Wall clock time and date at job start Fri Apr 10 2020 18:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00276 * 2 1 4 4 C 1.53004 * 109.47369 * 270.00171 * 3 2 1 5 5 N 1.46898 * 109.46850 * 180.02562 * 4 3 2 6 6 C 1.46845 * 111.00565 * 45.79157 * 5 4 3 7 7 C 1.53034 * 109.52676 * 185.84030 * 6 5 4 8 8 C 1.53126 * 109.27454 * 300.81918 * 7 6 5 9 9 C 1.53119 * 109.16048 * 57.65518 * 8 7 6 10 10 C 1.46850 * 110.99813 * 170.00223 * 5 4 3 11 11 C 1.34783 * 119.99966 * 180.02562 * 2 1 3 12 12 O 1.21585 * 120.00235 * 180.02562 * 11 2 1 13 13 N 1.34779 * 119.99787 * 359.97438 * 11 2 1 14 14 C 1.46498 * 119.99924 * 179.97438 * 13 11 2 15 15 C 1.50703 * 109.47133 * 180.02562 * 14 13 11 16 16 O 1.21286 * 119.99941 * 0.02562 * 15 14 13 17 17 N 1.34772 * 119.99841 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00161 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99275 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00300 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99994 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99941 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46943 * 60.00311 * 22 20 18 24 24 H 1.48498 * 109.47204 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47501 * 300.00347 * 22 20 18 26 26 H 1.09002 * 109.46768 * 89.99383 * 1 2 3 27 27 H 1.09001 * 109.47143 * 209.99784 * 1 2 3 28 28 H 1.08997 * 109.46660 * 329.99840 * 1 2 3 29 29 H 1.09006 * 109.47054 * 150.00122 * 3 2 1 30 30 H 1.08999 * 109.46804 * 30.00530 * 3 2 1 31 31 H 1.08995 * 109.46637 * 59.99753 * 4 3 2 32 32 H 1.09001 * 109.46762 * 299.99710 * 4 3 2 33 33 H 1.08995 * 109.46315 * 65.81881 * 6 5 4 34 34 H 1.09005 * 109.45975 * 305.85394 * 6 5 4 35 35 H 1.08997 * 109.50792 * 180.88024 * 7 6 5 36 36 H 1.09006 * 109.50471 * 60.75677 * 7 6 5 37 37 H 1.08999 * 109.52028 * 177.55723 * 8 7 6 38 38 H 1.08993 * 109.52259 * 297.74866 * 8 7 6 39 39 H 1.09004 * 109.50440 * 62.28501 * 9 8 7 40 40 H 1.09003 * 109.50154 * 182.40625 * 9 8 7 41 41 H 1.09005 * 109.46186 * 54.13967 * 10 5 4 42 42 H 1.08998 * 109.46012 * 294.17361 * 10 5 4 43 43 H 0.97002 * 120.00034 * 0.02562 * 13 11 2 44 44 H 1.08993 * 109.47407 * 300.00827 * 14 13 11 45 45 H 1.09004 * 109.46597 * 60.00577 * 14 13 11 46 46 H 0.97009 * 120.00093 * 0.02562 * 17 15 14 47 47 H 0.96996 * 120.00300 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 7 3.1877 2.9822 -1.4424 6 6 4.3019 2.9461 -0.4866 7 6 4.9525 4.3290 -0.4069 8 6 5.4591 4.7300 -1.7952 9 6 4.2882 4.7130 -2.7818 10 6 3.6569 3.3190 -2.7925 11 6 2.1389 -1.1673 -0.0005 12 8 3.3548 -1.1673 -0.0001 13 7 1.4650 -2.3344 -0.0005 14 6 2.1974 -3.6032 -0.0017 15 6 1.2181 -4.7486 -0.0020 16 8 0.0256 -4.5269 -0.0019 17 7 1.6673 -6.0193 -0.0026 18 6 0.7764 -7.0613 -0.0034 19 1 -0.2853 -6.8639 -0.0041 20 6 1.2396 -8.3714 -0.0034 21 7 2.5315 -8.6115 -0.0020 22 14 0.0257 -9.7911 -0.0039 23 1 -0.8277 -9.7123 -1.2167 24 1 0.7681 -11.0772 -0.0044 25 1 -0.8285 -9.7126 1.2082 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3632 0.8900 0.5139 29 1 3.1500 1.1383 0.5138 30 1 1.6085 2.0283 0.5139 31 1 1.5002 1.8408 -1.9562 32 1 3.0417 0.9507 -1.9563 33 1 5.0404 2.2158 -0.8172 34 1 3.9274 2.6637 0.4973 35 1 5.7893 4.2979 0.2908 36 1 4.2181 5.0574 -0.0631 37 1 5.8845 5.7326 -1.7521 38 1 6.2217 4.0235 -2.1228 39 1 3.5434 5.4474 -2.4753 40 1 4.6505 4.9561 -3.7807 41 1 2.8139 3.3074 -3.4834 42 1 4.3984 2.5869 -3.1123 43 1 0.4949 -2.3344 -0.0005 44 1 2.8235 -3.6605 -0.8920 45 1 2.8247 -3.6613 0.8879 46 1 2.6211 -6.1965 -0.0023 47 1 2.8549 -9.5260 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593410566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:19 Heat of formation + Delta-G solvation = -61.718062 kcal Electronic energy + Delta-G solvation = -25923.781266 eV Core-core repulsion = 22141.510700 eV Total energy + Delta-G solvation = -3782.270566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.21696 -39.18463 -38.22180 -35.84058 -34.53243 -33.97112 -33.44820 -31.38452 -31.18611 -29.29387 -27.54977 -26.42831 -24.89662 -24.11201 -23.25428 -21.75300 -19.96542 -19.71863 -19.53371 -18.30251 -17.79625 -16.80821 -16.02333 -15.64679 -15.56717 -15.21025 -14.90329 -14.71220 -14.59424 -14.35377 -14.26013 -13.82538 -13.67767 -13.53426 -13.20779 -13.15681 -12.95903 -12.54332 -12.36726 -12.11567 -12.04083 -11.83955 -11.63145 -11.47300 -11.24305 -11.10716 -10.93202 -10.63836 -10.54010 -10.51098 -10.31760 -9.99144 -9.62930 -8.94104 -8.62994 -8.53666 -8.48690 -8.10270 -6.51432 -3.93585 2.66453 3.13442 3.21290 3.25050 3.34275 3.70652 3.75019 4.04597 4.19820 4.52639 4.56517 4.65665 4.83651 4.87827 4.91692 5.04142 5.04631 5.17122 5.19437 5.22231 5.36700 5.37764 5.39058 5.45191 5.60022 5.62999 5.64413 5.68025 5.71102 5.83596 5.86571 5.89775 5.92283 6.00534 6.07880 6.09740 6.42228 6.75043 6.84561 6.87170 7.00977 7.45627 7.92015 8.14383 8.45007 8.76178 9.04314 9.39282 9.87168 10.65386 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.032668 B = 0.002102 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.903812 B =13314.848285 C =13669.089266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.635 5.635 3 C 0.133 3.867 4 C 0.039 3.961 5 N -0.534 5.534 6 C 0.045 3.955 7 C -0.116 4.116 8 C -0.123 4.123 9 C -0.115 4.115 10 C 0.055 3.945 11 C 0.706 3.294 12 O -0.596 6.596 13 N -0.723 5.723 14 C 0.127 3.873 15 C 0.429 3.571 16 O -0.599 6.599 17 N -0.549 5.549 18 C -0.305 4.305 19 H 0.105 0.895 20 C 0.025 3.975 21 N -0.895 5.895 22 Si 0.934 3.066 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.272 1.272 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.033 0.967 43 H 0.407 0.593 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.396 0.604 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.584 24.371 -2.293 24.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.373 5.373 3 C 0.009 3.991 4 C -0.090 4.090 5 N -0.260 5.260 6 C -0.082 4.082 7 C -0.154 4.154 8 C -0.161 4.161 9 C -0.153 4.153 10 C -0.073 4.073 11 C 0.407 3.593 12 O -0.475 6.475 13 N -0.382 5.382 14 C -0.001 4.001 15 C 0.214 3.786 16 O -0.485 6.485 17 N -0.184 5.184 18 C -0.435 4.435 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.535 5.535 22 Si 0.761 3.239 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.198 1.198 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.247 0.753 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.230 0.770 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.457 24.628 -2.136 24.842 hybrid contribution 0.083 -1.598 -0.368 1.642 sum 2.540 23.030 -2.504 23.304 Atomic orbital electron populations 1.21776 0.79527 1.03265 1.01959 1.46922 1.06485 1.04761 1.79105 1.21433 0.97984 0.83565 0.96099 1.22510 0.98701 0.89700 0.98099 1.62016 1.25272 1.31396 1.07284 1.22242 0.92192 0.96845 0.96956 1.21593 0.99956 0.96931 0.96941 1.21592 0.97684 1.01278 0.95504 1.21573 0.97738 0.96893 0.99118 1.22081 0.98751 0.96484 0.89981 1.15807 0.85198 0.80359 0.77983 1.90890 1.11536 1.86406 1.58655 1.44945 1.11049 1.03652 1.78572 1.20791 0.94021 0.82209 1.03105 1.19751 0.89128 0.84157 0.85527 1.90481 1.16522 1.84114 1.57424 1.41784 1.10009 1.03928 1.62629 1.19677 0.91393 0.84037 1.48378 0.87731 1.25330 0.96705 0.98916 0.96798 1.69605 1.12553 1.22086 1.49228 0.85863 0.79605 0.79298 0.79139 1.19791 1.20861 1.19779 0.92636 0.90892 0.90802 0.89484 0.89912 0.90614 0.94094 0.94493 0.90066 0.91584 0.91155 0.91921 0.92294 0.91118 0.91684 0.90852 0.94832 0.75329 0.90082 0.90025 0.77007 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.25 59.85 0.61 1.38 16 2 N -0.63 -8.15 2.87 -187.35 -0.54 -8.69 16 3 C 0.13 1.47 4.70 -4.04 -0.02 1.45 16 4 C 0.04 0.42 5.60 -3.82 -0.02 0.40 16 5 N -0.53 -5.23 4.81 -234.67 -1.13 -6.36 16 6 C 0.05 0.43 4.85 -3.84 -0.02 0.41 16 7 C -0.12 -0.90 6.09 -26.65 -0.16 -1.06 16 8 C -0.12 -0.89 6.00 -26.60 -0.16 -1.05 16 9 C -0.12 -0.85 6.09 -26.65 -0.16 -1.01 16 10 C 0.06 0.49 5.42 -3.83 -0.02 0.47 16 11 C 0.71 11.88 8.28 -86.91 -0.72 11.16 16 12 O -0.60 -11.79 15.92 5.29 0.08 -11.70 16 13 N -0.72 -12.58 5.39 -66.41 -0.36 -12.94 16 14 C 0.13 2.41 6.15 -5.19 -0.03 2.38 16 15 C 0.43 9.91 7.85 -10.99 -0.09 9.82 16 16 O -0.60 -15.32 15.24 5.55 0.08 -15.24 16 17 N -0.55 -13.68 5.29 -10.96 -0.06 -13.73 16 18 C -0.31 -8.31 9.68 -14.93 -0.14 -8.45 16 19 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 21 N -0.89 -23.93 13.05 55.50 0.72 -23.20 16 22 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 28 H 0.07 0.55 7.89 -51.93 -0.41 0.14 16 29 H 0.09 1.09 5.48 -51.93 -0.28 0.81 16 30 H 0.08 0.75 7.89 -51.93 -0.41 0.34 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.04 0.55 8.08 -51.93 -0.42 0.13 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.76 5.81 -51.93 -0.30 0.46 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.62 8.12 -51.93 -0.42 0.19 16 42 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.41 6.89 5.17 -40.82 -0.21 6.68 16 44 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.40 9.51 7.90 -40.82 -0.32 9.18 16 47 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -31.45 375.80 -9.27 -40.73 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -7.70 Total: 13.48 kcal Atomic # 6 Polarization: 17.51 SS G_CDS: -1.03 Total: 16.48 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: -1.36 Total: -64.93 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: 0.17 Total: -26.94 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.45 -9.27 -40.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593410566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.991 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds