Wall clock time and date at job start Fri Apr 10 2020 18:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42893 * 114.00271 * 2 1 4 4 C 1.53007 * 109.47159 * 179.97438 * 3 2 1 5 5 C 1.53000 * 112.84997 * 295.63671 * 4 3 2 6 6 N 1.46497 * 109.47342 * 293.64134 * 5 4 3 7 7 C 1.34770 * 120.00094 * 175.02101 * 6 5 4 8 8 O 1.21589 * 120.00090 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00085 * 179.97438 * 7 6 5 10 10 C 1.47429 * 125.64681 * 0.04942 * 9 7 6 11 11 C 1.54905 * 104.83122 * 204.08932 * 10 9 7 12 12 C 1.55406 * 101.66464 * 323.07317 * 11 10 9 13 13 O 1.42894 * 110.69602 * 277.04608 * 12 11 10 14 14 C 1.50702 * 110.85252 * 153.69886 * 12 11 10 15 15 H 1.08005 * 119.99819 * 5.08835 * 14 12 11 16 16 C 1.37874 * 120.00217 * 185.08191 * 14 12 11 17 17 N 1.31523 * 119.99759 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00318 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46843 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46642 * 120.00276 * 18 16 14 21 21 H 1.48493 * 109.47176 * 240.00120 * 18 16 14 22 22 C 1.47022 * 125.65098 * 179.97438 * 9 7 6 23 23 C 1.53781 * 113.69107 * 66.90466 * 4 3 2 24 24 C 1.53782 * 87.08270 * 89.12573 * 23 4 3 25 25 C 1.53782 * 87.07880 * 25.43431 * 24 23 4 26 26 H 1.08999 * 109.47588 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47148 * 300.00478 * 1 2 3 28 28 H 1.09004 * 109.47021 * 59.99931 * 1 2 3 29 29 H 1.08995 * 109.47455 * 60.00184 * 3 2 1 30 30 H 1.08998 * 109.47201 * 299.99489 * 3 2 1 31 31 H 1.08999 * 109.47037 * 173.63639 * 5 4 3 32 32 H 1.08998 * 109.46844 * 53.64587 * 5 4 3 33 33 H 0.96997 * 119.99734 * 355.02737 * 6 5 4 34 34 H 1.08994 * 110.36208 * 322.92648 * 10 9 7 35 35 H 1.08998 * 110.36802 * 85.13963 * 10 9 7 36 36 H 1.09002 * 111.00521 * 81.05826 * 11 10 9 37 37 H 1.09000 * 111.00420 * 204.91427 * 11 10 9 38 38 H 0.96701 * 114.00085 * 174.82399 * 13 12 11 39 39 H 0.96993 * 119.99648 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.88212 * 298.40040 * 22 9 7 41 41 H 1.09004 * 109.87972 * 59.40823 * 22 9 7 42 42 H 1.08994 * 113.61855 * 203.67650 * 23 4 3 43 43 H 1.09007 * 113.61351 * 334.58486 * 23 4 3 44 44 H 1.09001 * 113.61614 * 270.88522 * 24 23 4 45 45 H 1.08998 * 113.61628 * 139.98242 * 24 23 4 46 46 H 1.09001 * 113.61607 * 220.02079 * 25 24 23 47 47 H 1.08996 * 113.61419 * 89.11328 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.0790 0.5297 1.2721 6 7 3.8262 1.4055 2.4189 7 6 4.1296 0.9894 3.6644 8 8 4.6137 -0.1127 3.8362 9 7 3.8975 1.7954 4.7194 10 6 3.3180 3.1495 4.6551 11 6 3.8181 3.8562 5.9396 12 6 3.7791 2.6956 6.9723 13 8 2.4619 2.5356 7.5027 14 6 4.7762 2.9278 8.0782 15 1 5.3355 3.8510 8.1159 16 6 4.9742 1.9619 9.0419 17 7 4.2933 0.8376 8.9958 18 14 6.2107 2.2494 10.4124 19 1 6.8407 3.5829 10.2388 20 1 5.5165 2.1972 11.7242 21 1 7.2571 1.1970 10.3638 22 6 4.1788 1.4692 6.1251 23 6 4.1083 0.5848 -1.2944 24 6 4.1693 2.0214 -1.8397 25 6 4.2570 2.4889 -0.3773 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.6887 1.8463 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 5.1520 0.3684 1.1676 32 1 3.5815 -0.4274 1.4291 33 1 3.4403 2.2848 2.2818 34 1 3.6766 3.6738 3.7695 35 1 2.2293 3.0963 4.6488 36 1 4.8347 4.2276 5.8106 37 1 3.1435 4.6615 6.2303 38 1 2.3648 1.7750 8.0919 39 1 4.4329 0.1580 9.6736 40 1 3.5929 0.6017 6.4288 41 1 5.2413 1.2616 6.2520 42 1 5.0879 0.1244 -1.1664 43 1 3.4052 -0.0551 -1.8276 44 1 3.2560 2.3359 -2.3447 45 1 5.0683 2.2305 -2.4196 46 1 3.6739 3.3862 -0.1700 47 1 5.2773 2.5490 0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592020893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:12 Heat of formation + Delta-G solvation = -102.931840 kcal Electronic energy + Delta-G solvation = -27285.601504 eV Core-core repulsion = 23469.251023 eV Total energy + Delta-G solvation = -3816.350480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.38124 -39.27894 -37.37459 -37.18625 -34.21955 -33.95373 -32.20247 -30.18716 -29.19092 -27.83329 -27.02292 -26.13529 -25.47710 -24.67183 -22.78609 -22.06584 -19.65674 -19.45126 -18.70748 -17.62809 -17.03975 -16.58845 -16.12199 -16.00103 -15.59969 -15.21058 -14.88867 -14.79683 -14.41264 -14.17873 -13.75182 -13.63878 -12.99347 -12.87005 -12.80072 -12.78341 -12.50853 -12.09210 -12.04740 -11.78766 -11.62344 -11.47732 -11.35103 -11.03941 -10.79661 -10.71722 -10.64028 -10.53081 -10.44438 -10.36461 -10.14356 -9.81130 -9.53478 -9.28756 -8.72312 -8.65833 -8.28796 -7.69755 -6.25380 -4.33939 3.14650 3.23142 3.31271 3.34550 3.49902 3.82708 4.25543 4.29920 4.36311 4.47960 4.59234 4.70773 4.81248 5.02188 5.02449 5.15017 5.21228 5.29655 5.31897 5.39749 5.49183 5.52311 5.55555 5.65687 5.71006 5.75576 5.79371 5.81633 5.96363 6.03014 6.11932 6.17347 6.18630 6.52782 6.74193 6.84900 6.92628 6.96228 7.04395 7.31002 7.35565 7.70556 7.76114 8.07000 8.59502 8.70642 9.21051 9.32082 9.40652 10.82503 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.022719 B = 0.003096 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.151385 B = 9041.979636 C = 9287.700261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.087 3.913 4 C -0.095 4.095 5 C 0.160 3.840 6 N -0.749 5.749 7 C 0.715 3.285 8 O -0.596 6.596 9 N -0.631 5.631 10 C 0.104 3.896 11 C -0.116 4.116 12 C 0.248 3.752 13 O -0.585 6.585 14 C -0.537 4.537 15 H 0.067 0.933 16 C 0.070 3.930 17 N -0.893 5.893 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.124 3.876 23 C -0.119 4.119 24 C -0.142 4.142 25 C -0.127 4.127 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.390 0.610 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.382 0.618 39 H 0.269 0.731 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.755 3.699 -20.187 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.010 3.990 4 C -0.096 4.096 5 C 0.035 3.965 6 N -0.406 5.406 7 C 0.417 3.583 8 O -0.475 6.475 9 N -0.369 5.369 10 C -0.019 4.019 11 C -0.154 4.154 12 C 0.208 3.792 13 O -0.394 6.394 14 C -0.575 4.575 15 H 0.085 0.915 16 C -0.133 4.133 17 N -0.531 5.531 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C 0.001 3.999 23 C -0.157 4.157 24 C -0.180 4.180 25 C -0.165 4.165 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.223 0.777 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.232 0.768 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.400 3.001 -20.364 21.049 hybrid contribution 0.300 0.171 1.056 1.111 sum -4.100 3.172 -19.309 19.992 Atomic orbital electron populations 1.22733 0.81015 1.02843 0.99834 1.87886 1.19522 1.27397 1.95327 1.22205 0.91629 0.85060 1.00104 1.22098 0.93584 0.98212 0.95672 1.20994 0.99731 0.93569 0.82200 1.45061 1.70319 1.20157 1.05050 1.15511 0.79372 0.83707 0.79710 1.90886 1.51464 1.20667 1.84509 1.47958 1.65263 1.16258 1.07401 1.22202 0.97618 0.83390 0.98688 1.22760 1.00893 0.98319 0.93429 1.19558 0.81905 0.88146 0.89633 1.86099 1.31852 1.54011 1.67438 1.21518 1.22686 1.03466 1.09840 0.91527 1.25079 0.95767 0.94583 0.97883 1.69717 1.41202 1.06882 1.35330 0.86355 0.80831 0.78398 0.81358 1.19615 1.20775 1.20768 1.22826 1.00956 1.00351 0.75717 1.22841 1.01499 0.96557 0.94837 1.22858 1.02058 0.96759 0.96310 1.22961 1.01171 0.96061 0.96295 0.89578 0.93962 0.94319 0.92969 0.93068 0.92070 0.90900 0.77678 0.92791 0.92225 0.90536 0.90682 0.76788 0.92072 0.91994 0.91838 0.89562 0.90663 0.90313 0.91208 0.91251 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.46 10.22 -35.23 -0.36 -4.82 16 3 C 0.09 0.86 5.09 37.16 0.19 1.05 16 4 C -0.10 -0.95 0.63 -153.69 -0.10 -1.05 16 5 C 0.16 2.20 4.94 -4.04 -0.02 2.18 16 6 N -0.75 -11.59 5.18 -65.23 -0.34 -11.93 16 7 C 0.72 14.98 8.49 -86.92 -0.74 14.24 16 8 O -0.60 -15.01 16.67 5.29 0.09 -14.92 16 9 N -0.63 -13.36 3.33 -176.24 -0.59 -13.95 16 10 C 0.10 1.83 6.57 -2.53 -0.02 1.81 16 11 C -0.12 -2.30 6.24 -24.45 -0.15 -2.45 16 12 C 0.25 6.03 0.86 -89.80 -0.08 5.95 16 13 O -0.59 -14.74 13.08 -35.23 -0.46 -15.20 16 14 C -0.54 -14.13 8.13 -34.44 -0.28 -14.41 16 15 H 0.07 1.72 7.79 -52.48 -0.41 1.32 16 16 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 17 N -0.89 -24.09 10.98 55.43 0.61 -23.48 16 18 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.12 3.07 5.23 -3.07 -0.02 3.06 16 23 C -0.12 -1.04 7.17 -25.92 -0.19 -1.23 16 24 C -0.14 -1.03 7.73 -25.92 -0.20 -1.23 16 25 C -0.13 -1.04 6.90 -25.92 -0.18 -1.22 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.53 7.59 -51.93 -0.39 0.14 16 30 H 0.05 0.42 7.31 -51.93 -0.38 0.04 16 31 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 32 H 0.07 1.18 7.88 -51.93 -0.41 0.77 16 33 H 0.39 5.05 6.35 -40.82 -0.26 4.79 16 34 H 0.05 0.75 7.30 -51.93 -0.38 0.38 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.38 9.88 7.47 45.56 0.34 10.22 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.06 1.69 7.92 -51.93 -0.41 1.28 16 41 H 0.06 1.73 7.81 -51.93 -0.41 1.33 16 42 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 43 H 0.07 0.68 8.03 -51.92 -0.42 0.26 16 44 H 0.08 0.51 7.61 -51.93 -0.40 0.12 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 47 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 375.12 15.07 5.65 5.65 Total: -1.00 -31.30 375.12 -8.45 -39.76 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -7.28 Total: 13.41 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -0.75 Total: 9.87 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.32 Total: -49.36 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.73 Total: -34.94 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.30 -8.45 -39.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592020893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.177 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds