Wall clock time and date at job start Fri Apr 10 2020 18:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46986 * 300.00240 * 5 3 2 7 7 C 1.53005 * 109.47219 * 180.02562 * 6 5 3 8 8 C 1.52994 * 109.46906 * 59.99762 * 7 6 5 9 9 N 1.46494 * 109.47618 * 60.00244 * 8 7 6 10 10 C 1.34782 * 119.99862 * 84.99618 * 9 8 7 11 11 O 1.21272 * 120.00126 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99603 * 180.02562 * 10 9 8 13 13 H 1.08998 * 109.47202 * 319.99114 * 12 10 9 14 14 N 1.46901 * 109.46764 * 200.00023 * 12 10 9 15 15 C 1.52998 * 109.47555 * 80.00030 * 12 10 9 16 16 C 1.52997 * 109.47207 * 184.99982 * 15 12 10 17 17 C 1.50701 * 109.47062 * 180.02562 * 16 15 12 18 18 H 1.07997 * 120.00310 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99585 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00581 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99745 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46987 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47540 * 119.99259 * 21 19 17 24 24 H 1.48498 * 109.47161 * 239.99762 * 21 19 17 25 25 C 1.52998 * 109.47366 * 299.99803 * 8 7 6 26 26 C 1.52992 * 109.47257 * 180.02562 * 5 3 2 27 27 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 29 29 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 30 30 H 1.08997 * 109.47392 * 59.99712 * 5 3 2 31 31 H 1.09005 * 109.46932 * 299.99942 * 6 5 3 32 32 H 1.08998 * 109.47453 * 59.99968 * 6 5 3 33 33 H 1.09000 * 109.46608 * 299.99989 * 7 6 5 34 34 H 1.08999 * 109.46783 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.46734 * 180.02562 * 8 7 6 36 36 H 0.97003 * 120.00146 * 265.00150 * 9 8 7 37 37 H 1.00899 * 111.00098 * 299.99751 * 14 12 10 38 38 H 1.00904 * 111.00243 * 63.94955 * 14 12 10 39 39 H 1.09006 * 109.46841 * 304.99792 * 15 12 10 40 40 H 1.08997 * 109.47085 * 64.99456 * 15 12 10 41 41 H 1.09006 * 109.47065 * 299.99673 * 16 15 12 42 42 H 1.08997 * 109.47528 * 59.99745 * 16 15 12 43 43 H 0.96996 * 120.00402 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.47603 * 300.00663 * 25 8 7 45 45 H 1.08998 * 109.47444 * 180.02562 * 25 8 7 46 46 H 1.09004 * 109.47330 * 299.99977 * 26 5 3 47 47 H 1.09005 * 109.47124 * 59.99773 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1128 0.5816 1.2502 7 6 5.6408 0.6622 1.2512 8 6 6.0740 2.1295 1.2514 9 7 5.5493 2.7936 2.4471 10 6 6.2299 2.7266 3.6085 11 8 7.2769 2.1171 3.6636 12 6 5.6897 3.4093 4.8387 13 1 5.2664 4.3748 4.5622 14 7 6.7781 3.6105 5.8047 15 6 4.6024 2.5375 5.4700 16 6 3.9678 3.2844 6.6448 17 6 2.8972 2.4254 7.2669 18 1 2.6898 1.4450 6.8643 19 6 2.1818 2.8917 8.3493 20 7 2.4340 4.0858 8.8393 21 14 0.8542 1.8273 9.1201 22 1 0.7665 0.5382 8.3881 23 1 1.1919 1.5673 10.5425 24 1 -0.4514 2.5304 9.0418 25 6 5.5275 2.8229 0.0018 26 6 4.0001 2.7421 0.0011 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.9564 0.7806 -0.8891 31 1 3.7227 1.0759 2.1399 32 1 3.8038 -0.4637 1.2503 33 1 6.0312 0.1682 0.3614 34 1 6.0300 0.1686 2.1416 35 1 7.1625 2.1870 1.2516 36 1 4.7119 3.2813 2.4031 37 1 7.1874 2.7294 6.0770 38 1 7.4786 4.2357 5.4351 39 1 3.8379 2.3145 4.7256 40 1 5.0442 1.6072 5.8269 41 1 4.7324 3.5074 7.3891 42 1 3.5260 4.2147 6.2879 43 1 1.9304 4.4140 9.6006 44 1 5.9179 2.3289 -0.8880 45 1 5.8365 3.8681 0.0017 46 1 3.6107 3.2365 -0.8889 47 1 3.6100 3.2360 0.8911 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591613354.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:32 Heat of formation + Delta-G solvation = -177.516442 kcal Electronic energy + Delta-G solvation = -27020.950824 eV Core-core repulsion = 23201.366113 eV Total energy + Delta-G solvation = -3819.584711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.91786 -41.13313 -39.20557 -37.52805 -36.75193 -34.85006 -34.81306 -31.96771 -31.84002 -31.42913 -28.68046 -28.03259 -25.68286 -24.61374 -23.69734 -22.61348 -21.75994 -21.28485 -20.15885 -18.77820 -18.61096 -18.10806 -17.78644 -17.57062 -17.11525 -16.68385 -16.42297 -16.24099 -15.75265 -15.20541 -15.11346 -14.80222 -14.77433 -14.31071 -14.25715 -13.87959 -13.80472 -13.64741 -13.43619 -13.23560 -13.12958 -12.91658 -12.83876 -12.51829 -12.24978 -12.17074 -12.04015 -11.83342 -11.76217 -11.64362 -11.58786 -11.37165 -11.24461 -11.14162 -10.97050 -10.50861 -10.03114 -9.58726 -8.15286 -6.25543 1.13184 1.39584 1.40214 1.52408 1.56767 1.75494 2.25648 2.43203 3.17784 3.50447 3.58271 3.63525 3.72464 3.86493 4.02542 4.07357 4.13165 4.18421 4.28509 4.30086 4.32297 4.37893 4.42685 4.47523 4.66273 4.69497 4.76066 4.83373 4.91996 5.00449 5.08175 5.13936 5.15790 5.24403 5.30236 5.32446 5.39514 5.55423 5.59518 5.82981 5.97291 6.11839 6.29102 6.48398 6.56174 6.68723 6.93133 7.19617 7.42613 8.96226 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.009611 B = 0.004220 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.663753 B = 6633.651113 C = 8878.729418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.460 3.540 4 O -0.539 6.539 5 C -0.070 4.070 6 C -0.107 4.107 7 C -0.121 4.121 8 C 0.136 3.864 9 N -0.712 5.712 10 C 0.492 3.508 11 O -0.578 6.578 12 C 0.082 3.918 13 H 0.105 0.895 14 N -0.819 5.819 15 C -0.079 4.079 16 C 0.039 3.961 17 C -0.543 4.543 18 H 0.054 0.946 19 C 0.003 3.997 20 N -0.929 5.929 21 Si 0.958 3.042 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.278 1.278 25 C -0.112 4.112 26 C -0.106 4.106 27 H 0.130 0.870 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.142 0.858 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.406 0.594 37 H 0.345 0.655 38 H 0.347 0.653 39 H 0.060 0.940 40 H 0.043 0.957 41 H 0.007 0.993 42 H -0.009 1.009 43 H 0.262 0.738 44 H 0.110 0.890 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.558 -6.765 -24.767 25.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.305 3.695 4 O -0.428 6.428 5 C -0.089 4.089 6 C -0.145 4.145 7 C -0.159 4.159 8 C 0.032 3.968 9 N -0.365 5.365 10 C 0.277 3.723 11 O -0.458 6.458 12 C -0.034 4.034 13 H 0.123 0.877 14 N -0.348 5.348 15 C -0.117 4.117 16 C 0.002 3.998 17 C -0.581 4.581 18 H 0.072 0.928 19 C -0.195 4.195 20 N -0.570 5.570 21 Si 0.783 3.217 22 H -0.188 1.188 23 H -0.205 1.205 24 H -0.204 1.204 25 C -0.149 4.149 26 C -0.144 4.144 27 H 0.148 0.852 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.160 0.840 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.123 0.877 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.243 0.757 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.025 0.975 42 H 0.010 0.990 43 H 0.071 0.929 44 H 0.128 0.872 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.456 -6.481 -24.127 25.221 hybrid contribution -0.920 -0.354 0.267 1.021 sum 2.536 -6.835 -23.861 24.950 Atomic orbital electron populations 1.23506 0.75270 1.05557 1.02280 1.86501 1.24612 1.33218 1.83608 1.24428 0.93135 0.81006 0.70977 1.90669 1.68134 1.37387 1.46616 1.21211 0.84912 0.99866 1.02902 1.21450 0.96280 1.01270 0.95501 1.21864 0.94445 0.96252 1.03367 1.21159 0.99031 0.92170 0.84463 1.46279 1.26157 1.54524 1.09496 1.22168 0.84113 0.79924 0.86116 1.90624 1.24939 1.44585 1.85673 1.21625 0.93893 0.99880 0.87996 0.87748 1.58954 1.15353 1.19019 1.41496 1.21340 0.95055 0.97264 0.98045 1.18830 0.94004 0.94044 0.92943 1.21744 1.19345 1.02495 1.14492 0.92775 1.25887 0.99757 0.96329 0.97545 1.70106 1.42500 1.19095 1.25277 0.85505 0.78813 0.79070 0.78291 1.18848 1.20455 1.20353 1.21783 0.93760 1.02254 0.97108 1.21453 0.96373 0.93146 1.03403 0.85231 0.92904 0.91541 0.84033 0.93395 0.90004 0.87745 0.93262 0.90042 0.75686 0.84126 0.84017 0.92095 0.93849 0.97481 0.99025 0.92915 0.87193 0.89857 0.89873 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.36 -7.24 10.47 -51.46 -0.54 -7.78 16 3 C 0.46 9.88 7.26 71.24 0.52 10.40 16 4 O -0.54 -15.00 15.73 21.98 0.35 -14.65 16 5 C -0.07 -1.04 2.63 -11.54 -0.03 -1.07 16 6 C -0.11 -1.89 4.98 30.60 0.15 -1.74 16 7 C -0.12 -2.03 5.60 30.59 0.17 -1.85 16 8 C 0.14 2.36 2.78 44.99 0.13 2.48 16 9 N -0.71 -16.03 4.23 -442.55 -1.87 -17.91 16 10 C 0.49 14.61 7.03 87.66 0.62 15.23 16 11 O -0.58 -20.03 15.91 -3.01 -0.05 -20.08 16 12 C 0.08 2.74 3.15 44.17 0.14 2.88 16 13 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 14 N -0.82 -27.94 8.44 -171.80 -1.45 -29.39 16 15 C -0.08 -3.23 4.78 30.59 0.15 -3.08 16 16 C 0.04 2.07 4.86 29.85 0.15 2.21 16 17 C -0.54 -31.34 9.11 25.60 0.23 -31.10 16 18 H 0.05 3.03 7.74 -2.91 -0.02 3.00 16 19 C 0.00 0.15 5.46 84.66 0.46 0.62 16 20 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 21 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 22 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 C -0.11 -1.23 5.61 30.58 0.17 -1.06 16 26 C -0.11 -1.53 4.32 30.58 0.13 -1.40 16 27 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.05 0.98 8.13 -2.39 -0.02 0.96 16 29 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 30 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.10 7.60 -2.38 -0.02 1.08 16 32 H 0.08 1.39 8.11 -2.39 -0.02 1.37 16 33 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.61 7.58 -2.38 -0.02 1.59 16 36 H 0.41 8.53 6.86 -92.71 -0.64 7.89 16 37 H 0.35 12.00 8.58 -89.69 -0.77 11.23 16 38 H 0.35 10.09 9.06 -89.69 -0.81 9.28 16 39 H 0.06 2.35 8.14 -2.38 -0.02 2.34 16 40 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.01 0.39 7.75 -2.38 -0.02 0.38 16 42 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.08 1.14 8.10 -2.38 -0.02 1.12 16 47 H 0.05 1.02 6.46 -2.38 -0.02 1.01 16 Total: -1.00 -75.25 380.90 1.69 -73.56 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: -1.23 Total: 32.14 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 4.18 Total: -5.87 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -3.04 Total: -104.39 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -0.24 Total: -42.52 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -75.25 1.69 -73.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591613354.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.959 kcal (2) G-P(sol) polarization free energy of solvation -75.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds