Wall clock time and date at job start Fri Apr 10 2020 18:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47309 * 2 1 4 4 C 1.52999 * 109.47078 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46874 * 180.02562 * 4 3 2 6 6 O 1.42894 * 109.46959 * 180.02562 * 5 4 3 7 7 C 1.42901 * 114.00172 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47378 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99793 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00014 * 180.02562 * 8 7 6 11 11 C 1.46959 * 120.59697 * 359.71610 * 10 8 7 12 12 C 1.53813 * 108.40272 * 124.75749 * 11 10 8 13 13 H 1.08997 * 109.67995 * 169.38950 * 12 11 10 14 14 C 1.53003 * 109.74209 * 289.85641 * 12 11 10 15 15 N 1.46970 * 108.57496 * 49.63950 * 12 11 10 16 16 C 1.36931 * 120.59148 * 124.66860 * 15 12 11 17 17 H 1.08003 * 120.00717 * 305.09097 * 16 15 12 18 18 C 1.38816 * 120.00079 * 125.08762 * 16 15 12 19 19 N 1.31619 * 120.00156 * 155.49776 * 18 16 15 20 20 Si 1.86806 * 119.99791 * 335.50312 * 18 16 15 21 21 H 1.48507 * 109.46995 * 95.41297 * 20 18 16 22 22 H 1.48497 * 109.46751 * 215.41204 * 20 18 16 23 23 H 1.48501 * 109.46897 * 335.41406 * 20 18 16 24 24 C 1.46968 * 118.81318 * 304.65040 * 15 12 11 25 25 H 1.08995 * 109.74808 * 295.39821 * 24 15 12 26 26 C 1.52997 * 109.60733 * 174.97055 * 24 15 12 27 27 C 1.46970 * 120.59254 * 179.97438 * 10 8 7 28 28 H 1.09006 * 109.46502 * 299.99441 * 1 2 3 29 29 H 1.08997 * 109.46808 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47129 * 59.99566 * 1 2 3 31 31 H 1.08994 * 109.47129 * 120.00434 * 2 1 3 32 32 H 1.09004 * 109.46860 * 240.00167 * 2 1 3 33 33 H 1.08994 * 109.47380 * 300.00280 * 3 2 1 34 34 H 1.09006 * 109.46531 * 60.00097 * 3 2 1 35 35 H 1.08994 * 109.47326 * 300.00414 * 4 3 2 36 36 H 1.08997 * 109.46526 * 60.00826 * 4 3 2 37 37 H 1.09003 * 109.47196 * 300.00316 * 5 4 3 38 38 H 1.08994 * 109.47222 * 60.00382 * 5 4 3 39 39 H 1.08999 * 109.47079 * 299.99957 * 7 6 5 40 40 H 1.08995 * 109.47071 * 60.00163 * 7 6 5 41 41 H 1.09004 * 109.61661 * 244.54523 * 11 10 8 42 42 H 1.09004 * 109.61069 * 5.05646 * 11 10 8 43 43 H 1.08996 * 109.47100 * 179.15373 * 14 12 11 44 44 H 1.09005 * 109.46550 * 299.15125 * 14 12 11 45 45 H 1.08995 * 109.47067 * 59.15340 * 14 12 11 46 46 H 0.97005 * 119.99556 * 180.02562 * 19 18 16 47 47 H 1.08998 * 109.47645 * 307.00077 * 26 24 15 48 48 H 1.09001 * 109.47096 * 67.00633 * 26 24 15 49 49 H 1.09006 * 109.46731 * 187.00547 * 26 24 15 50 50 H 1.08996 * 109.61002 * 354.94712 * 27 10 8 51 51 H 1.09005 * 109.60763 * 115.45966 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8850 0.0013 6 8 5.5091 2.8849 0.0013 7 6 6.0904 4.1903 0.0025 8 6 7.5927 4.0713 0.0017 9 8 8.1142 2.9764 0.0008 10 7 8.3566 5.1816 0.0031 11 6 7.7385 6.5149 -0.0009 12 6 8.2846 7.3070 1.1992 13 1 7.9899 8.3528 1.1135 14 6 7.7303 6.7221 2.4999 15 7 9.7509 7.2060 1.1985 16 6 10.5270 8.3341 1.1999 17 1 10.3899 9.0850 0.4357 18 6 11.4901 8.5129 2.1835 19 7 12.5287 9.2883 1.9545 20 14 11.3122 7.6527 3.8321 21 1 12.0861 6.3853 3.8153 22 1 11.8298 8.5346 4.9089 23 1 9.8792 7.3543 4.0826 24 6 10.3691 5.8727 1.1968 25 1 10.1252 5.3525 2.1230 26 6 11.8875 6.0110 1.0700 27 6 9.8228 5.0807 0.0030 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 3.9331 0.9287 0.8908 36 1 3.9337 0.9286 -0.8892 37 1 3.7171 3.3991 -0.8887 38 1 3.7165 3.3985 0.8913 39 1 5.7688 4.7321 -0.8870 40 1 5.7688 4.7304 0.8929 41 1 7.9883 7.0313 -0.9277 42 1 6.6563 6.4167 0.0857 43 1 8.1318 7.2769 3.3478 44 1 6.6429 6.7981 2.4979 45 1 8.0213 5.6748 2.5803 46 1 13.2018 9.4129 2.6418 47 1 12.1251 6.6300 0.2049 48 1 12.2864 6.4773 1.9710 49 1 12.3329 5.0241 0.9439 50 1 10.1175 4.0352 0.0921 51 1 10.2181 5.4972 -0.9236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585127155.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:11 Heat of formation + Delta-G solvation = -67.736175 kcal Electronic energy + Delta-G solvation = -27246.462601 eV Core-core repulsion = 23567.471414 eV Total energy + Delta-G solvation = -3678.991187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.98278 -38.24498 -37.26268 -35.90647 -34.35206 -32.70835 -31.88784 -31.61603 -28.81095 -28.20108 -26.41964 -26.06762 -25.03124 -23.22927 -22.20140 -21.39962 -21.35128 -19.71648 -18.50070 -17.33548 -16.76918 -16.58686 -16.31962 -15.77154 -15.38819 -15.02569 -14.76774 -14.68008 -14.22110 -13.94895 -13.86345 -13.49084 -13.25759 -13.13636 -12.73110 -12.66745 -12.41016 -12.39065 -12.18494 -11.65483 -11.60959 -11.55200 -11.40806 -11.34232 -11.33455 -11.08844 -11.00511 -10.86981 -10.67125 -10.58283 -10.30063 -9.97795 -9.80852 -9.71692 -9.66323 -9.37848 -8.59570 -8.20686 -6.53948 -6.12672 -3.70224 2.83344 2.89842 3.29898 3.42944 3.49206 3.80055 4.44923 4.54272 4.55417 4.71248 4.75325 4.79007 4.84700 4.99250 5.08475 5.13463 5.14345 5.15867 5.24340 5.38932 5.42660 5.44393 5.49750 5.53037 5.66404 5.67274 5.71688 5.82380 5.85135 5.93400 5.98016 6.00111 6.03407 6.11964 6.16977 6.21484 6.37857 6.47824 6.61292 6.64795 6.77865 6.91012 6.99423 7.06835 7.37380 7.73438 8.01069 8.44374 8.45551 8.93040 9.58623 10.14431 10.99355 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.029358 B = 0.002601 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.530757 B =10762.904357 C =10998.331005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.119 4.119 5 C 0.060 3.940 6 O -0.364 6.364 7 C 0.047 3.953 8 C 0.512 3.488 9 O -0.534 6.534 10 N -0.596 5.596 11 C 0.093 3.907 12 C 0.150 3.850 13 H 0.084 0.916 14 C -0.168 4.168 15 N -0.590 5.590 16 C -0.283 4.283 17 H 0.070 0.930 18 C 0.064 3.936 19 N -0.884 5.884 20 Si 0.862 3.138 21 H -0.281 1.281 22 H -0.301 1.301 23 H -0.259 1.259 24 C 0.154 3.846 25 H 0.029 0.971 26 C -0.141 4.141 27 C 0.103 3.897 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.040 0.960 45 H 0.044 0.956 46 H 0.265 0.735 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.036 0.964 50 H 0.082 0.918 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.498 -10.925 -4.007 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.155 4.155 4 C -0.157 4.157 5 C -0.017 4.017 6 O -0.283 6.283 7 C -0.032 4.032 8 C 0.298 3.702 9 O -0.411 6.411 10 N -0.330 5.330 11 C -0.031 4.031 12 C 0.042 3.958 13 H 0.102 0.898 14 C -0.227 4.227 15 N -0.314 5.314 16 C -0.411 4.411 17 H 0.087 0.913 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.690 3.310 21 H -0.208 1.208 22 H -0.229 1.229 23 H -0.183 1.183 24 C 0.048 3.952 25 H 0.047 0.953 26 C -0.199 4.199 27 C -0.020 4.020 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.055 0.945 50 H 0.100 0.900 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.926 -11.570 -3.963 22.533 hybrid contribution -0.180 -0.011 1.102 1.117 sum -19.106 -11.580 -2.861 22.524 Atomic orbital electron populations 1.21781 0.95850 1.01617 1.01799 1.21519 0.95792 0.96635 1.02314 1.21535 0.94418 0.97251 1.02254 1.21519 0.94938 0.95504 1.03689 1.22575 0.80898 0.98073 1.00145 1.87997 1.19191 1.25675 1.95405 1.22239 0.92374 0.86380 1.02242 1.20115 0.88376 0.84428 0.77264 1.90680 1.74468 1.26274 1.49702 1.47930 1.07345 1.05567 1.72187 1.22500 0.96326 0.83137 1.01143 1.21189 0.86050 0.97794 0.90741 0.89763 1.22372 0.98602 1.01292 1.00452 1.44294 0.99321 1.01305 1.86502 1.18424 1.14939 0.98615 1.09128 0.91290 1.25891 0.95856 0.94818 0.97390 1.69930 1.09054 1.39423 1.33822 0.87320 0.79340 0.78783 0.85513 1.20842 1.22871 1.18338 1.20988 0.93495 0.86848 0.93869 0.95315 1.21997 0.93860 0.99376 1.04630 1.22281 0.77887 1.01341 1.00527 0.92743 0.92773 0.92761 0.91858 0.91873 0.91809 0.91795 0.90964 0.90984 0.93305 0.93253 0.90589 0.90374 0.90986 0.91036 0.91924 0.94058 0.93676 0.92558 0.90776 0.91395 0.94547 0.89965 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.50 16 2 C -0.13 -0.81 5.93 -26.73 -0.16 -0.97 16 3 C -0.12 -0.80 5.21 -26.73 -0.14 -0.94 16 4 C -0.12 -1.07 5.58 -26.73 -0.15 -1.21 16 5 C 0.06 0.60 5.94 37.16 0.22 0.82 16 6 O -0.36 -5.22 9.88 -55.14 -0.54 -5.77 16 7 C 0.05 0.62 4.76 36.01 0.17 0.79 16 8 C 0.51 8.83 7.77 -10.99 -0.09 8.75 16 9 O -0.53 -11.31 15.90 -14.35 -0.23 -11.54 16 10 N -0.60 -10.11 2.58 -172.24 -0.45 -10.56 16 11 C 0.09 1.38 5.92 -3.37 -0.02 1.36 16 12 C 0.15 2.68 3.32 -67.25 -0.22 2.46 16 13 H 0.08 1.50 7.93 -51.93 -0.41 1.08 16 14 C -0.17 -2.90 9.12 37.16 0.34 -2.56 16 15 N -0.59 -12.85 1.87 -156.78 -0.29 -13.14 16 16 C -0.28 -7.22 8.59 -15.06 -0.13 -7.35 16 17 H 0.07 1.94 8.06 -52.48 -0.42 1.51 16 18 C 0.06 1.71 3.82 -17.43 -0.07 1.65 16 19 N -0.88 -25.11 13.97 55.49 0.78 -24.34 16 20 Si 0.86 21.08 25.14 -169.99 -4.27 16.80 16 21 H -0.28 -6.86 6.46 56.52 0.37 -6.49 16 22 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 23 H -0.26 -6.16 5.19 56.52 0.29 -5.87 16 24 C 0.15 3.23 2.09 -67.51 -0.14 3.09 16 25 H 0.03 0.65 7.03 -51.93 -0.36 0.28 16 26 C -0.14 -3.04 7.78 37.16 0.29 -2.75 16 27 C 0.10 1.92 5.90 -3.62 -0.02 1.90 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.80 7.90 -51.93 -0.41 0.39 16 40 H 0.08 0.89 7.73 -51.93 -0.40 0.49 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.81 5.90 -51.93 -0.31 0.51 16 43 H 0.06 1.21 6.26 -51.93 -0.33 0.89 16 44 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.04 0.83 7.02 -51.93 -0.36 0.46 16 46 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.07 1.69 7.61 -51.93 -0.40 1.29 16 48 H 0.07 1.62 3.33 -51.93 -0.17 1.45 16 49 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.08 1.56 6.99 -51.93 -0.36 1.20 16 51 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 LS Contribution 385.92 15.07 5.82 5.82 Total: -1.00 -30.82 385.92 -8.50 -39.31 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -9.56 Total: -1.13 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 0.25 Total: 4.54 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.04 Total: -48.03 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.77 Total: -17.31 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.27 Total: 16.80 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.82 -8.50 -39.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585127155.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.422 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds