Wall clock time and date at job start Fri Apr 10 2020 18:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00217 * 2 1 4 4 H 1.09004 * 110.05484 * 28.58949 * 3 2 1 5 5 C 1.54265 * 110.03770 * 267.16990 * 3 2 1 6 6 C 1.54898 * 104.19419 * 264.32744 * 5 3 2 7 7 C 1.54967 * 102.77624 * 322.08082 * 6 5 3 8 8 C 1.53883 * 110.03264 * 149.99786 * 3 2 1 9 9 H 1.09000 * 110.03058 * 359.95901 * 8 3 2 10 10 C 1.52990 * 110.03400 * 238.57173 * 8 3 2 11 11 N 1.46500 * 109.47168 * 175.68996 * 10 8 3 12 12 C 1.34775 * 120.00616 * 180.02562 * 11 10 8 13 13 O 1.21587 * 119.99641 * 0.02562 * 12 11 10 14 14 N 1.34769 * 120.00582 * 179.97438 * 12 11 10 15 15 C 1.47021 * 125.64699 * 0.03053 * 14 12 11 16 16 C 1.54320 * 107.27385 * 181.01812 * 15 14 12 17 17 C 1.55164 * 102.94087 * 22.18939 * 16 15 14 18 18 O 1.42905 * 110.99938 * 82.61424 * 17 16 15 19 19 C 1.50696 * 111.00265 * 206.42337 * 17 16 15 20 20 H 1.08000 * 120.00489 * 354.75461 * 19 17 16 21 21 C 1.37880 * 119.99837 * 174.75668 * 19 17 16 22 22 N 1.31514 * 119.99950 * 4.92520 * 21 19 17 23 23 Si 1.86803 * 120.00134 * 184.92726 * 21 19 17 24 24 H 1.48504 * 109.47095 * 94.99678 * 23 21 19 25 25 H 1.48499 * 109.47008 * 214.99514 * 23 21 19 26 26 H 1.48495 * 109.47169 * 334.99610 * 23 21 19 27 27 C 1.47425 * 125.65257 * 179.71608 * 14 12 11 28 28 H 1.08993 * 109.47425 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46868 * 299.99918 * 1 2 3 30 30 H 1.09008 * 109.46954 * 59.99262 * 1 2 3 31 31 H 1.09000 * 110.48489 * 22.99876 * 5 3 2 32 32 H 1.08992 * 110.49040 * 145.51541 * 5 3 2 33 33 H 1.08997 * 110.75617 * 80.36561 * 6 5 3 34 34 H 1.08999 * 110.75584 * 203.55732 * 6 5 3 35 35 H 1.09003 * 110.47319 * 279.23629 * 7 6 5 36 36 H 1.08992 * 110.53088 * 156.56910 * 7 6 5 37 37 H 1.09006 * 109.47083 * 55.69473 * 10 8 3 38 38 H 1.08996 * 109.47503 * 295.68983 * 10 8 3 39 39 H 0.97007 * 119.99850 * 0.02562 * 11 10 8 40 40 H 1.09003 * 109.88177 * 300.43321 * 15 14 12 41 41 H 1.09000 * 109.88275 * 61.44493 * 15 14 12 42 42 H 1.08997 * 110.72370 * 140.55221 * 16 15 14 43 43 H 1.09007 * 110.72338 * 263.82901 * 16 15 14 44 44 H 0.96704 * 113.99241 * 180.02562 * 18 17 16 45 45 H 0.97002 * 119.99993 * 180.02562 * 22 21 19 46 46 H 1.09003 * 110.36483 * 274.75147 * 27 14 12 47 47 H 1.08998 * 110.36304 * 37.06662 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3409 2.0126 0.4900 5 6 2.2906 1.7591 -1.4475 6 6 3.7775 1.3922 -1.6793 7 6 4.4276 1.7147 -0.3101 8 6 3.3684 1.2777 0.7229 9 1 3.5838 0.2686 1.0743 10 6 3.3541 2.2513 1.9029 11 7 4.6135 2.1404 2.6429 12 6 4.8264 2.9081 3.7300 13 8 3.9729 3.6925 4.0968 14 7 5.9848 2.8057 4.4111 15 6 7.0967 1.9027 4.0796 16 6 8.1920 2.1138 5.1460 17 6 7.4033 2.7133 6.3402 18 8 6.7786 1.6839 7.1098 19 6 8.2973 3.5636 7.2055 20 1 9.3563 3.6160 7.0004 21 6 7.7632 4.2745 8.2593 22 7 6.4927 4.1358 8.5693 23 14 8.8442 5.4348 9.2465 24 1 8.7097 6.8132 8.7104 25 1 8.4219 5.4140 10.6700 26 1 10.2603 4.9998 9.1439 27 6 6.3497 3.5851 5.6081 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 1.6513 1.2203 -2.1468 32 1 2.1411 2.8343 -1.5460 33 1 3.8817 0.3333 -1.9158 34 1 4.2086 2.0072 -2.4693 35 1 4.6260 2.7831 -0.2244 36 1 5.3465 1.1434 -0.1792 37 1 2.5218 2.0090 2.5638 38 1 3.2390 3.2699 1.5322 39 1 5.2944 1.5143 2.3505 40 1 6.7532 0.8684 4.1008 41 1 7.4874 2.1432 3.0909 42 1 8.6485 1.1637 5.4233 43 1 8.9461 2.8161 4.7905 44 1 6.2737 2.0106 7.8670 45 1 6.1168 4.6363 9.3104 46 1 6.7812 4.5436 5.3196 47 1 5.4764 3.7369 6.2425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592000324.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:03 Heat of formation + Delta-G solvation = -156.820183 kcal Electronic energy + Delta-G solvation = -26867.973850 eV Core-core repulsion = 23049.286596 eV Total energy + Delta-G solvation = -3818.687254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.33057 -40.26184 -39.05398 -37.22804 -36.04424 -35.28538 -34.18560 -32.01951 -30.65836 -29.49189 -29.15589 -27.49306 -26.91480 -25.13654 -23.91225 -21.71059 -21.47329 -21.24867 -20.62767 -19.27113 -18.82193 -18.02509 -17.16002 -16.95495 -16.71853 -16.67961 -16.20077 -16.10290 -15.61509 -15.45524 -15.00260 -14.86909 -14.67460 -14.58728 -14.29757 -13.75300 -13.54562 -13.48400 -13.25899 -12.86374 -12.76298 -12.66224 -12.51109 -12.32162 -12.24973 -12.19612 -12.08552 -11.95231 -11.84682 -11.58860 -11.48665 -11.34389 -11.19155 -10.64201 -10.52012 -10.32842 -10.19208 -9.31372 -8.24932 -6.41531 1.42313 1.44926 1.54909 1.66329 2.15200 2.38819 2.77452 3.01800 3.13722 3.52218 3.60670 3.81606 3.85363 4.11861 4.19325 4.20473 4.28370 4.35480 4.38318 4.42803 4.48485 4.53895 4.62929 4.65465 4.76366 4.77639 4.81350 4.87622 4.90697 5.00281 5.06602 5.11090 5.11436 5.19779 5.25266 5.31204 5.39419 5.45448 5.48056 5.51629 5.77213 6.04271 6.18447 6.29432 6.66274 7.06878 7.29742 7.39051 7.56980 8.80702 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.028642 B = 0.002684 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.361853 B =10427.836965 C =10681.436196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.087 3.913 4 H 0.066 0.934 5 C -0.142 4.142 6 C -0.116 4.116 7 C -0.118 4.118 8 C -0.094 4.094 9 H 0.089 0.911 10 C 0.151 3.849 11 N -0.726 5.726 12 C 0.709 3.291 13 O -0.647 6.647 14 N -0.633 5.633 15 C 0.107 3.893 16 C -0.110 4.110 17 C 0.231 3.769 18 O -0.590 6.590 19 C -0.555 4.555 20 H 0.071 0.929 21 C 0.024 3.976 22 N -0.917 5.917 23 Si 0.965 3.035 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.263 1.263 27 C 0.127 3.873 28 H 0.096 0.904 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.045 0.955 38 H 0.061 0.939 39 H 0.409 0.591 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.375 0.625 45 H 0.269 0.731 46 H 0.042 0.958 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.591 -7.133 -21.096 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.320 6.320 3 C 0.029 3.971 4 H 0.084 0.916 5 C -0.179 4.179 6 C -0.153 4.153 7 C -0.155 4.155 8 C -0.113 4.113 9 H 0.107 0.893 10 C 0.027 3.973 11 N -0.383 5.383 12 C 0.411 3.589 13 O -0.530 6.530 14 N -0.369 5.369 15 C -0.015 4.015 16 C -0.148 4.148 17 C 0.190 3.810 18 O -0.398 6.398 19 C -0.593 4.593 20 H 0.089 0.911 21 C -0.177 4.177 22 N -0.556 5.556 23 Si 0.790 3.210 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.187 1.187 27 C 0.003 3.997 28 H 0.114 0.886 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.245 0.755 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.225 0.775 45 H 0.079 0.921 46 H 0.060 0.940 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.024 -7.073 -21.220 23.165 hybrid contribution -0.160 1.167 1.463 1.878 sum -6.184 -5.906 -19.758 21.529 Atomic orbital electron populations 1.22950 0.79974 1.03686 1.00592 1.87897 1.20945 1.28080 1.95121 1.22759 0.93698 0.84531 0.96142 0.91570 1.22849 0.97994 1.01709 0.95398 1.22437 0.94353 1.01771 0.96758 1.22468 0.97552 1.01645 0.93865 1.22018 0.95563 0.99509 0.94164 0.89265 1.21266 0.84593 0.99458 0.91978 1.44870 1.21109 1.43727 1.28606 1.15749 0.81227 0.81370 0.80554 1.90841 1.46258 1.44022 1.71849 1.47832 1.15869 1.42858 1.30347 1.22121 0.86612 0.93452 0.99311 1.22601 0.96761 1.02183 0.93265 1.19920 0.88042 0.84600 0.88393 1.86064 1.71212 1.37291 1.45274 1.21820 0.95417 1.28159 1.13942 0.91068 1.25867 0.96294 0.97648 0.97862 1.69766 1.13694 1.42489 1.29666 0.85430 0.79266 0.78768 0.77492 1.20393 1.21024 1.18717 1.22694 0.98655 0.94209 0.84167 0.88594 0.94021 0.92834 0.90498 0.89992 0.91244 0.90213 0.91301 0.90114 0.93613 0.92074 0.75474 0.91097 0.88973 0.89667 0.89081 0.77494 0.92115 0.93985 0.94363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.85 113.37 1.23 1.57 16 2 O -0.40 -7.84 10.25 -148.98 -1.53 -9.36 16 3 C 0.09 1.53 3.04 31.32 0.10 1.62 16 4 H 0.07 1.17 7.34 -2.39 -0.02 1.15 16 5 C -0.14 -1.95 6.57 31.67 0.21 -1.74 16 6 C -0.12 -1.51 6.91 31.92 0.22 -1.29 16 7 C -0.12 -1.78 6.05 31.70 0.19 -1.59 16 8 C -0.09 -1.76 2.78 -10.07 -0.03 -1.78 16 9 H 0.09 1.78 7.95 -2.39 -0.02 1.76 16 10 C 0.15 3.88 4.73 86.38 0.41 4.29 16 11 N -0.73 -21.38 5.35 -478.56 -2.56 -23.95 16 12 C 0.71 29.46 8.49 179.06 1.52 30.98 16 13 O -0.65 -33.00 16.60 -3.99 -0.07 -33.06 16 14 N -0.63 -26.37 3.32 -829.35 -2.76 -29.12 16 15 C 0.11 3.45 6.15 86.73 0.53 3.99 16 16 C -0.11 -4.12 6.12 31.78 0.19 -3.93 16 17 C 0.23 11.25 0.89 -10.07 -0.01 11.24 16 18 O -0.59 -30.93 13.20 -148.98 -1.97 -32.89 16 19 C -0.56 -28.86 8.26 25.60 0.21 -28.65 16 20 H 0.07 3.55 7.79 -2.91 -0.02 3.53 16 21 C 0.02 1.26 5.26 84.66 0.45 1.71 16 22 N -0.92 -50.70 10.71 21.45 0.23 -50.47 16 23 Si 0.97 41.90 29.54 68.60 2.03 43.93 16 24 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 26 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 27 C 0.13 6.36 5.52 86.93 0.48 6.84 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 0.59 8.10 -2.38 -0.02 0.57 16 30 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.08 0.99 8.07 -2.39 -0.02 0.97 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 1.13 7.77 -2.39 -0.02 1.11 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.06 1.63 8.02 -2.39 -0.02 1.61 16 39 H 0.41 9.53 7.32 -92.70 -0.68 8.85 16 40 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16 42 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.09 3.13 8.03 -2.38 -0.02 3.11 16 44 H 0.38 20.87 7.18 -74.05 -0.53 20.34 16 45 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 46 H 0.04 2.18 8.03 -2.39 -0.02 2.16 16 47 H 0.04 2.23 7.50 -2.39 -0.02 2.21 16 Total: -1.00 -68.66 374.73 -1.17 -69.83 By element: Atomic # 1 Polarization: 42.10 SS G_CDS: -0.25 Total: 41.85 kcal Atomic # 6 Polarization: 17.55 SS G_CDS: 5.70 Total: 23.25 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -5.09 Total: -103.54 kcal Atomic # 8 Polarization: -71.76 SS G_CDS: -3.56 Total: -75.32 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -68.66 -1.17 -69.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592000324.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.993 kcal (2) G-P(sol) polarization free energy of solvation -68.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds