Wall clock time and date at job start Fri Apr 10 2020 18:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99806 * 2 1 4 4 O 1.20823 * 120.00313 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00214 * 179.97438 * 3 2 1 6 6 H 1.09002 * 110.05225 * 301.41904 * 5 3 2 7 7 C 1.53870 * 110.02810 * 62.83400 * 5 3 2 8 8 C 1.54266 * 106.59792 * 119.28627 * 7 5 3 9 9 C 1.54895 * 104.19385 * 23.61085 * 8 7 5 10 10 H 1.08991 * 110.91637 * 80.44677 * 9 8 7 11 11 N 1.46506 * 110.75469 * 203.74483 * 9 8 7 12 12 C 1.34779 * 119.99461 * 268.32499 * 11 9 8 13 13 O 1.21275 * 120.00183 * 0.02562 * 12 11 9 14 14 C 1.50706 * 119.99413 * 180.02562 * 12 11 9 15 15 H 1.08994 * 109.47395 * 40.00361 * 14 12 11 16 16 N 1.46902 * 109.46874 * 159.99914 * 14 12 11 17 17 C 1.52996 * 109.46971 * 279.99820 * 14 12 11 18 18 C 1.52997 * 109.47210 * 175.00169 * 17 14 12 19 19 C 1.52999 * 109.47561 * 179.97438 * 18 17 14 20 20 C 1.50697 * 109.47389 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99789 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00143 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00030 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00042 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47006 * 89.99982 * 24 22 20 26 26 H 1.48504 * 109.46837 * 209.99774 * 24 22 20 27 27 H 1.48492 * 109.47053 * 329.99688 * 24 22 20 28 28 C 1.54267 * 110.03454 * 180.02562 * 5 3 2 29 29 H 1.08997 * 109.46962 * 299.99899 * 1 2 3 30 30 H 1.09001 * 109.47136 * 59.99812 * 1 2 3 31 31 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 32 32 H 1.09000 * 110.03460 * 238.57256 * 7 5 3 33 33 H 1.09000 * 110.03923 * 0.02562 * 7 5 3 34 34 H 1.08999 * 110.49355 * 264.93192 * 8 7 5 35 35 H 1.08997 * 110.48658 * 142.28583 * 8 7 5 36 36 H 0.96995 * 119.99814 * 88.32447 * 11 9 8 37 37 H 1.00909 * 110.99807 * 59.99848 * 16 14 12 38 38 H 1.00899 * 111.00100 * 183.95074 * 16 14 12 39 39 H 1.08998 * 109.47540 * 295.00457 * 17 14 12 40 40 H 1.09002 * 109.47120 * 55.00467 * 17 14 12 41 41 H 1.08998 * 109.47104 * 300.00556 * 18 17 14 42 42 H 1.09006 * 109.47314 * 60.00151 * 18 17 14 43 43 H 1.08996 * 109.46926 * 300.00192 * 19 18 17 44 44 H 1.09002 * 109.46913 * 60.00209 * 19 18 17 45 45 H 0.97007 * 120.00318 * 180.02562 * 23 22 20 46 46 H 1.08997 * 110.48405 * 98.42724 * 28 5 3 47 47 H 1.08999 * 110.59643 * 335.84462 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2750 0.0006 6 1 3.9672 0.7617 0.8747 7 6 4.1277 0.6432 -1.2852 8 6 4.9011 1.7563 -2.0219 9 6 5.2748 2.7623 -0.9048 10 1 6.1516 2.4232 -0.3533 11 7 5.4994 4.0981 -1.4630 12 6 6.7387 4.4716 -1.8387 13 8 7.6677 3.7019 -1.7151 14 6 6.9699 5.8459 -2.4123 15 1 6.3731 6.5740 -1.8632 16 7 8.3929 6.1919 -2.2962 17 6 6.5606 5.8587 -3.8865 18 6 6.6772 7.2819 -4.4359 19 6 6.2684 7.2946 -5.9102 20 6 6.3827 8.6965 -6.4511 21 1 6.7141 9.4982 -5.8077 22 6 6.0641 8.9557 -7.7672 23 7 5.6600 7.9796 -8.5505 24 14 6.2064 10.6934 -8.4379 25 1 7.5705 10.9021 -8.9863 26 1 5.2040 10.8916 -9.5155 27 1 5.9576 11.6676 -7.3452 28 6 4.0182 2.7500 0.0011 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.8011 -0.1767 -1.0353 33 1 3.3117 0.2799 -1.9099 34 1 4.2653 2.2334 -2.7677 35 1 5.7999 1.3523 -2.4876 36 1 4.7563 4.7135 -1.5622 37 1 8.9678 5.5311 -2.7974 38 1 8.5632 7.1340 -2.6150 39 1 7.2164 5.1963 -4.4515 40 1 5.5300 5.5163 -3.9804 41 1 6.0214 7.9443 -3.8708 42 1 7.7078 7.6243 -4.3420 43 1 6.9246 6.6323 -6.4748 44 1 5.2379 6.9521 -6.0045 45 1 5.4362 8.1619 -9.4766 46 1 4.2726 3.0706 1.0113 47 1 3.2405 3.3894 -0.4165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594437155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:23 Heat of formation + Delta-G solvation = -154.218219 kcal Electronic energy + Delta-G solvation = -25735.086717 eV Core-core repulsion = 21916.512292 eV Total energy + Delta-G solvation = -3818.574424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.12896 -39.95885 -38.12956 -36.73125 -35.92451 -33.92534 -33.35153 -31.24121 -29.80203 -29.03213 -27.97741 -27.30713 -25.17766 -22.98493 -22.50302 -20.95679 -20.58525 -20.21242 -19.86694 -18.01296 -17.47575 -17.21333 -16.87142 -16.32778 -15.96796 -15.76001 -14.89647 -14.75167 -14.67995 -14.47719 -14.07053 -13.94288 -13.58834 -13.50634 -13.27526 -12.79565 -12.50563 -12.45041 -12.15082 -11.99761 -11.90080 -11.78505 -11.66397 -11.29098 -11.22092 -11.20305 -11.08578 -10.82387 -10.72873 -10.61956 -10.57408 -9.82288 -9.75577 -9.38802 -9.14453 -9.11642 -8.47631 -8.38256 -6.03619 -4.06574 1.81127 2.26269 2.72404 3.08178 3.29511 3.35942 3.38987 3.99100 4.09310 4.39289 4.42681 4.65760 4.71055 4.78361 4.81500 4.85795 4.89488 4.99028 5.05377 5.12505 5.13314 5.20780 5.24679 5.32306 5.33968 5.45366 5.64139 5.75454 5.77553 5.86151 5.91858 5.97594 6.01066 6.25753 6.42802 6.57124 6.73334 7.01705 7.17162 7.34339 7.51008 7.60971 7.62166 7.74811 7.95492 8.28385 8.37476 9.00593 9.57980 11.07588 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015294 B = 0.002356 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.358494 B =11883.753058 C =13100.269878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.503 6.503 5 C -0.083 4.083 6 H 0.115 0.885 7 C -0.110 4.110 8 C -0.139 4.139 9 C 0.143 3.857 10 H 0.101 0.899 11 N -0.726 5.726 12 C 0.527 3.473 13 O -0.534 6.534 14 C 0.075 3.925 15 H 0.099 0.901 16 N -0.830 5.830 17 C -0.146 4.146 18 C -0.109 4.109 19 C 0.022 3.978 20 C -0.522 4.522 21 H 0.055 0.945 22 C 0.056 3.944 23 N -0.895 5.895 24 Si 0.892 3.108 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 C -0.123 4.123 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.403 0.597 37 H 0.349 0.651 38 H 0.351 0.649 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.014 0.986 44 H 0.015 0.985 45 H 0.261 0.739 46 H 0.082 0.918 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.968 -16.938 19.315 26.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.309 3.691 4 O -0.390 6.390 5 C -0.103 4.103 6 H 0.133 0.867 7 C -0.148 4.148 8 C -0.178 4.178 9 C 0.038 3.962 10 H 0.119 0.881 11 N -0.378 5.378 12 C 0.314 3.686 13 O -0.410 6.410 14 C -0.041 4.041 15 H 0.117 0.883 16 N -0.362 5.362 17 C -0.186 4.186 18 C -0.147 4.147 19 C -0.015 4.015 20 C -0.560 4.560 21 H 0.073 0.927 22 C -0.145 4.145 23 N -0.535 5.535 24 Si 0.720 3.280 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.161 4.161 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.237 0.763 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.033 0.967 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.666 -17.341 20.019 27.312 hybrid contribution -0.768 1.330 -1.610 2.225 sum -7.434 -16.011 18.409 25.505 Atomic orbital electron populations 1.23298 0.76166 1.03798 1.02702 1.86506 1.23545 1.33386 1.84054 1.23718 0.92048 0.81335 0.71999 1.90678 1.67058 1.36321 1.44957 1.21636 0.87118 0.99211 1.02303 0.86679 1.22063 1.00234 0.98504 0.94017 1.22827 1.00772 0.95941 0.98257 1.21867 0.97832 0.82798 0.93706 0.88118 1.45951 1.10329 1.16173 1.65396 1.20739 0.82060 0.89305 0.76533 1.90648 1.42106 1.54274 1.53947 1.21444 0.92418 0.93574 0.96616 0.88298 1.58696 1.03711 1.08307 1.65525 1.22399 1.02116 1.00686 0.93394 1.21653 1.00364 0.92551 1.00096 1.19078 0.96621 0.97028 0.88788 1.21244 1.44752 0.94348 0.95667 0.92679 1.25036 0.95257 0.97048 0.97168 1.69964 1.45475 1.31557 1.06467 0.86593 0.77835 0.84857 0.78721 1.20644 1.21215 1.19860 1.22666 0.97873 0.94176 1.01353 0.91849 0.91740 0.88001 0.89835 0.90734 0.90691 0.90266 0.76254 0.83755 0.83368 0.91782 0.91597 0.93035 0.93339 0.96729 0.96632 0.92975 0.89938 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.95 10.54 -39.25 -0.41 -3.36 16 3 C 0.47 4.28 7.00 36.01 0.25 4.53 16 4 O -0.50 -6.04 15.16 -18.75 -0.28 -6.32 16 5 C -0.08 -0.59 3.41 -90.65 -0.31 -0.90 16 6 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 7 C -0.11 -0.77 6.43 -25.62 -0.16 -0.93 16 8 C -0.14 -1.26 6.51 -25.07 -0.16 -1.42 16 9 C 0.14 1.35 3.27 -65.92 -0.22 1.13 16 10 H 0.10 1.05 7.55 -51.93 -0.39 0.66 16 11 N -0.73 -7.80 5.18 -51.86 -0.27 -8.07 16 12 C 0.53 7.34 7.08 -10.98 -0.08 7.26 16 13 O -0.53 -9.10 15.89 5.56 0.09 -9.01 16 14 C 0.07 1.02 3.21 -68.86 -0.22 0.80 16 15 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 16 N -0.83 -11.62 8.94 -5.65 -0.05 -11.67 16 17 C -0.15 -2.31 4.84 -26.73 -0.13 -2.44 16 18 C -0.11 -2.08 4.92 -26.73 -0.13 -2.21 16 19 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 20 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 21 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 22 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 23 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 24 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 28 C -0.12 -0.96 5.78 -25.06 -0.14 -1.11 16 29 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 30 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.54 7.66 -51.93 -0.40 0.14 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.40 3.65 8.57 -40.82 -0.35 3.30 16 37 H 0.35 5.05 8.58 -39.29 -0.34 4.72 16 38 H 0.35 4.63 7.55 -39.29 -0.30 4.34 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.89 6.87 -51.93 -0.36 0.54 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.09 0.86 6.76 -51.93 -0.35 0.51 16 LS Contribution 385.94 15.07 5.82 5.82 Total: -1.00 -34.12 385.94 -8.12 -42.25 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.94 Total: 6.94 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -0.79 Total: -6.97 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.42 Total: -45.85 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.61 Total: -18.69 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.12 -8.12 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594437155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.969 kcal (2) G-P(sol) polarization free energy of solvation -34.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds