Wall clock time and date at job start Fri Apr 10 2020 18:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47130 * 2 1 4 4 C 1.53000 * 109.47130 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47361 * 180.02562 * 4 3 2 6 6 O 1.42894 * 109.47187 * 180.02562 * 5 4 3 7 7 C 1.42901 * 113.99996 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47418 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99554 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99837 * 180.02562 * 8 7 6 11 11 C 1.46973 * 120.58995 * 180.02562 * 10 8 7 12 12 C 1.53368 * 108.63183 * 235.20134 * 11 10 8 13 13 H 1.08997 * 109.60602 * 70.32323 * 12 11 10 14 14 C 1.53006 * 109.60687 * 190.83179 * 12 11 10 15 15 N 1.46965 * 108.63858 * 310.57713 * 12 11 10 16 16 C 1.36942 * 120.59276 * 235.25139 * 15 12 11 17 17 H 1.08004 * 119.99972 * 54.29344 * 16 15 12 18 18 C 1.38809 * 119.99842 * 234.29641 * 16 15 12 19 19 N 1.31622 * 120.00055 * 20.01356 * 18 16 15 20 20 Si 1.86796 * 119.99906 * 200.01679 * 18 16 15 21 21 H 1.48501 * 109.47210 * 90.00085 * 20 18 16 22 22 H 1.48505 * 109.47098 * 209.99949 * 20 18 16 23 23 H 1.48495 * 109.47303 * 329.99651 * 20 18 16 24 24 C 1.46961 * 118.81330 * 55.22340 * 15 12 11 25 25 H 1.09002 * 109.60762 * 64.69189 * 24 15 12 26 26 C 1.53001 * 109.61143 * 185.03033 * 24 15 12 27 27 C 1.46961 * 120.59977 * 359.72157 * 10 8 7 28 28 H 1.09002 * 109.47000 * 59.99556 * 1 2 3 29 29 H 1.08996 * 109.47313 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47198 * 300.00008 * 1 2 3 31 31 H 1.09004 * 109.46864 * 240.00397 * 2 1 3 32 32 H 1.09000 * 109.47431 * 120.00141 * 2 1 3 33 33 H 1.09004 * 109.46923 * 60.00433 * 3 2 1 34 34 H 1.09000 * 109.47078 * 300.00357 * 3 2 1 35 35 H 1.09004 * 109.46864 * 60.00397 * 4 3 2 36 36 H 1.09002 * 109.47000 * 300.00444 * 4 3 2 37 37 H 1.09000 * 109.46716 * 300.00276 * 5 4 3 38 38 H 1.09001 * 109.47218 * 59.99702 * 5 4 3 39 39 H 1.09004 * 109.47336 * 300.00473 * 7 6 5 40 40 H 1.09001 * 109.47173 * 60.00154 * 7 6 5 41 41 H 1.09000 * 109.61066 * 354.94805 * 11 10 8 42 42 H 1.09001 * 109.61080 * 115.45862 * 11 10 8 43 43 H 1.08997 * 109.46896 * 60.00348 * 14 12 11 44 44 H 1.09000 * 109.46653 * 180.02562 * 14 12 11 45 45 H 1.08996 * 109.47072 * 299.99692 * 14 12 11 46 46 H 0.96996 * 120.00155 * 182.19821 * 19 18 16 47 47 H 1.08994 * 109.46788 * 51.97215 * 26 24 15 48 48 H 1.09002 * 109.46629 * 171.96901 * 26 24 15 49 49 H 1.08995 * 109.47196 * 291.96824 * 26 24 15 50 50 H 1.09004 * 109.61120 * 244.54530 * 27 10 8 51 51 H 1.09005 * 109.60567 * 5.05354 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8850 0.0000 6 8 5.5090 2.8850 -0.0012 7 6 6.0903 4.1904 -0.0013 8 6 7.5926 4.0714 -0.0020 9 8 8.1141 2.9765 -0.0028 10 7 8.3565 5.1818 -0.0017 11 6 9.8227 5.0809 -0.0029 12 6 10.3694 5.8737 1.1908 13 1 10.1233 5.3556 2.1176 14 6 11.8879 6.0119 1.0632 15 7 9.7512 7.2070 1.1918 16 6 10.5274 8.3352 1.1912 17 1 11.2823 8.4708 0.4308 18 6 10.3440 9.3043 2.1678 19 7 9.7356 8.9971 3.2938 20 14 10.9606 11.0446 1.8841 21 1 9.8928 11.8488 1.2373 22 1 11.3235 11.6597 3.1862 23 1 12.1557 11.0089 1.0034 24 6 8.2850 7.3079 1.1930 25 1 7.8907 6.8947 2.1213 26 6 7.8712 8.7755 1.0676 27 6 7.7383 6.5150 -0.0068 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6766 1.9564 -0.8900 35 1 3.9329 0.9289 -0.8909 36 1 3.9337 0.9285 0.8891 37 1 3.7163 3.3993 -0.8895 38 1 3.7171 3.3983 0.8904 39 1 5.7679 4.7317 -0.8908 40 1 5.7694 4.7311 0.8891 41 1 10.1175 4.0353 0.0865 42 1 10.2173 5.4969 -0.9299 43 1 12.1285 6.5371 0.1390 44 1 12.2740 6.5752 1.9128 45 1 12.3427 5.0215 1.0475 46 1 9.5790 9.6816 3.9630 47 1 8.3769 9.2238 0.2124 48 1 6.7923 8.8378 0.9253 49 1 8.1494 9.3103 1.9756 50 1 7.9881 7.0306 -0.9342 51 1 6.6562 6.4168 0.0800 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585127154.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:08 Heat of formation + Delta-G solvation = -72.218572 kcal Electronic energy + Delta-G solvation = -26973.688357 eV Core-core repulsion = 23294.502799 eV Total energy + Delta-G solvation = -3679.185558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.78163 -38.08937 -37.09836 -35.84609 -34.17244 -33.07321 -31.66624 -31.24911 -28.66146 -27.66569 -26.22650 -25.73462 -25.12303 -23.50616 -22.13539 -21.29774 -20.41742 -19.88112 -18.74189 -17.18029 -16.66698 -16.43462 -15.95710 -15.61788 -15.45126 -14.89071 -14.60043 -14.45720 -14.24674 -13.92025 -13.69500 -13.50845 -13.22788 -13.05143 -12.63983 -12.53957 -12.08592 -12.05231 -11.62682 -11.58030 -11.53135 -11.34917 -11.33820 -11.27927 -11.04738 -10.95749 -10.81491 -10.76805 -10.55510 -10.48729 -10.39365 -10.09450 -9.95291 -9.74894 -9.72050 -9.26901 -8.39427 -8.02791 -6.44296 -5.81078 -3.64223 2.93662 3.00758 3.26753 3.36124 3.37408 3.90398 4.36549 4.60774 4.61743 4.77603 4.84570 4.90779 5.05346 5.10346 5.17510 5.23021 5.23184 5.24866 5.31976 5.44916 5.48070 5.58465 5.66623 5.70380 5.72643 5.76285 5.88825 5.94238 6.00475 6.03672 6.08603 6.09026 6.16776 6.34087 6.41498 6.52755 6.55582 6.66058 6.78665 6.89498 7.08342 7.10475 7.25662 7.33785 7.59147 7.78206 7.88509 8.54232 8.55826 9.11175 9.63355 10.41646 11.08574 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.024033 B = 0.002540 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.788580 B =11021.498087 C =11814.349190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.119 4.119 5 C 0.060 3.940 6 O -0.365 6.365 7 C 0.048 3.952 8 C 0.511 3.489 9 O -0.538 6.538 10 N -0.597 5.597 11 C 0.101 3.899 12 C 0.156 3.844 13 H 0.030 0.970 14 C -0.126 4.126 15 N -0.576 5.576 16 C -0.265 4.265 17 H 0.054 0.946 18 C 0.037 3.963 19 N -0.873 5.873 20 Si 0.884 3.116 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.274 1.274 24 C 0.182 3.818 25 H 0.033 0.967 26 C -0.145 4.145 27 C 0.085 3.915 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.037 0.963 46 H 0.255 0.745 47 H 0.053 0.947 48 H 0.023 0.977 49 H 0.092 0.908 50 H 0.068 0.932 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.857 -9.214 -6.621 17.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.156 4.156 5 C -0.017 4.017 6 O -0.283 6.283 7 C -0.032 4.032 8 C 0.298 3.702 9 O -0.415 6.415 10 N -0.330 5.330 11 C -0.022 4.022 12 C 0.049 3.951 13 H 0.047 0.953 14 C -0.184 4.184 15 N -0.300 5.300 16 C -0.394 4.394 17 H 0.072 0.928 18 C -0.165 4.165 19 N -0.512 5.512 20 Si 0.712 3.288 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.199 1.199 24 C 0.075 3.925 25 H 0.051 0.949 26 C -0.203 4.203 27 C -0.040 4.040 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.042 0.958 49 H 0.110 0.890 50 H 0.086 0.914 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.467 -9.882 -6.433 17.900 hybrid contribution -0.050 1.413 -0.007 1.414 sum -13.517 -8.470 -6.440 17.203 Atomic orbital electron populations 1.21780 0.95874 1.01585 1.01803 1.21519 0.95767 0.96663 1.02297 1.21538 0.94459 0.97214 1.02265 1.21518 0.94904 0.95543 1.03658 1.22572 0.80974 0.98014 1.00166 1.87989 1.19134 1.25751 1.95413 1.22234 0.92421 0.86273 1.02278 1.20115 0.88386 0.84446 0.77285 1.90664 1.74499 1.26313 1.50027 1.47975 1.07322 1.05739 1.71963 1.22323 0.78160 1.01352 1.00376 1.20887 0.92793 0.87812 0.93584 0.95276 1.21633 0.94787 0.99232 1.02769 1.43943 0.99563 1.00134 1.86372 1.18667 1.17372 0.96091 1.07311 0.92832 1.25579 0.97523 0.99577 0.93855 1.70157 1.43563 1.32296 1.05173 0.86617 0.79239 0.85500 0.77404 1.20805 1.21637 1.19936 1.20692 0.85402 0.94069 0.92335 0.94942 1.22013 0.96421 0.96750 1.05072 1.22805 0.96148 0.82817 1.02186 0.92780 0.92796 0.92732 0.91899 0.91847 0.91760 0.91838 0.91028 0.90948 0.93359 0.93206 0.90648 0.90310 0.90100 0.91961 0.92839 0.91446 0.94387 0.93480 0.92807 0.95811 0.88981 0.91413 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.12 -0.87 5.93 -26.73 -0.16 -1.02 16 3 C -0.12 -0.87 5.21 -26.73 -0.14 -1.01 16 4 C -0.12 -1.14 5.58 -26.73 -0.15 -1.29 16 5 C 0.06 0.65 5.94 37.16 0.22 0.87 16 6 O -0.36 -5.58 9.88 -55.14 -0.54 -6.13 16 7 C 0.05 0.69 4.76 36.01 0.17 0.86 16 8 C 0.51 9.46 7.77 -10.99 -0.09 9.38 16 9 O -0.54 -11.85 15.90 -14.35 -0.23 -12.08 16 10 N -0.60 -10.97 2.94 -172.19 -0.51 -11.48 16 11 C 0.10 1.94 5.90 -3.59 -0.02 1.91 16 12 C 0.16 3.31 3.65 -67.48 -0.25 3.06 16 13 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 14 C -0.13 -2.45 8.18 37.16 0.30 -2.14 16 15 N -0.58 -13.32 2.74 -156.74 -0.43 -13.75 16 16 C -0.26 -6.58 6.61 -15.06 -0.10 -6.68 16 17 H 0.05 1.36 7.18 -52.48 -0.38 0.99 16 18 C 0.04 0.94 3.31 -17.43 -0.06 0.89 16 19 N -0.87 -23.46 11.71 55.49 0.65 -22.81 16 20 Si 0.88 19.95 29.60 -169.99 -5.03 14.92 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 24 C 0.18 3.83 3.26 -67.24 -0.22 3.61 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 C -0.14 -2.98 7.85 37.16 0.29 -2.68 16 27 C 0.09 1.45 5.84 -3.35 -0.02 1.43 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.90 7.90 -51.93 -0.41 0.49 16 40 H 0.08 1.03 7.73 -51.93 -0.40 0.63 16 41 H 0.08 1.56 6.99 -51.93 -0.36 1.19 16 42 H 0.06 1.15 8.12 -51.93 -0.42 0.72 16 43 H 0.05 1.02 7.44 -51.93 -0.39 0.63 16 44 H 0.07 1.44 7.75 -51.93 -0.40 1.03 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 47 H 0.05 1.12 7.56 -51.93 -0.39 0.73 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 2.17 4.94 -51.93 -0.26 1.92 16 50 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16 51 H 0.07 0.94 5.91 -51.93 -0.31 0.63 16 LS Contribution 393.91 15.07 5.94 5.94 Total: -1.00 -29.84 393.91 -9.61 -39.46 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -9.62 Total: -0.69 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 0.16 Total: 6.62 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.29 Total: -48.04 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.77 Total: -18.20 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.84 -9.61 -39.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585127154.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.764 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds