Wall clock time and date at job start Fri Apr 10 2020 18:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47309 * 2 1 4 4 C 1.52999 * 109.47078 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46874 * 180.02562 * 4 3 2 6 6 O 1.42894 * 109.46959 * 180.02562 * 5 4 3 7 7 C 1.42901 * 114.00172 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47378 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99793 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00014 * 180.02562 * 8 7 6 11 11 C 1.46959 * 120.59697 * 359.71610 * 10 8 7 12 12 C 1.53813 * 108.40272 * 124.75749 * 11 10 8 13 13 H 1.08997 * 109.67995 * 169.38950 * 12 11 10 14 14 C 1.53003 * 109.74209 * 289.85641 * 12 11 10 15 15 N 1.46970 * 108.57496 * 49.63950 * 12 11 10 16 16 C 1.36931 * 120.59148 * 124.66860 * 15 12 11 17 17 H 1.08003 * 120.00717 * 305.09097 * 16 15 12 18 18 C 1.38816 * 120.00079 * 125.08762 * 16 15 12 19 19 N 1.31619 * 120.00156 * 155.49776 * 18 16 15 20 20 Si 1.86806 * 119.99791 * 335.50312 * 18 16 15 21 21 H 1.48507 * 109.46995 * 95.41297 * 20 18 16 22 22 H 1.48497 * 109.46751 * 215.41204 * 20 18 16 23 23 H 1.48501 * 109.46897 * 335.41406 * 20 18 16 24 24 C 1.46968 * 118.81318 * 304.65040 * 15 12 11 25 25 H 1.08995 * 109.74808 * 295.39821 * 24 15 12 26 26 C 1.52997 * 109.60733 * 174.97055 * 24 15 12 27 27 C 1.46970 * 120.59254 * 179.97438 * 10 8 7 28 28 H 1.09006 * 109.46502 * 299.99441 * 1 2 3 29 29 H 1.08997 * 109.46808 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47129 * 59.99566 * 1 2 3 31 31 H 1.08994 * 109.47129 * 120.00434 * 2 1 3 32 32 H 1.09004 * 109.46860 * 240.00167 * 2 1 3 33 33 H 1.08994 * 109.47380 * 300.00280 * 3 2 1 34 34 H 1.09006 * 109.46531 * 60.00097 * 3 2 1 35 35 H 1.08994 * 109.47326 * 300.00414 * 4 3 2 36 36 H 1.08997 * 109.46526 * 60.00826 * 4 3 2 37 37 H 1.09003 * 109.47196 * 300.00316 * 5 4 3 38 38 H 1.08994 * 109.47222 * 60.00382 * 5 4 3 39 39 H 1.08999 * 109.47079 * 299.99957 * 7 6 5 40 40 H 1.08995 * 109.47071 * 60.00163 * 7 6 5 41 41 H 1.09004 * 109.61661 * 244.54523 * 11 10 8 42 42 H 1.09004 * 109.61069 * 5.05646 * 11 10 8 43 43 H 1.08996 * 109.47100 * 179.15373 * 14 12 11 44 44 H 1.09005 * 109.46550 * 299.15125 * 14 12 11 45 45 H 1.08995 * 109.47067 * 59.15340 * 14 12 11 46 46 H 0.97005 * 119.99556 * 180.02562 * 19 18 16 47 47 H 1.08998 * 109.47645 * 307.00077 * 26 24 15 48 48 H 1.09001 * 109.47096 * 67.00633 * 26 24 15 49 49 H 1.09006 * 109.46731 * 187.00547 * 26 24 15 50 50 H 1.08996 * 109.61002 * 354.94712 * 27 10 8 51 51 H 1.09005 * 109.60763 * 115.45966 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8850 0.0013 6 8 5.5091 2.8849 0.0013 7 6 6.0904 4.1903 0.0025 8 6 7.5927 4.0713 0.0017 9 8 8.1142 2.9764 0.0008 10 7 8.3566 5.1816 0.0031 11 6 7.7385 6.5149 -0.0009 12 6 8.2846 7.3070 1.1992 13 1 7.9899 8.3528 1.1135 14 6 7.7303 6.7221 2.4999 15 7 9.7509 7.2060 1.1985 16 6 10.5270 8.3341 1.1999 17 1 10.3899 9.0850 0.4357 18 6 11.4901 8.5129 2.1835 19 7 12.5287 9.2883 1.9545 20 14 11.3122 7.6527 3.8321 21 1 12.0861 6.3853 3.8153 22 1 11.8298 8.5346 4.9089 23 1 9.8792 7.3543 4.0826 24 6 10.3691 5.8727 1.1968 25 1 10.1252 5.3525 2.1230 26 6 11.8875 6.0110 1.0700 27 6 9.8228 5.0807 0.0030 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 3.9331 0.9287 0.8908 36 1 3.9337 0.9286 -0.8892 37 1 3.7171 3.3991 -0.8887 38 1 3.7165 3.3985 0.8913 39 1 5.7688 4.7321 -0.8870 40 1 5.7688 4.7304 0.8929 41 1 7.9883 7.0313 -0.9277 42 1 6.6563 6.4167 0.0857 43 1 8.1318 7.2769 3.3478 44 1 6.6429 6.7981 2.4979 45 1 8.0213 5.6748 2.5803 46 1 13.2018 9.4129 2.6418 47 1 12.1251 6.6300 0.2049 48 1 12.2864 6.4773 1.9710 49 1 12.3329 5.0241 0.9439 50 1 10.1175 4.0352 0.0921 51 1 10.2181 5.4972 -0.9236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585127155.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:10 Heat of formation + Delta-G solvation = -85.248379 kcal Electronic energy + Delta-G solvation = -27247.221987 eV Core-core repulsion = 23567.471414 eV Total energy + Delta-G solvation = -3679.750573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.32934 -39.41561 -38.53057 -36.53650 -35.96543 -34.20616 -33.70674 -32.36235 -30.29126 -29.56366 -27.71775 -27.09382 -26.25623 -24.92875 -22.97220 -22.81461 -21.91483 -21.16995 -20.08757 -18.69202 -18.15105 -17.60133 -17.53546 -16.89990 -16.60206 -16.52387 -16.25650 -15.82565 -15.48401 -15.11528 -14.98942 -14.53715 -14.50626 -14.35538 -14.14723 -14.07941 -13.84330 -13.35948 -13.31160 -13.14423 -12.91862 -12.87901 -12.68035 -12.40473 -12.26005 -12.22119 -11.97565 -11.97265 -11.96129 -11.73897 -11.60071 -11.50362 -11.41766 -11.40261 -10.77800 -10.65089 -10.49781 -9.76869 -8.36265 -8.17645 -5.74442 1.32049 1.41548 1.51280 1.55812 1.73641 2.42782 2.81510 3.01508 3.32604 3.53990 3.98349 4.01616 4.03140 4.08455 4.18222 4.19595 4.23428 4.26607 4.31130 4.35401 4.44560 4.48648 4.53359 4.54831 4.65279 4.68511 4.71428 4.78267 4.82789 4.85103 4.89706 4.97919 5.01054 5.05163 5.10680 5.19340 5.21752 5.24186 5.31587 5.36609 5.43401 5.50509 5.53761 5.61728 5.97759 6.13460 6.36762 6.47643 7.09489 7.14977 7.60368 8.20820 8.95147 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.029358 B = 0.002601 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.530757 B =10762.904357 C =10998.331005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.110 4.110 4 C -0.118 4.118 5 C 0.055 3.945 6 O -0.400 6.400 7 C 0.052 3.948 8 C 0.507 3.493 9 O -0.582 6.582 10 N -0.598 5.598 11 C 0.100 3.900 12 C 0.140 3.860 13 H 0.087 0.913 14 C -0.160 4.160 15 N -0.600 5.600 16 C -0.262 4.262 17 H 0.039 0.961 18 C 0.027 3.973 19 N -0.927 5.927 20 Si 0.907 3.093 21 H -0.283 1.283 22 H -0.311 1.311 23 H -0.247 1.247 24 C 0.156 3.844 25 H 0.018 0.982 26 C -0.136 4.136 27 C 0.112 3.888 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.036 0.964 44 H 0.086 0.914 45 H 0.031 0.969 46 H 0.262 0.738 47 H 0.055 0.945 48 H 0.043 0.957 49 H 0.061 0.939 50 H 0.076 0.924 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.950 -11.461 -4.327 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.147 4.147 4 C -0.156 4.156 5 C -0.020 4.020 6 O -0.319 6.319 7 C -0.027 4.027 8 C 0.296 3.704 9 O -0.462 6.462 10 N -0.330 5.330 11 C -0.023 4.023 12 C 0.034 3.966 13 H 0.106 0.894 14 C -0.218 4.218 15 N -0.325 5.325 16 C -0.392 4.392 17 H 0.056 0.944 18 C -0.173 4.173 19 N -0.568 5.568 20 Si 0.735 3.265 21 H -0.210 1.210 22 H -0.240 1.240 23 H -0.171 1.171 24 C 0.050 3.950 25 H 0.036 0.964 26 C -0.194 4.194 27 C -0.012 4.012 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.138 0.862 43 H 0.055 0.945 44 H 0.104 0.896 45 H 0.050 0.950 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.062 0.938 49 H 0.080 0.920 50 H 0.095 0.905 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.438 -12.108 -4.285 25.854 hybrid contribution 0.857 0.128 1.130 1.424 sum -21.582 -11.980 -3.154 24.884 Atomic orbital electron populations 1.21771 0.95074 1.01944 1.02139 1.21536 0.96471 0.96525 1.01977 1.21490 0.92718 0.97514 1.03021 1.21528 0.96364 0.95199 1.02517 1.22801 0.78793 0.98653 1.01798 1.87965 1.21598 1.26590 1.95762 1.22306 0.88773 0.86677 1.04952 1.20963 0.90330 0.83428 0.75708 1.90660 1.75716 1.28053 1.51742 1.48001 1.06494 1.06649 1.71890 1.22559 0.98725 0.81381 0.99612 1.21413 0.83361 0.98987 0.92810 0.89449 1.22262 1.01334 0.99653 0.98592 1.44388 1.01097 1.00358 1.86689 1.18226 1.14798 0.98697 1.07465 0.94389 1.26272 0.95833 0.95650 0.99549 1.70021 1.10208 1.42029 1.34529 0.86599 0.79689 0.77628 0.82570 1.21014 1.23963 1.17096 1.20921 0.92978 0.86690 0.94432 0.96421 1.21908 0.94854 1.00199 1.02441 1.21971 0.79671 1.00366 0.99210 0.92452 0.92529 0.92342 0.92337 0.92183 0.90878 0.91081 0.92318 0.92068 0.91356 0.91672 0.87203 0.87785 0.90468 0.86222 0.94490 0.89573 0.95006 0.92841 0.92616 0.93803 0.92015 0.90545 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.13 -1.45 5.93 30.60 0.18 -1.27 16 3 C -0.11 -1.24 5.21 30.59 0.16 -1.08 16 4 C -0.12 -1.90 5.58 30.60 0.17 -1.73 16 5 C 0.06 0.91 5.94 71.98 0.43 1.34 16 6 O -0.40 -10.29 9.88 -129.94 -1.28 -11.57 16 7 C 0.05 1.13 4.76 71.24 0.34 1.47 16 8 C 0.51 16.13 7.77 87.66 0.68 16.81 16 9 O -0.58 -24.04 15.90 16.00 0.25 -23.78 16 10 N -0.60 -18.64 2.58 -817.23 -2.11 -20.76 16 11 C 0.10 2.56 5.92 86.57 0.51 3.08 16 12 C 0.14 4.64 3.32 45.18 0.15 4.79 16 13 H 0.09 2.86 7.93 -2.39 -0.02 2.84 16 14 C -0.16 -4.95 9.12 71.98 0.66 -4.30 16 15 N -0.60 -25.62 1.87 -649.95 -1.21 -26.84 16 16 C -0.26 -13.53 8.59 84.04 0.72 -12.81 16 17 H 0.04 2.20 8.06 -2.91 -0.02 2.17 16 18 C 0.03 1.47 3.82 84.86 0.32 1.79 16 19 N -0.93 -54.20 13.97 21.65 0.30 -53.90 16 20 Si 0.91 44.06 25.14 68.60 1.72 45.79 16 21 H -0.28 -13.70 6.46 99.48 0.64 -13.06 16 22 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 23 H -0.25 -11.41 5.19 99.48 0.52 -10.90 16 24 C 0.16 6.44 2.09 45.01 0.09 6.53 16 25 H 0.02 0.79 7.03 -2.39 -0.02 0.77 16 26 C -0.14 -5.92 7.78 71.98 0.56 -5.36 16 27 C 0.11 4.06 5.90 86.40 0.51 4.57 16 28 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.11 1.66 7.90 -2.39 -0.02 1.64 16 40 H 0.10 1.74 7.73 -2.39 -0.02 1.72 16 41 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.12 1.96 5.90 -2.38 -0.01 1.94 16 43 H 0.04 1.33 6.26 -2.39 -0.01 1.32 16 44 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 45 H 0.03 1.06 7.02 -2.39 -0.02 1.05 16 46 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 47 H 0.05 2.58 7.61 -2.39 -0.02 2.56 16 48 H 0.04 2.11 3.33 -2.39 -0.01 2.10 16 49 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 50 H 0.08 2.87 6.99 -2.39 -0.02 2.85 16 51 H 0.07 2.51 8.12 -2.38 -0.02 2.50 16 Total: -1.00 -69.62 385.92 4.49 -65.13 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.62 Total: 12.80 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 6.20 Total: 13.14 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -3.02 Total: -101.49 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -1.03 Total: -35.36 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.72 Total: 45.79 kcal Total: -69.62 4.49 -65.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585127155.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.123 kcal (2) G-P(sol) polarization free energy of solvation -69.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds