Wall clock time and date at job start Fri Apr 10 2020 18:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.62709 * 2 1 4 4 C 1.53238 * 109.79129 * 239.51738 * 2 1 3 5 5 N 1.46898 * 109.34061 * 186.36298 * 4 2 1 6 6 C 1.46901 * 111.00221 * 187.25034 * 5 4 2 7 7 C 1.52998 * 109.47050 * 284.75760 * 6 5 4 8 8 O 1.42895 * 109.47594 * 65.59461 * 7 6 5 9 9 C 1.42901 * 114.00539 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.47985 * 309.98237 * 9 8 7 11 11 C 1.53087 * 109.48129 * 189.94504 * 9 8 7 12 12 C 1.53179 * 109.16166 * 182.41250 * 11 9 8 13 13 C 1.53180 * 109.04079 * 56.97482 * 12 11 9 14 14 C 1.53089 * 109.16420 * 303.02655 * 13 12 11 15 15 O 1.42900 * 109.41929 * 57.60300 * 14 13 12 16 16 C 1.46899 * 111.27178 * 63.10172 * 5 4 2 17 17 C 1.53699 * 109.25877 * 296.76063 * 16 5 4 18 18 H 1.08997 * 109.79311 * 294.42137 * 17 16 5 19 19 C 1.52993 * 109.70630 * 173.68403 * 17 16 5 20 20 N 1.47077 * 108.27697 * 54.07512 * 17 16 5 21 21 C 1.36938 * 120.88225 * 128.75740 * 20 17 16 22 22 H 1.08002 * 120.00131 * 305.46150 * 21 20 17 23 23 C 1.38812 * 120.00048 * 125.45483 * 21 20 17 24 24 N 1.31623 * 120.00029 * 343.47867 * 23 21 20 25 25 Si 1.86797 * 120.00045 * 163.47724 * 23 21 20 26 26 H 1.48501 * 109.47383 * 180.02562 * 25 23 21 27 27 H 1.48506 * 109.47046 * 300.00347 * 25 23 21 28 28 H 1.48500 * 109.47199 * 59.99839 * 25 23 21 29 29 H 1.08997 * 109.47814 * 299.61032 * 1 2 3 30 30 H 1.08999 * 109.47265 * 59.61582 * 1 2 3 31 31 H 1.09007 * 109.46751 * 179.61100 * 1 2 3 32 32 H 1.09005 * 109.49289 * 306.32266 * 4 2 1 33 33 H 1.08993 * 109.49527 * 66.40419 * 4 2 1 34 34 H 1.08999 * 109.47158 * 44.75261 * 6 5 4 35 35 H 1.09001 * 109.47589 * 164.75541 * 6 5 4 36 36 H 1.09000 * 109.47056 * 185.59684 * 7 6 5 37 37 H 1.09003 * 109.46885 * 305.59142 * 7 6 5 38 38 H 1.08998 * 109.52094 * 302.31089 * 11 9 8 39 39 H 1.08996 * 109.52570 * 62.50794 * 11 9 8 40 40 H 1.09002 * 109.54044 * 297.11392 * 12 11 9 41 41 H 1.09000 * 109.54591 * 176.84968 * 12 11 9 42 42 H 1.08997 * 109.52620 * 183.11639 * 13 12 11 43 43 H 1.09005 * 109.51558 * 62.92635 * 13 12 11 44 44 H 1.09005 * 109.47679 * 297.62149 * 14 13 12 45 45 H 1.09002 * 109.49207 * 177.59586 * 14 13 12 46 46 H 1.09003 * 109.48987 * 56.85025 * 16 5 4 47 47 H 1.08998 * 109.49879 * 176.93237 * 16 5 4 48 48 H 1.09006 * 109.47404 * 297.55347 * 19 17 16 49 49 H 1.09006 * 109.47215 * 57.55066 * 19 17 16 50 50 H 1.09000 * 109.47590 * 177.54883 * 19 17 16 51 51 H 0.96995 * 119.99504 * 175.44483 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0268 0.0000 4 6 2.0488 -0.7314 -1.2426 5 7 3.5097 -0.8594 -1.1572 6 6 4.0647 -1.4003 -2.4051 7 6 3.7766 -2.9009 -2.4831 8 8 2.3670 -3.1107 -2.5882 9 6 1.9883 -4.4863 -2.6681 10 1 2.5810 -4.9824 -3.4367 11 6 0.5028 -4.5870 -3.0242 12 6 0.0906 -6.0620 -3.0487 13 6 0.4064 -6.6919 -1.6886 14 6 1.8956 -6.5098 -1.3842 15 8 2.2185 -5.1179 -1.4071 16 6 3.9063 -1.6803 -0.0054 17 6 3.4645 -0.9824 1.2908 18 1 4.0129 -0.0483 1.4124 19 6 3.7306 -1.8987 2.4867 20 7 2.0241 -0.7007 1.1950 21 6 1.1666 -1.0759 2.1945 22 1 1.1361 -2.1046 2.5221 23 6 0.3365 -0.1341 2.7869 24 7 0.5851 1.1497 2.6363 25 14 -1.1332 -0.6885 3.7977 26 1 -1.8538 0.5014 4.3175 27 1 -2.0487 -1.4869 2.9434 28 1 -0.6660 -1.5209 4.9353 29 1 -0.3634 0.5077 0.8934 30 1 -0.3634 0.5198 -0.8865 31 1 -0.3633 -1.0277 -0.0070 32 1 1.5992 -1.7231 -1.2951 33 1 1.7850 -0.1643 -2.1351 34 1 3.6043 -0.8974 -3.2555 35 1 5.1420 -1.2357 -2.4252 36 1 4.2727 -3.3212 -3.3580 37 1 4.1507 -3.3899 -1.5836 38 1 -0.0875 -4.0562 -2.2773 39 1 0.3327 -4.1449 -4.0058 40 1 0.6454 -6.5827 -3.8293 41 1 -0.9786 -6.1386 -3.2466 42 1 0.1674 -7.7550 -1.7152 43 1 -0.1859 -6.2036 -0.9148 44 1 2.4869 -7.0325 -2.1361 45 1 2.1179 -6.9183 -0.3984 46 1 3.4308 -2.6587 -0.0751 47 1 4.9896 -1.8014 -0.0007 48 1 3.1362 -2.8071 2.3878 49 1 4.7888 -2.1586 2.5170 50 1 3.4564 -1.3836 3.4073 51 1 -0.0309 1.8081 2.9939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585116105.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:50 Heat of formation + Delta-G solvation = -83.963819 kcal Electronic energy + Delta-G solvation = -29266.918249 eV Core-core repulsion = 25587.223379 eV Total energy + Delta-G solvation = -3679.694871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.83352 -40.02129 -38.09850 -36.27538 -34.67757 -34.37920 -33.36942 -31.51697 -30.06371 -29.00607 -27.43842 -26.67520 -25.73149 -24.64409 -24.18909 -22.22308 -21.85452 -21.31262 -20.59248 -18.46983 -18.04187 -17.75159 -17.03243 -16.83148 -16.42767 -16.07979 -15.99001 -15.78472 -15.56525 -15.26786 -14.97713 -14.67395 -14.26146 -14.06273 -13.83905 -13.67692 -13.53072 -13.30910 -13.23522 -13.02362 -12.91821 -12.60915 -12.52595 -12.32629 -12.30896 -12.18159 -12.16083 -12.01103 -11.91754 -11.82156 -11.58947 -11.46026 -11.39276 -11.09550 -10.70333 -10.46040 -10.05863 -9.03532 -8.29230 -7.60416 -5.56862 1.43543 1.45250 1.51763 2.34820 2.50465 2.98985 3.21494 3.28819 3.64836 3.76161 3.83847 3.94858 3.97604 4.04469 4.16271 4.24863 4.33438 4.39560 4.41648 4.46635 4.54656 4.61093 4.68828 4.73123 4.75825 4.77244 4.81685 4.85197 4.89984 4.95299 4.99201 4.99686 5.02725 5.06266 5.09245 5.09930 5.20480 5.30915 5.32170 5.50985 5.56025 5.71562 5.82935 5.88750 6.04917 6.33009 6.36757 6.41594 6.62523 7.30631 7.87821 8.63243 9.19303 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.012376 B = 0.005338 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.886296 B = 5243.982532 C = 6204.380851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.196 3.804 3 H -0.005 1.005 4 C 0.063 3.937 5 N -0.542 5.542 6 C 0.057 3.943 7 C 0.027 3.973 8 O -0.377 6.377 9 C 0.250 3.750 10 H 0.068 0.932 11 C -0.141 4.141 12 C -0.112 4.112 13 C -0.159 4.159 14 C 0.065 3.935 15 O -0.433 6.433 16 C 0.064 3.936 17 C 0.163 3.837 18 H 0.005 0.995 19 C -0.115 4.115 20 N -0.591 5.591 21 C -0.255 4.255 22 H 0.037 0.963 23 C -0.005 4.005 24 N -0.909 5.909 25 Si 0.936 3.064 26 H -0.290 1.290 27 H -0.277 1.277 28 H -0.274 1.274 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.051 0.949 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.026 0.974 47 H 0.080 0.920 48 H 0.041 0.959 49 H 0.070 0.930 50 H 0.036 0.964 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.411 -15.397 -14.466 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.090 3.910 3 H 0.012 0.988 4 C -0.066 4.066 5 N -0.265 5.265 6 C -0.071 4.071 7 C -0.051 4.051 8 O -0.296 6.296 9 C 0.155 3.845 10 H 0.085 0.915 11 C -0.179 4.179 12 C -0.150 4.150 13 C -0.197 4.197 14 C -0.010 4.010 15 O -0.355 6.355 16 C -0.066 4.066 17 C 0.057 3.943 18 H 0.022 0.978 19 C -0.173 4.173 20 N -0.316 5.316 21 C -0.386 4.386 22 H 0.055 0.945 23 C -0.204 4.204 24 N -0.551 5.551 25 Si 0.763 3.237 26 H -0.215 1.215 27 H -0.203 1.203 28 H -0.200 1.200 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.120 0.880 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.115 0.885 46 H 0.044 0.956 47 H 0.098 0.902 48 H 0.060 0.940 49 H 0.089 0.911 50 H 0.055 0.945 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.506 -14.510 -14.125 20.745 hybrid contribution -1.249 -0.732 0.607 1.570 sum 3.257 -15.242 -13.518 20.632 Atomic orbital electron populations 1.21855 0.96160 0.99825 1.01285 1.20244 0.92714 0.92235 0.85791 0.98751 1.22567 0.87355 0.99445 0.97255 1.62035 1.11198 1.50055 1.03165 1.22480 1.01565 0.90652 0.92437 1.23386 0.81359 0.99321 1.01021 1.88136 1.24465 1.23600 1.93446 1.23121 0.95303 0.81131 0.84964 0.91480 1.22041 0.94131 0.98948 1.02741 1.21580 1.02928 0.92925 0.97522 1.22240 0.96747 1.02851 0.97813 1.22699 0.95302 0.79818 1.03221 1.87865 1.86936 1.24905 1.35817 1.22519 0.99112 0.94095 0.90832 1.20796 0.85709 0.94498 0.93293 0.97752 1.21531 0.99987 0.98479 0.97295 1.44193 1.01506 1.68233 1.17662 1.18680 1.16908 0.90942 1.12091 0.94542 1.26079 1.02246 0.95141 0.96894 1.70249 1.35791 1.00473 1.48540 0.85879 0.80982 0.77346 0.79478 1.21547 1.20296 1.19982 0.91329 0.93847 0.95027 0.93858 0.92127 0.89970 0.87234 0.90934 0.93335 0.93136 0.89276 0.89613 0.89798 0.88032 0.92990 0.91169 0.88538 0.95583 0.90175 0.94020 0.91109 0.94451 0.94039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.62 8.12 71.98 0.58 -6.03 16 2 C 0.20 9.92 3.12 44.96 0.14 10.06 16 3 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 4 C 0.06 2.66 4.36 86.38 0.38 3.03 16 5 N -0.54 -20.31 4.83 -894.32 -4.32 -24.63 16 6 C 0.06 1.57 6.00 86.30 0.52 2.08 16 7 C 0.03 0.71 5.40 71.98 0.39 1.10 16 8 O -0.38 -11.73 7.44 -126.21 -0.94 -12.67 16 9 C 0.25 6.55 3.16 72.01 0.23 6.77 16 10 H 0.07 1.41 8.09 -2.38 -0.02 1.39 16 11 C -0.14 -3.29 5.79 30.68 0.18 -3.12 16 12 C -0.11 -1.87 6.03 30.71 0.19 -1.68 16 13 C -0.16 -2.87 6.14 30.68 0.19 -2.69 16 14 C 0.07 1.33 6.84 72.01 0.49 1.83 16 15 O -0.43 -12.94 10.25 -126.21 -1.29 -14.23 16 16 C 0.06 2.46 3.93 86.54 0.34 2.80 16 17 C 0.16 7.59 3.67 45.11 0.17 7.76 16 18 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 19 C -0.11 -4.85 8.22 71.98 0.59 -4.26 16 20 N -0.59 -31.38 2.80 -649.81 -1.82 -33.19 16 21 C -0.26 -14.46 6.95 84.03 0.58 -13.88 16 22 H 0.04 2.14 7.11 -2.91 -0.02 2.12 16 23 C -0.01 -0.29 3.34 84.86 0.28 -0.01 16 24 N -0.91 -54.45 11.77 21.65 0.25 -54.20 16 25 Si 0.94 45.26 29.59 68.60 2.03 47.29 16 26 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 27 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 28 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 29 H 0.07 3.78 4.47 -2.39 -0.01 3.77 16 30 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.03 1.56 8.00 -2.38 -0.02 1.55 16 32 H 0.04 1.96 5.84 -2.38 -0.01 1.95 16 33 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 34 H 0.08 2.16 7.86 -2.39 -0.02 2.15 16 35 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.44 5.87 -2.39 -0.01 1.43 16 38 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 44 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.03 1.10 6.56 -2.39 -0.02 1.08 16 47 H 0.08 2.63 8.11 -2.39 -0.02 2.61 16 48 H 0.04 1.80 7.43 -2.38 -0.02 1.78 16 49 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 50 H 0.04 1.72 7.81 -2.39 -0.02 1.70 16 51 H 0.25 14.52 8.32 -92.71 -0.77 13.75 16 Total: -1.00 -69.16 376.44 0.03 -69.13 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.87 Total: 18.72 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 5.24 Total: 3.78 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -5.88 Total: -112.02 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -2.23 Total: -26.90 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -69.16 0.03 -69.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585116105.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.833 kcal (2) G-P(sol) polarization free energy of solvation -69.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds