Wall clock time and date at job start Fri Apr 10 2020 18:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00217 * 2 1 4 4 H 1.09004 * 110.05484 * 28.58949 * 3 2 1 5 5 C 1.54265 * 110.03770 * 267.16990 * 3 2 1 6 6 C 1.54898 * 104.19419 * 264.32744 * 5 3 2 7 7 C 1.54967 * 102.77624 * 322.08082 * 6 5 3 8 8 C 1.53883 * 110.03264 * 149.99786 * 3 2 1 9 9 H 1.09000 * 110.03058 * 359.95901 * 8 3 2 10 10 C 1.52990 * 110.03400 * 238.57173 * 8 3 2 11 11 N 1.46500 * 109.47168 * 175.68996 * 10 8 3 12 12 C 1.34775 * 120.00616 * 180.02562 * 11 10 8 13 13 O 1.21587 * 119.99641 * 0.02562 * 12 11 10 14 14 N 1.34769 * 120.00582 * 179.97438 * 12 11 10 15 15 C 1.47021 * 125.64699 * 0.03053 * 14 12 11 16 16 C 1.54320 * 107.27385 * 181.01812 * 15 14 12 17 17 C 1.55164 * 102.94087 * 22.18939 * 16 15 14 18 18 O 1.42905 * 110.99938 * 82.61424 * 17 16 15 19 19 C 1.50696 * 111.00265 * 206.42337 * 17 16 15 20 20 H 1.08000 * 120.00489 * 354.75461 * 19 17 16 21 21 C 1.37880 * 119.99837 * 174.75668 * 19 17 16 22 22 N 1.31514 * 119.99950 * 4.92520 * 21 19 17 23 23 Si 1.86803 * 120.00134 * 184.92726 * 21 19 17 24 24 H 1.48504 * 109.47095 * 94.99678 * 23 21 19 25 25 H 1.48499 * 109.47008 * 214.99514 * 23 21 19 26 26 H 1.48495 * 109.47169 * 334.99610 * 23 21 19 27 27 C 1.47425 * 125.65257 * 179.71608 * 14 12 11 28 28 H 1.08993 * 109.47425 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46868 * 299.99918 * 1 2 3 30 30 H 1.09008 * 109.46954 * 59.99262 * 1 2 3 31 31 H 1.09000 * 110.48489 * 22.99876 * 5 3 2 32 32 H 1.08992 * 110.49040 * 145.51541 * 5 3 2 33 33 H 1.08997 * 110.75617 * 80.36561 * 6 5 3 34 34 H 1.08999 * 110.75584 * 203.55732 * 6 5 3 35 35 H 1.09003 * 110.47319 * 279.23629 * 7 6 5 36 36 H 1.08992 * 110.53088 * 156.56910 * 7 6 5 37 37 H 1.09006 * 109.47083 * 55.69473 * 10 8 3 38 38 H 1.08996 * 109.47503 * 295.68983 * 10 8 3 39 39 H 0.97007 * 119.99850 * 0.02562 * 11 10 8 40 40 H 1.09003 * 109.88177 * 300.43321 * 15 14 12 41 41 H 1.09000 * 109.88275 * 61.44493 * 15 14 12 42 42 H 1.08997 * 110.72370 * 140.55221 * 16 15 14 43 43 H 1.09007 * 110.72338 * 263.82901 * 16 15 14 44 44 H 0.96704 * 113.99241 * 180.02562 * 18 17 16 45 45 H 0.97002 * 119.99993 * 180.02562 * 22 21 19 46 46 H 1.09003 * 110.36483 * 274.75147 * 27 14 12 47 47 H 1.08998 * 110.36304 * 37.06662 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3409 2.0126 0.4900 5 6 2.2906 1.7591 -1.4475 6 6 3.7775 1.3922 -1.6793 7 6 4.4276 1.7147 -0.3101 8 6 3.3684 1.2777 0.7229 9 1 3.5838 0.2686 1.0743 10 6 3.3541 2.2513 1.9029 11 7 4.6135 2.1404 2.6429 12 6 4.8264 2.9081 3.7300 13 8 3.9729 3.6925 4.0968 14 7 5.9848 2.8057 4.4111 15 6 7.0967 1.9027 4.0796 16 6 8.1920 2.1138 5.1460 17 6 7.4033 2.7133 6.3402 18 8 6.7786 1.6839 7.1098 19 6 8.2973 3.5636 7.2055 20 1 9.3563 3.6160 7.0004 21 6 7.7632 4.2745 8.2593 22 7 6.4927 4.1358 8.5693 23 14 8.8442 5.4348 9.2465 24 1 8.7097 6.8132 8.7104 25 1 8.4219 5.4140 10.6700 26 1 10.2603 4.9998 9.1439 27 6 6.3497 3.5851 5.6081 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 1.6513 1.2203 -2.1468 32 1 2.1411 2.8343 -1.5460 33 1 3.8817 0.3333 -1.9158 34 1 4.2086 2.0072 -2.4693 35 1 4.6260 2.7831 -0.2244 36 1 5.3465 1.1434 -0.1792 37 1 2.5218 2.0090 2.5638 38 1 3.2390 3.2699 1.5322 39 1 5.2944 1.5143 2.3505 40 1 6.7532 0.8684 4.1008 41 1 7.4874 2.1432 3.0909 42 1 8.6485 1.1637 5.4233 43 1 8.9461 2.8161 4.7905 44 1 6.2737 2.0106 7.8670 45 1 6.1168 4.6363 9.3104 46 1 6.7812 4.5436 5.3196 47 1 5.4764 3.7369 6.2425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592000324.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:03 Heat of formation + Delta-G solvation = -134.296333 kcal Electronic energy + Delta-G solvation = -26866.997143 eV Core-core repulsion = 23049.286596 eV Total energy + Delta-G solvation = -3817.710547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -39.94462 -39.23028 -37.38328 -36.33594 -34.20900 -34.02186 -32.16705 -30.52722 -29.44315 -28.49279 -27.73444 -26.72068 -25.24984 -23.89276 -22.39410 -20.99733 -20.28937 -19.62426 -19.29650 -17.60652 -17.15178 -17.02715 -15.93465 -15.61441 -15.43651 -15.32585 -14.94696 -14.57298 -14.41224 -14.26977 -14.04345 -13.65761 -13.12790 -12.98991 -12.80947 -12.61278 -12.12558 -11.97513 -11.92521 -11.62062 -11.57703 -11.39185 -11.32366 -11.05985 -10.99338 -10.84117 -10.81690 -10.76184 -10.56998 -10.47891 -10.16010 -9.85790 -9.57286 -9.34926 -8.78710 -8.66127 -8.32777 -7.64037 -6.26989 -4.36193 3.08536 3.22016 3.29708 3.32235 3.56621 3.79370 4.24607 4.26588 4.28827 4.56187 4.64113 4.94993 4.98717 5.00841 5.06796 5.09879 5.19818 5.30083 5.37398 5.38289 5.44210 5.47948 5.60458 5.63213 5.67646 5.74071 5.79312 5.84459 5.92778 5.95935 6.05558 6.12417 6.17694 6.54137 6.73279 6.80293 6.90414 6.97762 7.00070 7.26141 7.37189 7.67847 7.76358 8.03923 8.57507 8.68747 9.17631 9.32645 9.46950 10.80233 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.028642 B = 0.002684 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.361853 B =10427.836965 C =10681.436196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.091 3.909 4 H 0.068 0.932 5 C -0.145 4.145 6 C -0.120 4.120 7 C -0.120 4.120 8 C -0.103 4.103 9 H 0.093 0.907 10 C 0.150 3.850 11 N -0.750 5.750 12 C 0.716 3.284 13 O -0.599 6.599 14 N -0.627 5.627 15 C 0.106 3.894 16 C -0.116 4.116 17 C 0.248 3.752 18 O -0.584 6.584 19 C -0.539 4.539 20 H 0.067 0.933 21 C 0.071 3.929 22 N -0.892 5.892 23 Si 0.903 3.097 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.272 1.272 27 C 0.113 3.887 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.393 0.607 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.385 0.615 45 H 0.271 0.729 46 H 0.056 0.944 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.785 -6.346 -18.920 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.300 6.300 3 C 0.032 3.968 4 H 0.086 0.914 5 C -0.183 4.183 6 C -0.157 4.157 7 C -0.157 4.157 8 C -0.122 4.122 9 H 0.111 0.889 10 C 0.025 3.975 11 N -0.407 5.407 12 C 0.418 3.582 13 O -0.478 6.478 14 N -0.364 5.364 15 C -0.018 4.018 16 C -0.154 4.154 17 C 0.208 3.792 18 O -0.394 6.394 19 C -0.577 4.577 20 H 0.085 0.915 21 C -0.133 4.133 22 N -0.531 5.531 23 Si 0.731 3.269 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.009 4.009 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.227 0.773 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.236 0.764 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.245 -6.230 -18.984 21.253 hybrid contribution 0.270 0.949 0.795 1.267 sum -6.976 -5.281 -18.189 20.184 Atomic orbital electron populations 1.22795 0.81213 1.02689 0.99997 1.87937 1.19500 1.27646 1.94948 1.22713 0.94235 0.84668 0.95162 0.91358 1.22859 0.97689 1.01192 0.96565 1.22449 0.94676 1.01527 0.97075 1.22466 0.97620 1.01797 0.93830 1.22106 0.94216 1.00838 0.95062 0.88905 1.21151 0.86252 0.98576 0.91501 1.45056 1.20105 1.45039 1.30462 1.15509 0.81855 0.81194 0.79649 1.90879 1.44730 1.41831 1.70355 1.47887 1.14698 1.42603 1.31217 1.21916 0.88418 0.93344 0.98082 1.22593 0.96308 1.01611 0.94895 1.19654 0.87879 0.84381 0.87336 1.86073 1.71211 1.36621 1.45462 1.21484 0.94972 1.27770 1.13488 0.91475 1.25094 0.95219 0.96249 0.96723 1.69644 1.12290 1.41810 1.29314 0.86392 0.80553 0.80873 0.79106 1.20450 1.21012 1.19676 1.23143 1.00483 0.94056 0.83231 0.89711 0.93846 0.94190 0.91035 0.90766 0.91214 0.91506 0.90900 0.91148 0.91953 0.91794 0.77320 0.92698 0.93212 0.90804 0.90455 0.76417 0.91933 0.92544 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.85 101.05 1.10 1.32 16 2 O -0.38 -3.98 10.25 -35.23 -0.36 -4.34 16 3 C 0.09 0.86 3.04 -25.61 -0.08 0.78 16 4 H 0.07 0.62 7.34 -51.93 -0.38 0.24 16 5 C -0.15 -1.16 6.57 -25.07 -0.16 -1.32 16 6 C -0.12 -0.94 6.91 -24.69 -0.17 -1.11 16 7 C -0.12 -1.06 6.05 -25.03 -0.15 -1.21 16 8 C -0.10 -1.05 2.78 -89.50 -0.25 -1.30 16 9 H 0.09 1.01 7.95 -51.93 -0.41 0.59 16 10 C 0.15 1.97 4.73 -4.05 -0.02 1.95 16 11 N -0.75 -11.50 5.35 -65.23 -0.35 -11.85 16 12 C 0.72 14.87 8.49 -86.93 -0.74 14.14 16 13 O -0.60 -14.81 16.60 5.29 0.09 -14.72 16 14 N -0.63 -13.22 3.32 -176.11 -0.59 -13.80 16 15 C 0.11 1.86 6.15 -3.07 -0.02 1.84 16 16 C -0.12 -2.29 6.12 -24.89 -0.15 -2.45 16 17 C 0.25 6.04 0.89 -89.51 -0.08 5.96 16 18 O -0.58 -15.10 13.20 -35.23 -0.47 -15.57 16 19 C -0.54 -13.99 8.26 -34.44 -0.28 -14.28 16 20 H 0.07 1.70 7.79 -52.49 -0.41 1.30 16 21 C 0.07 1.84 5.26 -17.82 -0.09 1.75 16 22 N -0.89 -23.96 10.71 55.43 0.59 -23.36 16 23 Si 0.90 20.36 29.54 -169.99 -5.02 15.33 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 C 0.11 2.77 5.52 -2.41 -0.01 2.75 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.32 8.10 -51.93 -0.42 -0.10 16 30 H 0.04 0.25 8.14 -51.92 -0.42 -0.17 16 31 H 0.07 0.54 8.07 -51.93 -0.42 0.13 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.68 7.77 -51.93 -0.40 0.28 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.86 8.02 -51.93 -0.42 0.45 16 39 H 0.39 5.11 7.32 -40.82 -0.30 4.81 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 44 H 0.38 10.31 7.18 45.56 0.33 10.64 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 46 H 0.06 1.42 8.03 -51.93 -0.42 1.00 16 47 H 0.08 2.28 7.50 -51.93 -0.39 1.89 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -30.89 374.73 -8.99 -39.88 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -7.42 Total: 13.97 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -1.12 Total: 8.82 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.34 Total: -49.01 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.74 Total: -34.63 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.89 -8.99 -39.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592000324.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.415 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds