Wall clock time and date at job start Fri Apr 10 2020 18:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00276 * 2 1 4 4 C 1.53004 * 109.47369 * 270.00171 * 3 2 1 5 5 N 1.46898 * 109.46850 * 180.02562 * 4 3 2 6 6 C 1.46845 * 111.00565 * 45.79157 * 5 4 3 7 7 C 1.53034 * 109.52676 * 185.84030 * 6 5 4 8 8 C 1.53126 * 109.27454 * 300.81918 * 7 6 5 9 9 C 1.53119 * 109.16048 * 57.65518 * 8 7 6 10 10 C 1.46850 * 110.99813 * 170.00223 * 5 4 3 11 11 C 1.34783 * 119.99966 * 180.02562 * 2 1 3 12 12 O 1.21585 * 120.00235 * 180.02562 * 11 2 1 13 13 N 1.34779 * 119.99787 * 359.97438 * 11 2 1 14 14 C 1.46498 * 119.99924 * 179.97438 * 13 11 2 15 15 C 1.50703 * 109.47133 * 180.02562 * 14 13 11 16 16 O 1.21286 * 119.99941 * 0.02562 * 15 14 13 17 17 N 1.34772 * 119.99841 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00161 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99275 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00300 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99994 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99941 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46943 * 60.00311 * 22 20 18 24 24 H 1.48498 * 109.47204 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47501 * 300.00347 * 22 20 18 26 26 H 1.09002 * 109.46768 * 89.99383 * 1 2 3 27 27 H 1.09001 * 109.47143 * 209.99784 * 1 2 3 28 28 H 1.08997 * 109.46660 * 329.99840 * 1 2 3 29 29 H 1.09006 * 109.47054 * 150.00122 * 3 2 1 30 30 H 1.08999 * 109.46804 * 30.00530 * 3 2 1 31 31 H 1.08995 * 109.46637 * 59.99753 * 4 3 2 32 32 H 1.09001 * 109.46762 * 299.99710 * 4 3 2 33 33 H 1.08995 * 109.46315 * 65.81881 * 6 5 4 34 34 H 1.09005 * 109.45975 * 305.85394 * 6 5 4 35 35 H 1.08997 * 109.50792 * 180.88024 * 7 6 5 36 36 H 1.09006 * 109.50471 * 60.75677 * 7 6 5 37 37 H 1.08999 * 109.52028 * 177.55723 * 8 7 6 38 38 H 1.08993 * 109.52259 * 297.74866 * 8 7 6 39 39 H 1.09004 * 109.50440 * 62.28501 * 9 8 7 40 40 H 1.09003 * 109.50154 * 182.40625 * 9 8 7 41 41 H 1.09005 * 109.46186 * 54.13967 * 10 5 4 42 42 H 1.08998 * 109.46012 * 294.17361 * 10 5 4 43 43 H 0.97002 * 120.00034 * 0.02562 * 13 11 2 44 44 H 1.08993 * 109.47407 * 300.00827 * 14 13 11 45 45 H 1.09004 * 109.46597 * 60.00577 * 14 13 11 46 46 H 0.97009 * 120.00093 * 0.02562 * 17 15 14 47 47 H 0.96996 * 120.00300 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 7 3.1877 2.9822 -1.4424 6 6 4.3019 2.9461 -0.4866 7 6 4.9525 4.3290 -0.4069 8 6 5.4591 4.7300 -1.7952 9 6 4.2882 4.7130 -2.7818 10 6 3.6569 3.3190 -2.7925 11 6 2.1389 -1.1673 -0.0005 12 8 3.3548 -1.1673 -0.0001 13 7 1.4650 -2.3344 -0.0005 14 6 2.1974 -3.6032 -0.0017 15 6 1.2181 -4.7486 -0.0020 16 8 0.0256 -4.5269 -0.0019 17 7 1.6673 -6.0193 -0.0026 18 6 0.7764 -7.0613 -0.0034 19 1 -0.2853 -6.8639 -0.0041 20 6 1.2396 -8.3714 -0.0034 21 7 2.5315 -8.6115 -0.0020 22 14 0.0257 -9.7911 -0.0039 23 1 -0.8277 -9.7123 -1.2167 24 1 0.7681 -11.0772 -0.0044 25 1 -0.8285 -9.7126 1.2082 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3632 0.8900 0.5139 29 1 3.1500 1.1383 0.5138 30 1 1.6085 2.0283 0.5139 31 1 1.5002 1.8408 -1.9562 32 1 3.0417 0.9507 -1.9563 33 1 5.0404 2.2158 -0.8172 34 1 3.9274 2.6637 0.4973 35 1 5.7893 4.2979 0.2908 36 1 4.2181 5.0574 -0.0631 37 1 5.8845 5.7326 -1.7521 38 1 6.2217 4.0235 -2.1228 39 1 3.5434 5.4474 -2.4753 40 1 4.6505 4.9561 -3.7807 41 1 2.8139 3.3074 -3.4834 42 1 4.3984 2.5869 -3.1123 43 1 0.4949 -2.3344 -0.0005 44 1 2.8235 -3.6605 -0.8920 45 1 2.8247 -3.6613 0.8879 46 1 2.6211 -6.1965 -0.0023 47 1 2.8549 -9.5260 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593410566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:18 Heat of formation + Delta-G solvation = -84.355734 kcal Electronic energy + Delta-G solvation = -25924.762909 eV Core-core repulsion = 22141.510700 eV Total energy + Delta-G solvation = -3783.252209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.48205 -40.24395 -39.81439 -36.93664 -36.27226 -35.46653 -34.47293 -33.37729 -31.88429 -30.31304 -28.95675 -27.47085 -26.42981 -25.27687 -23.95825 -22.67391 -21.39969 -20.96679 -20.61125 -20.10228 -19.23030 -17.83940 -17.41849 -17.16804 -16.80325 -16.53538 -16.10261 -15.93593 -15.81700 -15.68780 -15.30214 -15.10547 -14.88708 -14.53940 -14.20523 -14.10834 -13.99030 -13.72674 -13.54052 -13.53825 -13.26229 -13.08304 -12.90387 -12.77239 -12.47506 -12.16403 -12.13848 -12.04186 -11.58063 -11.56858 -11.39581 -11.26502 -11.22766 -10.57264 -10.33266 -10.10655 -9.60214 -9.38061 -8.51352 -6.01863 1.37800 1.41545 1.48314 1.55407 1.88107 2.04180 2.27428 2.74201 3.03259 3.15631 3.17593 3.82028 3.88798 3.94395 4.07970 4.08807 4.19501 4.24426 4.33510 4.39615 4.42501 4.46635 4.47852 4.57551 4.62514 4.64338 4.74122 4.87309 4.87855 4.90903 4.95282 5.06441 5.08497 5.23632 5.26962 5.28545 5.37870 5.44807 5.49340 5.81961 5.91178 6.03680 6.08338 6.46800 6.85823 7.02371 7.39370 7.47137 7.92833 8.65317 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.032668 B = 0.002102 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.903812 B =13314.848285 C =13669.089266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.627 5.627 3 C 0.134 3.866 4 C 0.047 3.953 5 N -0.529 5.529 6 C 0.044 3.956 7 C -0.113 4.113 8 C -0.124 4.124 9 C -0.111 4.111 10 C 0.051 3.949 11 C 0.702 3.298 12 O -0.630 6.630 13 N -0.724 5.724 14 C 0.141 3.859 15 C 0.434 3.566 16 O -0.623 6.623 17 N -0.559 5.559 18 C -0.338 4.338 19 H 0.088 0.912 20 C -0.012 4.012 21 N -0.916 5.916 22 Si 0.999 3.001 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.269 1.269 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.008 0.992 33 H 0.013 0.987 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.018 0.982 43 H 0.410 0.590 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.399 0.601 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 25.808 -2.230 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.364 5.364 3 C 0.011 3.989 4 C -0.082 4.082 5 N -0.254 5.254 6 C -0.084 4.084 7 C -0.150 4.150 8 C -0.161 4.161 9 C -0.148 4.148 10 C -0.077 4.077 11 C 0.403 3.597 12 O -0.512 6.512 13 N -0.383 5.383 14 C 0.012 3.988 15 C 0.221 3.779 16 O -0.511 6.511 17 N -0.194 5.194 18 C -0.467 4.467 19 H 0.106 0.894 20 C -0.213 4.213 21 N -0.556 5.556 22 Si 0.822 3.178 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.194 1.194 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.125 0.875 29 H 0.088 0.912 30 H 0.131 0.869 31 H 0.105 0.895 32 H 0.026 0.974 33 H 0.032 0.968 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.036 0.964 43 H 0.250 0.750 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.233 0.767 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.650 26.112 -2.075 26.246 hybrid contribution 0.331 -1.956 -0.397 2.023 sum 1.980 24.156 -2.472 24.363 Atomic orbital electron populations 1.22006 0.77347 1.04500 1.03041 1.47011 1.07842 1.03928 1.77596 1.21552 0.97689 0.83285 0.96342 1.22409 0.98769 0.89366 0.97646 1.62108 1.25265 1.30235 1.07814 1.22282 0.91714 0.97575 0.96814 1.21584 1.00241 0.95656 0.97552 1.21613 0.97503 1.01909 0.95119 1.21561 0.97719 0.95640 0.99925 1.22175 0.98731 0.97202 0.89579 1.15962 0.84862 0.81067 0.77845 1.90866 1.13108 1.86995 1.60224 1.44870 1.11059 1.03368 1.79036 1.20582 0.92951 0.81395 1.03884 1.20357 0.89400 0.84531 0.83617 1.90457 1.17979 1.84637 1.58049 1.41835 1.09897 1.04295 1.63379 1.19713 0.91098 0.85376 1.50487 0.89444 1.26160 0.98509 1.00822 0.95764 1.69676 1.13834 1.22931 1.49173 0.84905 0.77492 0.76319 0.79132 1.19456 1.19676 1.19416 0.91616 0.91691 0.87539 0.91205 0.86871 0.89469 0.97378 0.96817 0.89932 0.90800 0.90498 0.90346 0.93161 0.90637 0.90458 0.90223 0.96417 0.74975 0.89327 0.89126 0.76723 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.28 10.25 127.77 1.31 2.59 16 2 N -0.63 -15.38 2.87 -864.90 -2.49 -17.86 16 3 C 0.13 2.81 4.70 86.38 0.41 3.22 16 4 C 0.05 1.00 5.60 86.30 0.48 1.48 16 5 N -0.53 -9.90 4.81 -896.37 -4.31 -14.21 16 6 C 0.04 0.82 4.85 86.33 0.42 1.24 16 7 C -0.11 -1.59 6.09 30.65 0.19 -1.40 16 8 C -0.12 -1.62 6.00 30.68 0.18 -1.44 16 9 C -0.11 -1.45 6.09 30.65 0.19 -1.26 16 10 C 0.05 0.88 5.42 86.32 0.47 1.35 16 11 C 0.70 23.48 8.28 179.05 1.48 24.96 16 12 O -0.63 -25.26 15.92 -3.98 -0.06 -25.32 16 13 N -0.72 -25.03 5.39 -482.29 -2.60 -27.63 16 14 C 0.14 5.35 6.15 85.63 0.53 5.87 16 15 C 0.43 20.27 7.85 87.66 0.69 20.96 16 16 O -0.62 -32.21 15.24 -3.05 -0.05 -32.26 16 17 N -0.56 -28.30 5.29 -306.99 -1.62 -29.92 16 18 C -0.34 -18.62 9.68 84.04 0.81 -17.80 16 19 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 20 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 21 N -0.92 -48.89 13.05 21.66 0.28 -48.61 16 22 Si 1.00 41.72 29.55 68.60 2.03 43.75 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.27 6.36 -2.39 -0.02 1.26 16 28 H 0.11 1.20 7.89 -2.39 -0.02 1.18 16 29 H 0.07 1.74 5.48 -2.38 -0.01 1.73 16 30 H 0.11 1.71 7.89 -2.39 -0.02 1.70 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.01 0.22 8.08 -2.39 -0.02 0.20 16 33 H 0.01 0.31 8.14 -2.39 -0.02 0.30 16 34 H 0.08 1.50 5.81 -2.38 -0.01 1.49 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 1.25 8.12 -2.38 -0.02 1.23 16 42 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.41 13.74 5.17 -92.71 -0.48 13.26 16 44 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 45 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 46 H 0.40 19.47 7.90 -92.70 -0.73 18.74 16 47 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -67.81 375.80 -1.43 -69.24 By element: Atomic # 1 Polarization: 43.44 SS G_CDS: -0.23 Total: 43.21 kcal Atomic # 6 Polarization: 32.00 SS G_CDS: 7.62 Total: 39.62 kcal Atomic # 7 Polarization: -127.50 SS G_CDS: -10.73 Total: -138.24 kcal Atomic # 8 Polarization: -57.47 SS G_CDS: -0.11 Total: -57.58 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -67.81 -1.43 -69.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593410566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.117 kcal (2) G-P(sol) polarization free energy of solvation -67.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds