Wall clock time and date at job start Fri Apr 10 2020 18:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46986 * 300.00240 * 5 3 2 7 7 C 1.53005 * 109.47219 * 180.02562 * 6 5 3 8 8 C 1.52994 * 109.46906 * 59.99762 * 7 6 5 9 9 N 1.46494 * 109.47618 * 60.00244 * 8 7 6 10 10 C 1.34782 * 119.99862 * 84.99618 * 9 8 7 11 11 O 1.21272 * 120.00126 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99603 * 180.02562 * 10 9 8 13 13 H 1.08998 * 109.47202 * 319.99114 * 12 10 9 14 14 N 1.46901 * 109.46764 * 200.00023 * 12 10 9 15 15 C 1.52998 * 109.47555 * 80.00030 * 12 10 9 16 16 C 1.52997 * 109.47207 * 184.99982 * 15 12 10 17 17 C 1.50701 * 109.47062 * 180.02562 * 16 15 12 18 18 H 1.07997 * 120.00310 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99585 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00581 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99745 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46987 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47540 * 119.99259 * 21 19 17 24 24 H 1.48498 * 109.47161 * 239.99762 * 21 19 17 25 25 C 1.52998 * 109.47366 * 299.99803 * 8 7 6 26 26 C 1.52992 * 109.47257 * 180.02562 * 5 3 2 27 27 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 29 29 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 30 30 H 1.08997 * 109.47392 * 59.99712 * 5 3 2 31 31 H 1.09005 * 109.46932 * 299.99942 * 6 5 3 32 32 H 1.08998 * 109.47453 * 59.99968 * 6 5 3 33 33 H 1.09000 * 109.46608 * 299.99989 * 7 6 5 34 34 H 1.08999 * 109.46783 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.46734 * 180.02562 * 8 7 6 36 36 H 0.97003 * 120.00146 * 265.00150 * 9 8 7 37 37 H 1.00899 * 111.00098 * 299.99751 * 14 12 10 38 38 H 1.00904 * 111.00243 * 63.94955 * 14 12 10 39 39 H 1.09006 * 109.46841 * 304.99792 * 15 12 10 40 40 H 1.08997 * 109.47085 * 64.99456 * 15 12 10 41 41 H 1.09006 * 109.47065 * 299.99673 * 16 15 12 42 42 H 1.08997 * 109.47528 * 59.99745 * 16 15 12 43 43 H 0.96996 * 120.00402 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.47603 * 300.00663 * 25 8 7 45 45 H 1.08998 * 109.47444 * 180.02562 * 25 8 7 46 46 H 1.09004 * 109.47330 * 299.99977 * 26 5 3 47 47 H 1.09005 * 109.47124 * 59.99773 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1128 0.5816 1.2502 7 6 5.6408 0.6622 1.2512 8 6 6.0740 2.1295 1.2514 9 7 5.5493 2.7936 2.4471 10 6 6.2299 2.7266 3.6085 11 8 7.2769 2.1171 3.6636 12 6 5.6897 3.4093 4.8387 13 1 5.2664 4.3748 4.5622 14 7 6.7781 3.6105 5.8047 15 6 4.6024 2.5375 5.4700 16 6 3.9678 3.2844 6.6448 17 6 2.8972 2.4254 7.2669 18 1 2.6898 1.4450 6.8643 19 6 2.1818 2.8917 8.3493 20 7 2.4340 4.0858 8.8393 21 14 0.8542 1.8273 9.1201 22 1 0.7665 0.5382 8.3881 23 1 1.1919 1.5673 10.5425 24 1 -0.4514 2.5304 9.0418 25 6 5.5275 2.8229 0.0018 26 6 4.0001 2.7421 0.0011 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.9564 0.7806 -0.8891 31 1 3.7227 1.0759 2.1399 32 1 3.8038 -0.4637 1.2503 33 1 6.0312 0.1682 0.3614 34 1 6.0300 0.1686 2.1416 35 1 7.1625 2.1870 1.2516 36 1 4.7119 3.2813 2.4031 37 1 7.1874 2.7294 6.0770 38 1 7.4786 4.2357 5.4351 39 1 3.8379 2.3145 4.7256 40 1 5.0442 1.6072 5.8269 41 1 4.7324 3.5074 7.3891 42 1 3.5260 4.2147 6.2879 43 1 1.9304 4.4140 9.6006 44 1 5.9179 2.3289 -0.8880 45 1 5.8365 3.8681 0.0017 46 1 3.6107 3.2365 -0.8889 47 1 3.6100 3.2360 0.8911 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591613354.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:33 Heat of formation + Delta-G solvation = -153.762926 kcal Electronic energy + Delta-G solvation = -27019.920794 eV Core-core repulsion = 23201.366113 eV Total energy + Delta-G solvation = -3818.554681 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.05460 -40.05521 -38.25857 -36.63381 -35.16584 -33.86785 -32.78282 -31.17839 -30.57922 -30.05507 -27.91265 -26.36157 -24.29157 -23.44904 -22.99532 -21.13177 -20.80806 -19.89400 -19.29592 -17.79495 -17.35587 -16.97038 -16.66261 -16.24992 -15.87182 -15.41436 -15.32300 -14.77481 -14.37756 -14.25569 -14.08254 -13.79726 -13.48402 -13.37584 -13.07419 -12.88253 -12.55109 -12.42144 -12.30250 -12.21183 -11.98933 -11.54907 -11.47801 -11.21986 -11.01871 -10.91003 -10.84615 -10.66165 -10.62431 -10.51883 -10.33151 -10.09411 -9.79207 -9.36030 -9.02725 -8.97140 -8.33594 -8.18632 -5.92975 -3.94961 1.99319 2.48574 2.80287 3.29768 3.34210 3.41731 3.45400 4.22597 4.34760 4.41487 4.50782 4.71901 4.78403 4.88176 4.89282 4.93315 4.99013 5.05078 5.12035 5.14132 5.15712 5.32775 5.37883 5.42751 5.49061 5.55449 5.69807 5.77492 5.83140 5.85872 5.90926 6.01851 6.05016 6.19166 6.43934 6.53972 6.66618 7.10038 7.40191 7.53082 7.62820 7.77542 7.81852 7.97379 8.14134 8.35230 8.49455 9.13198 9.68208 11.18011 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.009611 B = 0.004220 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.663753 B = 6633.651113 C = 8878.729418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.463 3.537 4 O -0.504 6.504 5 C -0.077 4.077 6 C -0.112 4.112 7 C -0.127 4.127 8 C 0.140 3.860 9 N -0.725 5.725 10 C 0.485 3.515 11 O -0.554 6.554 12 C 0.077 3.923 13 H 0.096 0.904 14 N -0.807 5.807 15 C -0.094 4.094 16 C 0.031 3.969 17 C -0.521 4.521 18 H 0.052 0.948 19 C 0.058 3.942 20 N -0.892 5.892 21 Si 0.887 3.113 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.285 1.285 25 C -0.125 4.125 26 C -0.107 4.107 27 H 0.101 0.899 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.401 0.599 37 H 0.347 0.653 38 H 0.333 0.667 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.035 0.965 42 H 0.013 0.987 43 H 0.259 0.741 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.665 -5.533 -22.672 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.306 3.694 4 O -0.391 6.391 5 C -0.096 4.096 6 C -0.150 4.150 7 C -0.166 4.166 8 C 0.035 3.965 9 N -0.379 5.379 10 C 0.270 3.730 11 O -0.432 6.432 12 C -0.039 4.039 13 H 0.114 0.886 14 N -0.335 5.335 15 C -0.132 4.132 16 C -0.006 4.006 17 C -0.559 4.559 18 H 0.070 0.930 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.716 3.284 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.162 4.162 26 C -0.145 4.145 27 H 0.119 0.881 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.237 0.763 37 H 0.161 0.839 38 H 0.145 0.855 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.031 0.969 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.571 -5.240 -21.994 22.890 hybrid contribution -0.920 -0.737 -0.369 1.235 sum 2.651 -5.977 -22.363 23.300 Atomic orbital electron populations 1.23289 0.76232 1.03748 1.02697 1.86500 1.23522 1.33506 1.83987 1.23849 0.92095 0.81363 0.72107 1.90684 1.67191 1.36334 1.44879 1.21132 0.86788 0.99454 1.02245 1.21531 0.96166 1.01234 0.96053 1.21910 0.94853 0.96620 1.03175 1.20931 0.99340 0.91732 0.84478 1.46325 1.26572 1.55322 1.09640 1.22718 0.84273 0.80227 0.85738 1.90632 1.23838 1.43510 1.85235 1.21841 0.94767 1.00065 0.87236 0.88563 1.58993 1.14850 1.18760 1.40871 1.21635 0.93986 0.97903 0.99679 1.19021 0.95174 0.94636 0.91816 1.21309 1.18559 1.02073 1.14001 0.92993 1.24983 0.97312 0.95014 0.96979 1.69980 1.41195 1.17314 1.24673 0.86614 0.81915 0.80656 0.79254 1.19887 1.21032 1.21115 1.21826 0.94977 1.01795 0.97645 1.21460 0.95575 0.93474 1.03988 0.88089 0.91547 0.92016 0.87325 0.90699 0.90372 0.90860 0.90536 0.89356 0.76303 0.83865 0.85499 0.93015 0.92876 0.94656 0.96904 0.93164 0.90177 0.90489 0.90516 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.82 10.47 -39.27 -0.41 -4.23 16 3 C 0.46 5.25 7.26 36.01 0.26 5.51 16 4 O -0.50 -7.10 15.73 -18.75 -0.29 -7.40 16 5 C -0.08 -0.66 2.63 -91.77 -0.24 -0.91 16 6 C -0.11 -1.08 4.98 -26.73 -0.13 -1.21 16 7 C -0.13 -1.20 5.60 -26.73 -0.15 -1.35 16 8 C 0.14 1.36 2.78 -67.94 -0.19 1.17 16 9 N -0.73 -8.50 4.23 -53.81 -0.23 -8.72 16 10 C 0.48 7.29 7.03 -10.98 -0.08 7.21 16 11 O -0.55 -9.71 15.91 5.56 0.09 -9.62 16 12 C 0.08 1.27 3.15 -68.86 -0.22 1.06 16 13 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 14 N -0.81 -13.56 8.44 -5.65 -0.05 -13.61 16 15 C -0.09 -1.89 4.78 -26.73 -0.13 -2.01 16 16 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 17 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 21 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 C -0.12 -0.89 5.61 -26.75 -0.15 -1.04 16 26 C -0.11 -0.89 4.32 -26.76 -0.12 -1.01 16 27 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 29 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 30 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.88 7.60 -51.93 -0.39 0.48 16 32 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.97 7.58 -51.93 -0.39 0.57 16 36 H 0.40 4.36 6.86 -40.82 -0.28 4.08 16 37 H 0.35 5.92 8.58 -39.29 -0.34 5.58 16 38 H 0.33 4.85 9.06 -39.29 -0.36 4.50 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 42 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 47 H 0.07 0.73 6.46 -51.93 -0.34 0.39 16 LS Contribution 380.90 15.07 5.74 5.74 Total: -1.00 -34.20 380.90 -8.01 -42.21 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -7.96 Total: 9.20 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -0.62 Total: -4.09 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 0.46 Total: -48.66 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.62 Total: -21.25 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.20 -8.01 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591613354.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.556 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds