Wall clock time and date at job start Fri Apr 10 2020 18:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00353 * 2 1 4 4 H 1.08997 * 110.53707 * 31.15829 * 3 2 1 5 5 C 1.54270 * 110.48547 * 268.54847 * 3 2 1 6 6 C 1.53869 * 106.63967 * 217.73384 * 5 3 2 7 7 C 1.54268 * 106.60115 * 359.97438 * 6 5 3 8 8 C 1.54895 * 104.19476 * 23.60777 * 7 6 5 9 9 H 1.09003 * 110.74950 * 80.55726 * 8 7 6 10 10 C 1.53000 * 110.75739 * 203.74412 * 8 7 6 11 11 N 1.46495 * 109.46909 * 293.54897 * 10 8 7 12 12 C 1.34785 * 119.99783 * 179.97438 * 11 10 8 13 13 O 1.21584 * 119.99904 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00012 * 179.97438 * 12 11 10 15 15 C 1.47422 * 125.64887 * 0.02562 * 14 12 11 16 16 C 1.54908 * 104.83444 * 204.09018 * 15 14 12 17 17 C 1.55158 * 101.58349 * 322.99430 * 16 15 14 18 18 O 1.42892 * 110.71699 * 277.13855 * 17 16 15 19 19 C 1.50693 * 110.72230 * 154.03620 * 17 16 15 20 20 H 1.08004 * 119.99981 * 0.02562 * 19 17 16 21 21 C 1.37878 * 120.00078 * 179.97438 * 19 17 16 22 22 N 1.31516 * 119.99892 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 120.00337 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46700 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47549 * 119.99788 * 23 21 19 26 26 H 1.48500 * 109.47139 * 240.00508 * 23 21 19 27 27 C 1.47021 * 125.64513 * 179.71884 * 14 12 11 28 28 H 1.09003 * 109.47149 * 299.99979 * 1 2 3 29 29 H 1.09001 * 109.47258 * 59.99915 * 1 2 3 30 30 H 1.09003 * 109.47332 * 179.97438 * 1 2 3 31 31 H 1.09002 * 110.03399 * 98.42383 * 5 3 2 32 32 H 1.08995 * 110.02943 * 337.04282 * 5 3 2 33 33 H 1.08999 * 110.03405 * 119.26051 * 6 5 3 34 34 H 1.08996 * 110.03529 * 240.68999 * 6 5 3 35 35 H 1.08997 * 110.48788 * 142.28685 * 7 6 5 36 36 H 1.09000 * 110.48806 * 264.79985 * 7 6 5 37 37 H 1.09001 * 109.47000 * 53.54501 * 10 8 7 38 38 H 1.09001 * 109.47066 * 173.54524 * 10 8 7 39 39 H 0.97001 * 120.00680 * 359.97438 * 11 10 8 40 40 H 1.09003 * 110.36969 * 322.93468 * 15 14 12 41 41 H 1.08998 * 110.36536 * 85.25264 * 15 14 12 42 42 H 1.09005 * 111.00165 * 81.06522 * 16 15 14 43 43 H 1.08992 * 111.00546 * 204.91423 * 16 15 14 44 44 H 0.96703 * 114.00216 * 179.97438 * 18 17 16 45 45 H 0.96998 * 120.00129 * 180.02562 * 22 21 19 46 46 H 1.08996 * 109.88061 * 298.39048 * 27 14 12 47 47 H 1.09000 * 109.88491 * 59.56444 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3679 2.0100 0.5281 5 6 2.2633 1.7837 -1.4447 6 6 3.5944 2.5553 -1.4265 7 6 4.1045 2.5201 0.0290 8 6 3.4207 1.2723 0.6410 9 1 3.9535 0.3635 0.3608 10 6 3.3279 1.3966 2.1631 11 7 4.6748 1.3664 2.7385 12 6 4.8399 1.4621 4.0727 13 8 3.8710 1.5740 4.7987 14 7 6.0790 1.4339 4.6022 15 6 7.3354 1.3037 3.8420 16 6 8.3502 0.7116 4.8515 17 6 7.9358 1.4259 6.1651 18 8 8.5248 2.7255 6.2413 19 6 8.3174 0.5984 7.3653 20 1 8.8112 -0.3527 7.2306 21 6 8.0371 1.0558 8.6354 22 7 7.4362 2.2142 8.7994 23 14 8.5107 0.0305 10.1233 24 1 9.1693 -1.2217 9.6720 25 1 9.4473 0.8024 10.9787 26 1 7.2913 -0.3050 10.9017 27 6 6.4018 1.5342 6.0330 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.4554 2.4403 -1.7675 32 1 2.3376 0.9267 -2.1140 33 1 4.3150 2.0724 -2.0865 34 1 3.4326 3.5865 -1.7405 35 1 5.1887 2.4102 0.0507 36 1 3.8027 3.4224 0.5609 37 1 2.8433 2.3380 2.4219 38 1 2.7443 0.5662 2.5605 39 1 5.4478 1.2776 2.1593 40 1 7.2001 0.6265 2.9986 41 1 7.6717 2.2806 3.4949 42 1 8.2294 -0.3682 4.9392 43 1 9.3725 0.9674 4.5734 44 1 8.2967 3.2144 7.0439 45 1 7.2393 2.5362 9.6930 46 1 6.0610 2.4930 6.4235 47 1 5.9263 0.7191 6.5784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592000323.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:01 Heat of formation + Delta-G solvation = -134.393111 kcal Electronic energy + Delta-G solvation = -26820.718817 eV Core-core repulsion = 23003.004074 eV Total energy + Delta-G solvation = -3817.714743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.90515 -39.20617 -37.40481 -36.42165 -34.25046 -34.12490 -32.13791 -30.51279 -29.44188 -28.53418 -27.74981 -26.53690 -25.28614 -23.97107 -22.46122 -20.82111 -20.45727 -19.62027 -19.31461 -17.61558 -17.25225 -17.07287 -15.85533 -15.63906 -15.43397 -15.14717 -14.92535 -14.83548 -14.43721 -14.08117 -14.04409 -13.59166 -13.16637 -12.92673 -12.83612 -12.76141 -12.36055 -12.14870 -11.67711 -11.64962 -11.61206 -11.49800 -11.43989 -11.05860 -10.97357 -10.85618 -10.76732 -10.70527 -10.62246 -10.46044 -10.13831 -9.84478 -9.55764 -9.31577 -8.78105 -8.65086 -8.28786 -7.72097 -6.27176 -4.35460 3.11725 3.22415 3.30656 3.34132 3.51388 3.78810 4.20635 4.24468 4.29250 4.52577 4.60858 4.92132 4.97729 5.00546 5.06539 5.08495 5.16393 5.20769 5.30900 5.33081 5.41057 5.44436 5.60179 5.65420 5.72276 5.77254 5.81075 5.84262 5.90502 5.95124 6.05056 6.09743 6.16568 6.53296 6.75358 6.80694 6.90876 6.96566 7.02761 7.28807 7.35561 7.67163 7.76229 8.04391 8.56862 8.68714 9.17230 9.33427 9.46131 10.80698 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.025944 B = 0.002744 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.975597 B =10199.825629 C =10754.214064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.091 3.909 4 H 0.071 0.929 5 C -0.146 4.146 6 C -0.121 4.121 7 C -0.120 4.120 8 C -0.100 4.100 9 H 0.093 0.907 10 C 0.150 3.850 11 N -0.750 5.750 12 C 0.715 3.285 13 O -0.598 6.598 14 N -0.630 5.630 15 C 0.104 3.896 16 C -0.116 4.116 17 C 0.248 3.752 18 O -0.587 6.587 19 C -0.536 4.536 20 H 0.067 0.933 21 C 0.069 3.931 22 N -0.895 5.895 23 Si 0.904 3.096 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.121 3.879 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.392 0.608 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.386 0.614 45 H 0.270 0.730 46 H 0.061 0.939 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.509 -0.374 -20.013 21.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.032 3.968 4 H 0.089 0.911 5 C -0.184 4.184 6 C -0.159 4.159 7 C -0.158 4.158 8 C -0.118 4.118 9 H 0.111 0.889 10 C 0.026 3.974 11 N -0.407 5.407 12 C 0.417 3.583 13 O -0.477 6.477 14 N -0.367 5.367 15 C -0.020 4.020 16 C -0.154 4.154 17 C 0.208 3.792 18 O -0.397 6.397 19 C -0.574 4.574 20 H 0.085 0.915 21 C -0.134 4.134 22 N -0.535 5.535 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.002 4.002 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.226 0.774 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.238 0.762 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.024 -0.503 -19.913 21.868 hybrid contribution -0.005 -0.127 1.065 1.072 sum -9.029 -0.630 -18.848 20.909 Atomic orbital electron populations 1.22785 0.81131 1.02781 0.99948 1.87936 1.19603 1.27405 1.94902 1.22988 0.93978 0.84694 0.95113 0.91067 1.22632 0.97970 1.00475 0.97349 1.22040 0.96443 1.00295 0.97086 1.22399 1.00513 0.97532 0.95332 1.22423 0.95467 0.99842 0.94110 0.88887 1.21053 0.83817 1.01998 0.90553 1.45074 1.08659 1.81175 1.05817 1.15517 0.82826 0.78301 0.81674 1.90880 1.38520 1.58615 1.59716 1.47927 1.03194 1.75499 1.10064 1.22225 0.85285 0.99672 0.94772 1.22731 0.97839 0.99619 0.95255 1.19495 0.86023 0.82063 0.91653 1.86064 1.75345 1.30480 1.47817 1.21557 1.39742 1.05735 0.90353 0.91459 1.25085 0.93601 0.95176 0.99490 1.69588 1.41076 1.19233 1.23575 0.86334 0.78293 0.80216 0.81976 1.19594 1.20752 1.20764 1.22887 0.99380 1.01463 0.76443 0.93806 0.94229 0.89665 0.91690 0.90666 0.91481 0.91595 0.90872 0.90868 0.92016 0.91584 0.77367 0.92671 0.92051 0.90584 0.90591 0.76195 0.91974 0.92079 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.87 101.05 1.10 1.33 16 2 O -0.38 -4.01 10.42 -35.23 -0.37 -4.38 16 3 C 0.09 0.84 2.77 -25.03 -0.07 0.77 16 4 H 0.07 0.63 7.77 -51.93 -0.40 0.22 16 5 C -0.15 -1.11 6.56 -25.61 -0.17 -1.28 16 6 C -0.12 -0.87 6.80 -25.62 -0.17 -1.04 16 7 C -0.12 -1.01 5.97 -25.07 -0.15 -1.16 16 8 C -0.10 -0.98 2.68 -88.59 -0.24 -1.22 16 9 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 10 C 0.15 1.99 5.11 -4.04 -0.02 1.97 16 11 N -0.75 -11.40 5.36 -65.23 -0.35 -11.75 16 12 C 0.71 14.79 8.49 -86.91 -0.74 14.05 16 13 O -0.60 -14.80 16.67 5.29 0.09 -14.71 16 14 N -0.63 -13.24 3.33 -176.23 -0.59 -13.83 16 15 C 0.10 1.82 6.56 -2.53 -0.02 1.80 16 16 C -0.12 -2.31 6.23 -24.58 -0.15 -2.47 16 17 C 0.25 6.04 0.86 -89.93 -0.08 5.97 16 18 O -0.59 -14.90 13.07 -35.23 -0.46 -15.36 16 19 C -0.54 -14.06 8.12 -34.44 -0.28 -14.34 16 20 H 0.07 1.74 7.76 -52.48 -0.41 1.33 16 21 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 22 N -0.90 -24.02 10.97 55.43 0.61 -23.41 16 23 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.12 2.98 5.54 -3.05 -0.02 2.96 16 28 H 0.04 0.32 8.11 -51.93 -0.42 -0.10 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.65 8.02 -51.93 -0.42 0.24 16 37 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.39 4.97 6.81 -40.82 -0.28 4.69 16 40 H 0.05 0.77 7.30 -51.93 -0.38 0.39 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 43 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.39 10.14 6.98 45.56 0.32 10.46 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.06 1.65 8.07 -51.93 -0.42 1.23 16 47 H 0.06 1.69 7.82 -51.93 -0.41 1.29 16 LS Contribution 375.07 15.07 5.65 5.65 Total: -1.00 -31.04 375.07 -8.96 -40.00 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -7.43 Total: 13.16 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -1.10 Total: 9.07 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.33 Total: -48.99 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.74 Total: -34.45 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.04 -8.96 -40.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592000323.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.393 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds