Wall clock time and date at job start Fri Apr 10 2020 18:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 N 1.46506 * 109.46691 * 179.97438 * 3 2 1 5 5 C 1.34776 * 120.00349 * 269.99847 * 4 3 2 6 6 O 1.21583 * 120.00062 * 180.02562 * 5 4 3 7 7 N 1.34776 * 119.99588 * 0.02562 * 5 4 3 8 8 C 1.46510 * 119.99645 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.46729 * 179.97438 * 8 7 5 10 10 O 1.21287 * 120.00112 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99341 * 179.97438 * 9 8 7 12 12 C 1.37104 * 119.99405 * 179.97438 * 11 9 8 13 13 H 1.07994 * 120.00186 * 0.02562 * 12 11 9 14 14 C 1.38951 * 119.99544 * 180.02562 * 12 11 9 15 15 N 1.31414 * 119.99882 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00436 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.46809 * 89.99834 * 16 14 12 18 18 H 1.48495 * 109.47262 * 210.00218 * 16 14 12 19 19 H 1.48499 * 109.46957 * 330.00190 * 16 14 12 20 20 C 1.46501 * 119.99707 * 90.00486 * 4 3 2 21 21 H 1.09000 * 110.28626 * 357.87093 * 20 4 3 22 22 C 1.54266 * 110.32352 * 119.99790 * 20 4 3 23 23 C 1.54382 * 105.05691 * 118.89515 * 22 20 4 24 24 N 1.48552 * 104.59579 * 23.85414 * 23 22 20 25 25 C 1.46903 * 110.99826 * 200.95744 * 24 23 22 26 26 C 1.48556 * 104.22268 * 320.51463 * 24 23 22 27 27 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 28 28 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 31 31 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 32 32 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 33 33 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 34 34 H 0.97000 * 120.00677 * 359.97438 * 7 5 4 35 35 H 1.08994 * 109.46912 * 299.99959 * 8 7 5 36 36 H 1.08998 * 109.46866 * 60.00176 * 8 7 5 37 37 H 0.96998 * 120.00398 * 0.02562 * 11 9 8 38 38 H 0.97000 * 120.00151 * 180.02562 * 15 14 12 39 39 H 1.08998 * 110.32373 * 237.79342 * 22 20 4 40 40 H 1.08996 * 110.32349 * 359.90021 * 22 20 4 41 41 H 1.09001 * 110.41016 * 142.63236 * 23 22 20 42 42 H 1.09003 * 110.41119 * 264.95225 * 23 22 20 43 43 H 1.08997 * 109.47275 * 59.87574 * 25 24 23 44 44 H 1.09004 * 109.46944 * 179.87347 * 25 24 23 45 45 H 1.08999 * 109.47292 * 299.87347 * 25 24 23 46 46 H 1.08999 * 110.41187 * 280.70133 * 26 24 23 47 47 H 1.09005 * 110.41515 * 158.26277 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1784 1.4428 1.1681 6 8 5.3943 1.4432 1.1685 7 7 3.5041 1.4424 2.3350 8 6 4.2361 1.4421 3.6040 9 6 3.2563 1.4424 4.7490 10 8 2.0640 1.4424 4.5269 11 7 3.7052 1.4417 6.0199 12 6 2.8138 1.4425 7.0616 13 1 1.7521 1.4433 6.8638 14 6 3.2765 1.4422 8.3718 15 7 2.4222 1.4425 9.3703 16 14 5.1129 1.4415 8.7139 17 1 5.6000 2.8414 8.8046 18 1 5.3773 0.7413 9.9965 19 1 5.8213 0.7413 7.6125 20 6 4.2380 1.4425 -1.2679 21 1 3.5424 1.4044 -2.1062 22 6 5.1323 2.6953 -1.3700 23 6 6.5732 2.1518 -1.4784 24 7 6.4150 0.7770 -2.0186 25 6 7.5977 -0.0433 -1.7249 26 6 5.2138 0.2475 -1.3232 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 2.5341 1.4424 2.3347 35 1 4.8627 0.5521 3.6617 36 1 4.8627 2.3321 3.6622 37 1 4.6588 1.4413 6.1975 38 1 2.7451 1.4427 10.2850 39 1 4.8769 3.2712 -2.2594 40 1 5.0245 3.3111 -0.4771 41 1 7.1599 2.7641 -2.1632 42 1 7.0440 2.1243 -0.4957 43 1 7.7390 -0.1040 -0.6458 44 1 7.4545 -1.0453 -2.1295 45 1 8.4773 0.4106 -2.1815 46 1 5.4712 -0.0801 -0.3160 47 1 4.7769 -0.5740 -1.8910 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592023221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:16 Heat of formation + Delta-G solvation = -72.485891 kcal Electronic energy + Delta-G solvation = -27132.439847 eV Core-core repulsion = 23349.702353 eV Total energy + Delta-G solvation = -3782.737494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.83154 -40.43004 -39.11270 -37.17759 -36.29408 -35.30787 -33.99326 -33.84564 -32.00328 -29.88945 -28.98469 -27.06146 -26.60009 -25.72080 -23.00865 -22.39964 -22.06416 -21.46589 -20.89757 -20.34962 -18.83490 -17.85747 -17.52569 -16.93780 -16.86728 -16.57311 -16.27889 -15.89250 -15.72884 -15.46368 -15.09107 -15.04229 -14.85188 -14.43114 -14.31795 -14.29346 -14.01368 -13.81881 -13.39142 -13.10247 -13.05367 -12.95851 -12.68566 -12.46475 -12.38682 -12.37270 -12.15275 -12.09602 -12.01992 -11.81770 -11.60083 -11.59770 -11.04327 -10.66770 -10.35039 -10.22495 -9.56281 -9.45955 -8.47038 -6.08880 1.29300 1.32255 1.41690 1.52400 1.76787 2.10387 2.18699 2.63207 2.96752 3.09258 3.24592 3.67932 3.73996 3.92386 3.96834 4.10834 4.15430 4.32162 4.37285 4.41036 4.41397 4.44165 4.52885 4.56153 4.61281 4.68357 4.76560 4.87848 4.92708 4.96334 4.99659 5.08243 5.16060 5.18621 5.23580 5.31473 5.43046 5.47830 5.56920 5.80154 5.86756 5.95555 6.00966 6.47316 6.76454 6.90596 7.26710 7.52803 7.76233 8.69412 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015253 B = 0.003406 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.236050 B = 8217.948925 C = 9584.783681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C 0.106 3.894 4 N -0.617 5.617 5 C 0.705 3.295 6 O -0.613 6.613 7 N -0.731 5.731 8 C 0.139 3.861 9 C 0.446 3.554 10 O -0.613 6.613 11 N -0.578 5.578 12 C -0.331 4.331 13 H 0.064 0.936 14 C -0.007 4.007 15 N -0.925 5.925 16 Si 0.958 3.042 17 H -0.256 1.256 18 H -0.273 1.273 19 H -0.235 1.235 20 C 0.163 3.837 21 H 0.130 0.870 22 C -0.124 4.124 23 C 0.040 3.960 24 N -0.512 5.512 25 C 0.017 3.983 26 C 0.022 3.978 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.407 0.593 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.391 0.609 38 H 0.281 0.719 39 H 0.095 0.905 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.030 0.970 43 H 0.013 0.987 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.038 0.962 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.654 -0.675 -24.712 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C -0.016 4.016 4 N -0.353 5.353 5 C 0.407 3.593 6 O -0.494 6.494 7 N -0.390 5.390 8 C 0.010 3.990 9 C 0.233 3.767 10 O -0.498 6.498 11 N -0.218 5.218 12 C -0.460 4.460 13 H 0.082 0.918 14 C -0.207 4.207 15 N -0.565 5.565 16 Si 0.778 3.222 17 H -0.181 1.181 18 H -0.197 1.197 19 H -0.158 1.158 20 C 0.059 3.941 21 H 0.148 0.852 22 C -0.163 4.163 23 C -0.088 4.088 24 N -0.236 5.236 25 C -0.132 4.132 26 C -0.107 4.107 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.132 0.868 33 H 0.085 0.915 34 H 0.246 0.754 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.227 0.773 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.048 0.952 43 H 0.031 0.969 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.057 0.943 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.631 -0.678 -25.201 26.068 hybrid contribution 0.366 -0.158 2.186 2.222 sum 6.997 -0.836 -23.015 24.070 Atomic orbital electron populations 1.21689 0.94137 1.02346 1.02448 1.21906 0.96992 0.96621 1.02066 1.21843 0.77910 0.97541 1.04345 1.47307 1.06858 1.77354 1.03766 1.15892 0.85004 0.77778 0.80668 1.90856 1.12369 1.59314 1.86817 1.44995 1.10981 1.79422 1.03612 1.20643 0.92679 1.04569 0.81061 1.20487 0.89565 0.82318 0.84332 1.90517 1.18505 1.56308 1.84510 1.41921 1.08563 1.66320 1.04960 1.19032 0.90809 1.50755 0.85391 0.91767 1.26041 1.04753 0.95723 0.94158 1.69776 1.37357 1.49284 1.00088 0.85462 0.76942 0.80081 0.79751 1.18052 1.19747 1.15813 1.21803 0.93781 0.94253 0.84254 0.85218 1.22603 0.94279 0.97219 1.02216 1.23000 0.97495 0.90433 0.97910 1.65454 1.03617 1.02675 1.51822 1.22485 0.93548 0.98720 0.98477 1.23477 0.91867 0.97821 0.97579 0.93494 0.90562 0.92348 0.94233 0.90376 0.86826 0.91549 0.75383 0.88545 0.88257 0.77310 0.90900 0.88645 0.92727 0.89490 0.95168 0.96851 0.90521 0.90305 0.94341 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 71.98 0.71 -1.62 16 2 C -0.14 -2.41 6.26 30.60 0.19 -2.22 16 3 C 0.11 1.86 5.15 86.38 0.44 2.30 16 4 N -0.62 -13.56 2.46 -810.72 -1.99 -15.55 16 5 C 0.71 20.85 7.19 179.05 1.29 22.14 16 6 O -0.61 -20.82 12.19 -3.98 -0.05 -20.87 16 7 N -0.73 -23.19 5.39 -482.29 -2.60 -25.79 16 8 C 0.14 4.69 6.15 85.63 0.53 5.22 16 9 C 0.45 19.59 7.85 87.66 0.69 20.27 16 10 O -0.61 -31.56 15.24 -3.05 -0.05 -31.61 16 11 N -0.58 -26.72 5.09 -306.99 -1.56 -28.28 16 12 C -0.33 -18.80 10.16 84.04 0.85 -17.95 16 13 H 0.06 4.30 7.39 -2.91 -0.02 4.28 16 14 C -0.01 -0.36 5.50 84.93 0.47 0.10 16 15 N -0.93 -54.33 13.96 21.66 0.30 -54.03 16 16 Si 0.96 38.26 27.74 68.60 1.90 40.16 16 17 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 18 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 19 H -0.23 -8.07 6.52 99.48 0.65 -7.43 16 20 C 0.16 3.05 3.52 45.89 0.16 3.21 16 21 H 0.13 1.64 7.86 -2.39 -0.02 1.62 16 22 C -0.12 -2.44 6.01 31.49 0.19 -2.25 16 23 C 0.04 0.86 6.06 86.45 0.52 1.39 16 24 N -0.51 -10.80 5.66 -907.64 -5.14 -15.94 16 25 C 0.02 0.33 9.53 127.69 1.22 1.54 16 26 C 0.02 0.47 5.76 86.45 0.50 0.97 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.11 1.29 7.96 -2.39 -0.02 1.27 16 33 H 0.07 1.37 6.36 -2.39 -0.02 1.36 16 34 H 0.41 13.20 5.17 -92.71 -0.48 12.72 16 35 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.39 15.29 5.76 -92.71 -0.53 14.75 16 38 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.05 1.33 7.21 -2.39 -0.02 1.31 16 41 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.03 0.83 7.05 -2.39 -0.02 0.82 16 43 H 0.01 0.31 7.98 -2.39 -0.02 0.29 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.04 1.10 5.71 -2.39 -0.01 1.08 16 47 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -72.15 371.98 -1.52 -73.66 By element: Atomic # 1 Polarization: 45.23 SS G_CDS: -0.10 Total: 45.13 kcal Atomic # 6 Polarization: 25.35 SS G_CDS: 7.76 Total: 33.11 kcal Atomic # 7 Polarization: -128.60 SS G_CDS: -10.99 Total: -139.59 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -0.09 Total: -52.48 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 1.90 Total: 40.16 kcal Total: -72.15 -1.52 -73.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592023221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.176 kcal (2) G-P(sol) polarization free energy of solvation -72.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds