 H -0.223 1.223 28 H -0.223 1.223 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.033 0.967 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.118 0.882 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.127 0.873 46 H 0.102 0.898 47 H 0.040 0.960 48 H 0.066 0.934 49 H 0.063 0.937 50 H 0.092 0.908 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.674 -19.780 -10.905 23.066 hybrid contribution 1.162 1.015 0.762 1.720 sum -3.513 -18.766 -10.143 21.619 Atomic orbital electron populations 1.21710 0.97945 0.98565 0.99045 1.20238 0.92514 0.94410 0.83685 0.92571 1.22568 0.96623 0.88849 0.99373 1.61838 1.59051 1.01804 1.02727 1.22175 0.97925 0.94352 0.92706 1.22521 0.80367 0.96530 1.00668 1.88156 1.19406 1.27417 1.94043 1.23047 0.92422 0.82854 0.86049 0.92664 1.22006 0.92904 0.99592 1.03266 1.21606 1.01116 0.94250 0.98458 1.22228 0.96485 1.02498 0.98078 1.22758 0.92398 0.82643 1.03474 1.87771 1.74302 1.32368 1.40659 1.22535 0.95196 0.98100 0.91170 1.20697 0.95887 0.84182 0.93357 0.96798 1.21708 0.99533 0.99892 0.97492 1.44587 1.67046 1.02517 1.18386 1.19465 1.13960 0.93464 1.11001 0.91258 1.25766 0.97973 0.99779 1.00945 1.70119 1.25315 1.14723 1.47087 0.85316 0.78782 0.78801 0.78206 1.19429 1.22283 1.22292 0.94774 0.95126 0.94323 0.91034 0.96696 0.90429 0.92610 0.91407 0.92817 0.90705 0.91604 0.90672 0.89731 0.88238 0.91581 0.92046 0.87281 0.89770 0.96028 0.93358 0.93744 0.90755 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.52 8.95 71.98 0.64 -4.88 16 2 C 0.20 9.72 2.33 44.96 0.10 9.83 16 3 H 0.06 3.17 6.20 -2.39 -0.01 3.15 16 4 C 0.06 2.24 5.01 86.39 0.43 2.67 16 5 N -0.53 -19.10 4.07 -895.23 -3.65 -22.74 16 6 C 0.06 1.63 5.35 86.31 0.46 2.09 16 7 C 0.08 1.98 5.86 71.98 0.42 2.41 16 8 O -0.37 -11.24 10.22 -126.21 -1.29 -12.53 16 9 C 0.25 6.10 3.20 72.01 0.23 6.33 16 10 H 0.06 1.23 8.14 -2.38 -0.02 1.22 16 11 C -0.14 -3.00 5.79 30.68 0.18 -2.83 16 12 C -0.12 -1.68 6.03 30.71 0.19 -1.50 16 13 C -0.16 -1.93 6.14 30.69 0.19 -1.74 16 14 C 0.06 0.92 6.84 72.01 0.49 1.41 16 15 O -0.43 -9.90 10.03 -126.21 -1.27 -11.17 16 16 C 0.06 2.10 4.76 86.38 0.41 2.51 16 17 C 0.16 6.96 3.25 44.89 0.15 7.11 16 18 H 0.01 0.66 7.63 -2.39 -0.02 0.64 16 19 C -0.13 -4.74 7.97 71.98 0.57 -4.17 16 20 N -0.60 -30.29 2.74 -649.72 -1.78 -32.07 16 21 C -0.25 -13.52 8.64 84.04 0.73 -12.80 16 22 H 0.07 3.67 6.31 -2.91 -0.02 3.66 16 23 C -0.05 -2.75 5.01 84.86 0.43 -2.33 16 24 N -0.93 -54.27 9.64 21.65 0.21 -54.06 16 25 Si 0.96 45.42 29.58 68.60 2.03 47.45 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 27 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 28 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 29 H 0.03 1.61 7.07 -2.39 -0.02 1.60 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 2.11 6.79 -2.39 -0.02 2.10 16 32 H 0.07 2.70 7.99 -2.38 -0.02 2.68 16 33 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 2.26 7.97 -2.39 -0.02 2.24 16 35 H 0.06 1.47 8.12 -2.39 -0.02 1.45 16 36 H 0.07 1.61 7.74 -2.39 -0.02 1.59 16 37 H 0.05 1.33 6.19 -2.39 -0.01 1.32 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 45 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.08 2.56 6.07 -2.39 -0.01 2.54 16 47 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.05 1.78 7.73 -2.39 -0.02 1.76 16 49 H 0.04 1.80 7.41 -2.39 -0.02 1.78 16 50 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 51 H 0.25 14.09 8.32 -92.71 -0.77 13.32 16 Total: -1.00 -65.34 380.12 0.75 -64.59 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.87 Total: 16.42 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 5.62 Total: 4.11 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -5.22 Total: -108.88 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -2.56 Total: -23.69 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -65.34 0.75 -64.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585116104.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.914 kcal (2) G-P(sol) polarization free energy of solvation -65.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds