Wall clock time and date at job start Fri Apr 10 2020 18:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00313 * 2 1 4 4 H 1.09003 * 112.88735 * 21.83898 * 3 2 1 5 5 C 1.53946 * 113.66463 * 250.49613 * 3 2 1 6 6 C 1.53952 * 87.38049 * 270.22313 * 5 3 2 7 7 H 1.08995 * 113.66215 * 89.77774 * 6 5 3 8 8 N 1.46896 * 113.65853 * 220.83315 * 6 5 3 9 9 C 1.46897 * 111.00036 * 255.48769 * 8 6 5 10 10 C 1.53005 * 109.47636 * 180.02562 * 9 8 6 11 11 H 1.09003 * 109.46221 * 60.00376 * 10 9 8 12 12 O 1.42895 * 109.47299 * 300.00839 * 10 9 8 13 13 C 1.52995 * 109.47511 * 180.02562 * 10 9 8 14 14 N 1.46897 * 109.47028 * 180.46494 * 13 10 9 15 15 C 1.46904 * 110.99671 * 199.85068 * 14 13 10 16 16 C 1.46905 * 111.00010 * 75.90264 * 14 13 10 17 17 C 1.50703 * 109.47133 * 189.99992 * 16 14 13 18 18 H 1.08004 * 119.99375 * 359.97438 * 17 16 14 19 19 C 1.37878 * 119.99873 * 179.97438 * 17 16 14 20 20 N 1.31510 * 119.99840 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99666 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47199 * 90.00163 * 21 19 17 23 23 H 1.48501 * 109.47227 * 209.99766 * 21 19 17 24 24 H 1.48500 * 109.47221 * 330.00215 * 21 19 17 25 25 C 1.52910 * 113.66695 * 153.30604 * 3 2 1 26 26 C 1.52911 * 121.13408 * 323.85958 * 25 3 2 27 27 C 1.53950 * 86.77837 * 209.37621 * 26 25 3 28 28 C 1.52899 * 121.13934 * 215.29201 * 25 3 2 29 29 H 1.09000 * 109.47003 * 300.00114 * 1 2 3 30 30 H 1.09002 * 109.47321 * 59.99751 * 1 2 3 31 31 H 1.08998 * 109.47492 * 180.02562 * 1 2 3 32 32 H 1.09000 * 113.57820 * 24.86221 * 5 3 2 33 33 H 1.09003 * 113.58495 * 155.57775 * 5 3 2 34 34 H 1.00898 * 111.00466 * 19.44625 * 8 6 5 35 35 H 1.08999 * 109.47498 * 300.00517 * 9 8 6 36 36 H 1.08999 * 109.47118 * 60.00398 * 9 8 6 37 37 H 0.96703 * 114.00142 * 299.99900 * 12 10 9 38 38 H 1.08997 * 109.47015 * 300.46619 * 13 10 9 39 39 H 1.09001 * 109.46918 * 60.46403 * 13 10 9 40 40 H 1.09002 * 109.46889 * 64.82796 * 15 14 13 41 41 H 1.09004 * 109.46940 * 184.82186 * 15 14 13 42 42 H 1.08999 * 109.47281 * 304.82381 * 15 14 13 43 43 H 1.09004 * 109.46410 * 309.99839 * 16 14 13 44 44 H 1.08996 * 109.47014 * 69.99707 * 16 14 13 45 45 H 0.97005 * 119.99938 * 180.02562 * 20 19 17 46 46 H 1.09005 * 113.66198 * 323.84597 * 26 25 3 47 47 H 1.08996 * 113.66539 * 94.90334 * 26 25 3 48 48 H 1.08997 * 113.58397 * 270.12661 * 27 26 25 49 49 H 1.09009 * 113.65207 * 139.34671 * 27 26 25 50 50 H 1.08995 * 113.66682 * 265.08929 * 28 25 3 51 51 H 1.09005 * 113.66403 * 36.05454 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3312 2.0718 0.3736 5 6 2.6917 1.6784 -1.3291 6 6 3.9833 1.0663 -0.7572 7 1 4.0954 0.0033 -0.9704 8 7 5.1911 1.8430 -1.0667 9 6 5.9782 1.1937 -2.1234 10 6 7.2256 2.0296 -2.4172 11 1 7.8290 2.1118 -1.5131 12 8 6.8338 3.3344 -2.8486 13 6 8.0450 1.3536 -3.5182 14 7 9.2482 2.1505 -3.7924 15 6 9.8051 1.8258 -5.1124 16 6 10.2535 1.9662 -2.7372 17 6 11.3606 2.9729 -2.9166 18 1 11.3214 3.6786 -3.7332 19 6 12.4233 2.9928 -2.0384 20 7 12.4706 2.1336 -1.0439 21 14 13.7958 4.2401 -2.2614 22 1 13.4691 5.4760 -1.5055 23 1 15.0695 3.6709 -1.7525 24 1 13.9398 4.5652 -3.7031 25 6 3.4030 1.3571 0.6291 26 6 3.7588 0.4864 1.8347 27 6 4.7458 1.5975 2.2362 28 6 3.8609 2.5716 1.4373 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.2962 1.1372 -2.1887 33 1 2.7566 2.7530 -1.4994 34 1 4.9562 2.7907 -1.3214 35 1 6.2775 0.1986 -1.7941 36 1 5.3747 1.1110 -3.0273 37 1 6.2928 3.3377 -3.6501 38 1 8.3369 0.3551 -3.1927 39 1 7.4441 1.2791 -4.4245 40 1 9.0962 2.1172 -5.8875 41 1 10.7412 2.3659 -5.2547 42 1 9.9911 0.7536 -5.1746 43 1 9.7872 2.1088 -1.7623 44 1 10.6649 0.9587 -2.7993 45 1 13.2180 2.1479 -0.4258 46 1 2.9365 0.3563 2.5383 47 1 4.2427 -0.4532 1.5681 48 1 5.7427 1.4685 1.8149 49 1 4.7625 1.8017 3.3069 50 1 4.4264 3.2978 0.8535 51 1 3.0669 3.0287 2.0281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591770731.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:42 Heat of formation + Delta-G solvation = -41.609457 kcal Electronic energy + Delta-G solvation = -26979.613431 eV Core-core repulsion = 23301.755183 eV Total energy + Delta-G solvation = -3677.858248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.93488 -38.08034 -37.31551 -35.82561 -34.92986 -32.77611 -32.42689 -29.48088 -27.28323 -27.03997 -25.76802 -25.66306 -24.70060 -23.79334 -22.79485 -21.43449 -20.97077 -20.01291 -18.36408 -16.81833 -16.54786 -16.22568 -16.11430 -15.65812 -15.56654 -15.12611 -14.79296 -14.70839 -14.43848 -14.13114 -13.64171 -13.37933 -13.23137 -12.99095 -12.67629 -12.51589 -12.37349 -12.16700 -11.92854 -11.89172 -11.80869 -11.47510 -11.37379 -11.11365 -11.07435 -10.86864 -10.69247 -10.58021 -10.52983 -10.33877 -10.28536 -10.11022 -9.71059 -9.51872 -9.48283 -9.08039 -8.37329 -8.27777 -7.15866 -5.96755 -3.97136 3.31398 3.36864 3.42356 3.45855 4.00962 4.32049 4.38492 4.47850 4.54241 4.70508 4.77101 4.84018 4.90424 4.94844 5.04337 5.05766 5.12724 5.26701 5.31686 5.35592 5.38820 5.45196 5.47907 5.61524 5.64554 5.66833 5.71913 5.76126 5.85024 5.86559 5.94205 6.04066 6.08029 6.12396 6.16546 6.35523 6.39452 6.51832 6.60159 6.75788 6.94200 7.08946 7.34039 7.37241 7.46639 7.85270 8.10602 8.16698 8.26591 8.61154 9.09956 9.66384 11.14339 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.002682 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.200021 B =10436.353229 C =11271.416370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.075 3.925 4 H 0.072 0.928 5 C -0.189 4.189 6 C 0.102 3.898 7 H 0.100 0.900 8 N -0.668 5.668 9 C 0.031 3.969 10 C 0.117 3.883 11 H 0.110 0.890 12 O -0.541 6.541 13 C 0.026 3.974 14 N -0.531 5.531 15 C 0.038 3.962 16 C 0.192 3.808 17 C -0.504 4.504 18 H 0.063 0.937 19 C 0.054 3.946 20 N -0.899 5.899 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.274 1.274 25 C -0.092 4.092 26 C -0.116 4.116 27 C -0.133 4.133 28 C -0.106 4.106 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.349 0.651 35 H 0.077 0.923 36 H 0.027 0.973 37 H 0.358 0.642 38 H 0.032 0.968 39 H 0.057 0.943 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.007 0.993 43 H 0.032 0.968 44 H -0.012 1.012 45 H 0.260 0.740 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.091 0.909 49 H 0.060 0.940 50 H 0.079 0.921 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.495 -3.563 1.540 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.016 3.984 4 H 0.090 0.910 5 C -0.228 4.228 6 C -0.009 4.009 7 H 0.118 0.882 8 N -0.298 5.298 9 C -0.099 4.099 10 C 0.057 3.943 11 H 0.128 0.872 12 O -0.343 6.343 13 C -0.104 4.104 14 N -0.255 5.255 15 C -0.111 4.111 16 C 0.067 3.933 17 C -0.542 4.542 18 H 0.081 0.919 19 C -0.147 4.147 20 N -0.539 5.539 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.199 1.199 25 C -0.093 4.093 26 C -0.154 4.154 27 C -0.170 4.170 28 C -0.144 4.144 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.169 0.831 35 H 0.095 0.905 36 H 0.045 0.955 37 H 0.203 0.797 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.025 0.975 43 H 0.050 0.950 44 H 0.006 0.994 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.109 0.891 49 H 0.078 0.922 50 H 0.098 0.902 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.648 -3.384 2.719 24.043 hybrid contribution -0.139 -0.196 -1.342 1.364 sum -23.787 -3.580 1.377 24.095 Atomic orbital electron populations 1.22792 0.81252 1.02651 0.99854 1.87889 1.19319 1.26519 1.94545 1.22877 0.94165 0.84871 0.96478 0.90989 1.24215 0.99169 1.01399 0.98039 1.22652 0.86784 0.97920 0.93526 0.88203 1.60174 1.20095 1.05766 1.43781 1.22686 0.95405 0.99174 0.92662 1.21977 0.92293 0.82237 0.97800 0.87197 1.86697 1.73255 1.27990 1.46363 1.22662 0.94514 0.95388 0.97802 1.62035 1.06421 1.53633 1.03392 1.22226 1.00365 0.97589 0.90925 1.19771 0.88841 0.95253 0.89407 1.21151 1.04113 1.16481 1.12489 0.91919 1.24985 0.98384 0.96059 0.95267 1.69959 1.31692 1.36375 1.15877 0.86505 0.81184 0.81430 0.78319 1.20601 1.21404 1.19935 1.22954 0.92758 0.99266 0.94310 1.22540 0.98781 0.97558 0.96478 1.22782 0.99067 0.95984 0.99163 1.22462 0.98889 0.95601 0.97423 0.94087 0.94179 0.89660 0.91100 0.89221 0.83051 0.90451 0.95463 0.79747 0.94953 0.92445 0.93855 0.90470 0.97452 0.94995 0.99445 0.92994 0.90599 0.91561 0.89078 0.92151 0.90229 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.86 101.05 1.10 1.31 16 2 O -0.36 -3.69 10.44 -35.23 -0.37 -4.06 16 3 C 0.07 0.70 4.15 -26.28 -0.11 0.59 16 4 H 0.07 0.59 7.90 -51.93 -0.41 0.18 16 5 C -0.19 -1.74 7.54 -25.75 -0.19 -1.94 16 6 C 0.10 1.10 4.00 -67.18 -0.27 0.83 16 7 H 0.10 1.18 7.90 -51.93 -0.41 0.77 16 8 N -0.67 -8.04 5.77 -106.16 -0.61 -8.66 16 9 C 0.03 0.39 5.26 -3.82 -0.02 0.37 16 10 C 0.12 1.90 3.30 -26.73 -0.09 1.81 16 11 H 0.11 2.20 6.78 -51.93 -0.35 1.85 16 12 O -0.54 -8.83 12.55 -35.23 -0.44 -9.27 16 13 C 0.03 0.46 4.65 -3.83 -0.02 0.44 16 14 N -0.53 -11.62 4.56 -244.37 -1.11 -12.73 16 15 C 0.04 0.74 9.37 60.07 0.56 1.31 16 16 C 0.19 5.11 4.55 -4.97 -0.02 5.09 16 17 C -0.50 -14.50 8.39 -34.44 -0.29 -14.79 16 18 H 0.06 1.80 7.17 -52.48 -0.38 1.42 16 19 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 21 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 25 C -0.09 -0.94 0.99 -154.63 -0.15 -1.09 16 26 C -0.12 -1.23 7.63 -26.28 -0.20 -1.43 16 27 C -0.13 -1.45 8.08 -25.75 -0.21 -1.66 16 28 C -0.11 -1.07 7.53 -26.29 -0.20 -1.27 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.77 7.82 -51.93 -0.41 0.36 16 34 H 0.35 4.16 7.38 -39.29 -0.29 3.87 16 35 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.36 4.42 9.05 45.56 0.41 4.83 16 38 H 0.03 0.58 8.00 -51.93 -0.42 0.17 16 39 H 0.06 0.86 7.94 -51.93 -0.41 0.45 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.08 1.65 6.66 -51.93 -0.35 1.31 16 42 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 43 H 0.03 0.91 6.63 -51.93 -0.34 0.56 16 44 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 50 H 0.08 0.88 7.39 -51.93 -0.38 0.49 16 51 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 402.07 15.07 6.06 6.06 Total: -1.00 -31.64 402.07 -9.75 -41.39 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -8.79 Total: 5.59 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -0.21 Total: -8.96 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.99 Total: -47.87 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.81 Total: -13.33 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.64 -9.75 -41.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591770731.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.218 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds