Wall clock time and date at job start Fri Apr 10 2020 18:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00313 * 2 1 4 4 H 1.09003 * 112.88735 * 21.83898 * 3 2 1 5 5 C 1.53946 * 113.66463 * 250.49613 * 3 2 1 6 6 C 1.53952 * 87.38049 * 270.22313 * 5 3 2 7 7 H 1.08995 * 113.66215 * 89.77774 * 6 5 3 8 8 N 1.46896 * 113.65853 * 220.83315 * 6 5 3 9 9 C 1.46897 * 111.00036 * 255.48769 * 8 6 5 10 10 C 1.53005 * 109.47636 * 180.02562 * 9 8 6 11 11 H 1.09003 * 109.46221 * 60.00376 * 10 9 8 12 12 O 1.42895 * 109.47299 * 300.00839 * 10 9 8 13 13 C 1.52995 * 109.47511 * 180.02562 * 10 9 8 14 14 N 1.46897 * 109.47028 * 180.46494 * 13 10 9 15 15 C 1.46904 * 110.99671 * 199.85068 * 14 13 10 16 16 C 1.46905 * 111.00010 * 75.90264 * 14 13 10 17 17 C 1.50703 * 109.47133 * 189.99992 * 16 14 13 18 18 H 1.08004 * 119.99375 * 359.97438 * 17 16 14 19 19 C 1.37878 * 119.99873 * 179.97438 * 17 16 14 20 20 N 1.31510 * 119.99840 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99666 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47199 * 90.00163 * 21 19 17 23 23 H 1.48501 * 109.47227 * 209.99766 * 21 19 17 24 24 H 1.48500 * 109.47221 * 330.00215 * 21 19 17 25 25 C 1.52910 * 113.66695 * 153.30604 * 3 2 1 26 26 C 1.52911 * 121.13408 * 323.85958 * 25 3 2 27 27 C 1.53950 * 86.77837 * 209.37621 * 26 25 3 28 28 C 1.52899 * 121.13934 * 215.29201 * 25 3 2 29 29 H 1.09000 * 109.47003 * 300.00114 * 1 2 3 30 30 H 1.09002 * 109.47321 * 59.99751 * 1 2 3 31 31 H 1.08998 * 109.47492 * 180.02562 * 1 2 3 32 32 H 1.09000 * 113.57820 * 24.86221 * 5 3 2 33 33 H 1.09003 * 113.58495 * 155.57775 * 5 3 2 34 34 H 1.00898 * 111.00466 * 19.44625 * 8 6 5 35 35 H 1.08999 * 109.47498 * 300.00517 * 9 8 6 36 36 H 1.08999 * 109.47118 * 60.00398 * 9 8 6 37 37 H 0.96703 * 114.00142 * 299.99900 * 12 10 9 38 38 H 1.08997 * 109.47015 * 300.46619 * 13 10 9 39 39 H 1.09001 * 109.46918 * 60.46403 * 13 10 9 40 40 H 1.09002 * 109.46889 * 64.82796 * 15 14 13 41 41 H 1.09004 * 109.46940 * 184.82186 * 15 14 13 42 42 H 1.08999 * 109.47281 * 304.82381 * 15 14 13 43 43 H 1.09004 * 109.46410 * 309.99839 * 16 14 13 44 44 H 1.08996 * 109.47014 * 69.99707 * 16 14 13 45 45 H 0.97005 * 119.99938 * 180.02562 * 20 19 17 46 46 H 1.09005 * 113.66198 * 323.84597 * 26 25 3 47 47 H 1.08996 * 113.66539 * 94.90334 * 26 25 3 48 48 H 1.08997 * 113.58397 * 270.12661 * 27 26 25 49 49 H 1.09009 * 113.65207 * 139.34671 * 27 26 25 50 50 H 1.08995 * 113.66682 * 265.08929 * 28 25 3 51 51 H 1.09005 * 113.66403 * 36.05454 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3312 2.0718 0.3736 5 6 2.6917 1.6784 -1.3291 6 6 3.9833 1.0663 -0.7572 7 1 4.0954 0.0033 -0.9704 8 7 5.1911 1.8430 -1.0667 9 6 5.9782 1.1937 -2.1234 10 6 7.2256 2.0296 -2.4172 11 1 7.8290 2.1118 -1.5131 12 8 6.8338 3.3344 -2.8486 13 6 8.0450 1.3536 -3.5182 14 7 9.2482 2.1505 -3.7924 15 6 9.8051 1.8258 -5.1124 16 6 10.2535 1.9662 -2.7372 17 6 11.3606 2.9729 -2.9166 18 1 11.3214 3.6786 -3.7332 19 6 12.4233 2.9928 -2.0384 20 7 12.4706 2.1336 -1.0439 21 14 13.7958 4.2401 -2.2614 22 1 13.4691 5.4760 -1.5055 23 1 15.0695 3.6709 -1.7525 24 1 13.9398 4.5652 -3.7031 25 6 3.4030 1.3571 0.6291 26 6 3.7588 0.4864 1.8347 27 6 4.7458 1.5975 2.2362 28 6 3.8609 2.5716 1.4373 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.2962 1.1372 -2.1887 33 1 2.7566 2.7530 -1.4994 34 1 4.9562 2.7907 -1.3214 35 1 6.2775 0.1986 -1.7941 36 1 5.3747 1.1110 -3.0273 37 1 6.2928 3.3377 -3.6501 38 1 8.3369 0.3551 -3.1927 39 1 7.4441 1.2791 -4.4245 40 1 9.0962 2.1172 -5.8875 41 1 10.7412 2.3659 -5.2547 42 1 9.9911 0.7536 -5.1746 43 1 9.7872 2.1088 -1.7623 44 1 10.6649 0.9587 -2.7993 45 1 13.2180 2.1479 -0.4258 46 1 2.9365 0.3563 2.5383 47 1 4.2427 -0.4532 1.5681 48 1 5.7427 1.4685 1.8149 49 1 4.7625 1.8017 3.3069 50 1 4.4264 3.2978 0.8535 51 1 3.0669 3.0287 2.0281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591770731.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:41 Heat of formation + Delta-G solvation = -65.844842 kcal Electronic energy + Delta-G solvation = -26980.664356 eV Core-core repulsion = 23301.755183 eV Total energy + Delta-G solvation = -3678.909173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.73764 -39.46574 -38.04844 -37.32651 -35.99594 -34.59945 -33.70583 -30.84281 -29.29269 -27.73617 -26.97383 -26.54782 -25.50706 -25.42585 -23.99801 -22.74190 -21.83452 -21.66440 -19.20669 -18.60328 -17.56376 -17.42618 -17.12638 -16.88992 -16.55482 -16.43484 -16.05785 -15.88852 -15.64503 -15.37493 -15.19191 -14.85157 -14.19506 -14.02230 -13.93281 -13.72077 -13.57759 -13.23815 -13.14277 -13.02571 -12.96334 -12.78024 -12.56555 -12.53783 -12.52302 -12.29625 -12.23128 -12.14348 -11.85355 -11.54423 -11.34610 -11.30866 -11.18589 -10.93596 -10.60971 -10.59805 -10.22248 -9.19682 -8.94952 -8.19575 -6.29175 1.40139 1.42817 1.53244 2.40822 2.65970 2.95410 3.12967 3.43714 3.53093 3.63311 3.71031 3.79189 3.90860 3.94410 4.05802 4.10190 4.18354 4.29244 4.35431 4.46010 4.50334 4.55293 4.57214 4.58041 4.63590 4.66578 4.77939 4.79916 4.84626 4.86551 4.88818 4.92443 5.01124 5.08481 5.09313 5.14990 5.16108 5.27133 5.28108 5.30920 5.56623 5.63545 5.65440 6.06866 6.14454 6.33339 6.35270 6.53186 6.65324 6.86737 7.06612 7.40023 8.91728 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.002682 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.200021 B =10436.353229 C =11271.416370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.387 6.387 3 C 0.080 3.920 4 H 0.088 0.912 5 C -0.177 4.177 6 C 0.097 3.903 7 H 0.087 0.913 8 N -0.677 5.677 9 C 0.046 3.954 10 C 0.129 3.871 11 H 0.061 0.939 12 O -0.556 6.556 13 C 0.026 3.974 14 N -0.541 5.541 15 C 0.039 3.961 16 C 0.210 3.790 17 C -0.522 4.522 18 H 0.062 0.938 19 C -0.001 4.001 20 N -0.935 5.935 21 Si 0.970 3.030 22 H -0.274 1.274 23 H -0.281 1.281 24 H -0.263 1.263 25 C -0.094 4.094 26 C -0.114 4.114 27 C -0.137 4.137 28 C -0.099 4.099 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.351 0.649 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.378 0.622 38 H 0.024 0.976 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.011 0.989 43 H 0.002 0.998 44 H -0.043 1.043 45 H 0.264 0.736 46 H 0.086 0.914 47 H 0.051 0.949 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.068 0.932 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.355 -2.597 0.348 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.306 6.306 3 C 0.021 3.979 4 H 0.106 0.894 5 C -0.216 4.216 6 C -0.013 4.013 7 H 0.105 0.895 8 N -0.309 5.309 9 C -0.084 4.084 10 C 0.069 3.931 11 H 0.079 0.921 12 O -0.361 6.361 13 C -0.103 4.103 14 N -0.265 5.265 15 C -0.109 4.109 16 C 0.083 3.917 17 C -0.560 4.560 18 H 0.080 0.920 19 C -0.199 4.199 20 N -0.576 5.576 21 Si 0.794 3.206 22 H -0.200 1.200 23 H -0.207 1.207 24 H -0.187 1.187 25 C -0.095 4.095 26 C -0.152 4.152 27 C -0.175 4.175 28 C -0.136 4.136 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.118 0.882 34 H 0.172 0.828 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.226 0.774 38 H 0.043 0.957 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.029 0.971 43 H 0.020 0.980 44 H -0.025 1.025 45 H 0.073 0.927 46 H 0.105 0.895 47 H 0.070 0.930 48 H 0.082 0.918 49 H 0.087 0.913 50 H 0.087 0.913 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.542 -2.422 1.499 25.701 hybrid contribution 0.378 -0.540 -0.974 1.177 sum -25.164 -2.963 0.525 25.344 Atomic orbital electron populations 1.22969 0.79649 1.03655 1.00775 1.87861 1.21147 1.26961 1.94638 1.22836 0.93780 0.85158 0.96079 0.89372 1.24138 0.97588 1.01830 0.98092 1.22654 0.86972 0.97180 0.94529 0.89454 1.60126 1.20980 1.06006 1.43745 1.22437 0.94154 0.97840 0.93956 1.21645 0.93158 0.82854 0.95467 0.92051 1.86647 1.73845 1.27874 1.47766 1.22788 0.93189 0.94395 0.99914 1.61954 1.06404 1.55120 1.02982 1.22252 1.00476 0.97586 0.90629 1.19371 0.89377 0.93077 0.89838 1.21472 1.05081 1.16874 1.12569 0.92015 1.25943 1.01108 0.98087 0.94777 1.70094 1.32669 1.38103 1.16738 0.85379 0.77755 0.78624 0.78839 1.19987 1.20652 1.18691 1.22962 0.93785 0.98952 0.93824 1.22528 0.98792 0.96753 0.97109 1.22730 0.98010 0.97014 0.99711 1.22433 0.98912 0.95110 0.97179 0.93071 0.93299 0.88743 0.90903 0.88187 0.82830 0.91186 0.92900 0.77414 0.95727 0.88605 0.89975 0.92669 0.97070 0.97964 1.02530 0.92745 0.89508 0.92984 0.91773 0.91279 0.91299 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.86 113.37 1.23 1.53 16 2 O -0.39 -7.16 10.44 -148.98 -1.56 -8.72 16 3 C 0.08 1.33 4.15 30.88 0.13 1.46 16 4 H 0.09 1.19 7.90 -2.39 -0.02 1.17 16 5 C -0.18 -2.91 7.54 31.23 0.24 -2.67 16 6 C 0.10 2.03 4.00 45.26 0.18 2.21 16 7 H 0.09 2.05 7.90 -2.39 -0.02 2.03 16 8 N -0.68 -16.22 5.77 -489.79 -2.83 -19.04 16 9 C 0.05 1.15 5.26 86.31 0.45 1.61 16 10 C 0.13 4.25 3.30 30.59 0.10 4.35 16 11 H 0.06 2.64 6.78 -2.39 -0.02 2.62 16 12 O -0.56 -17.72 12.55 -148.98 -1.87 -19.59 16 13 C 0.03 0.91 4.65 86.30 0.40 1.31 16 14 N -0.54 -23.79 4.56 -927.04 -4.22 -28.01 16 15 C 0.04 1.49 9.37 127.69 1.20 2.69 16 16 C 0.21 11.64 4.55 85.56 0.39 12.03 16 17 C -0.52 -30.76 8.39 25.60 0.21 -30.54 16 18 H 0.06 3.57 7.17 -2.91 -0.02 3.55 16 19 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 20 N -0.94 -58.25 13.29 21.45 0.28 -57.96 16 21 Si 0.97 45.76 29.54 68.60 2.03 47.78 16 22 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 25 C -0.09 -1.84 0.99 -52.26 -0.05 -1.89 16 26 C -0.11 -2.40 7.63 30.89 0.24 -2.17 16 27 C -0.14 -3.06 8.08 31.23 0.25 -2.80 16 28 C -0.10 -1.91 7.53 30.88 0.23 -1.68 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 1.45 7.82 -2.39 -0.02 1.43 16 34 H 0.35 8.10 7.38 -89.70 -0.66 7.43 16 35 H 0.07 1.86 8.13 -2.39 -0.02 1.84 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.38 8.44 9.05 -74.06 -0.67 7.77 16 38 H 0.02 0.89 8.00 -2.39 -0.02 0.87 16 39 H 0.10 2.58 7.94 -2.39 -0.02 2.56 16 40 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.05 2.35 6.66 -2.38 -0.02 2.33 16 42 H 0.01 0.41 8.13 -2.39 -0.02 0.39 16 43 H 0.00 0.14 6.63 -2.39 -0.02 0.12 16 44 H -0.04 -2.58 8.12 -2.39 -0.02 -2.60 16 45 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 46 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 47 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 50 H 0.07 1.49 7.39 -2.39 -0.02 1.47 16 51 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -70.49 402.07 -2.93 -73.42 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -0.43 Total: 26.33 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 5.66 Total: -14.20 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -6.76 Total: -105.02 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -3.42 Total: -28.31 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -70.49 -2.93 -73.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591770731.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.574 kcal (2) G-P(sol) polarization free energy of solvation -70.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds