Wall clock time and date at job start Fri Apr 10 2020 18:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99806 * 2 1 4 4 O 1.20823 * 120.00313 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00214 * 179.97438 * 3 2 1 6 6 H 1.09002 * 110.05225 * 301.41904 * 5 3 2 7 7 C 1.53870 * 110.02810 * 62.83400 * 5 3 2 8 8 C 1.54266 * 106.59792 * 119.28627 * 7 5 3 9 9 C 1.54895 * 104.19385 * 23.61085 * 8 7 5 10 10 H 1.08991 * 110.91637 * 80.44677 * 9 8 7 11 11 N 1.46506 * 110.75469 * 203.74483 * 9 8 7 12 12 C 1.34779 * 119.99461 * 268.32499 * 11 9 8 13 13 O 1.21275 * 120.00183 * 0.02562 * 12 11 9 14 14 C 1.50706 * 119.99413 * 180.02562 * 12 11 9 15 15 H 1.08994 * 109.47395 * 40.00361 * 14 12 11 16 16 N 1.46902 * 109.46874 * 159.99914 * 14 12 11 17 17 C 1.52996 * 109.46971 * 279.99820 * 14 12 11 18 18 C 1.52997 * 109.47210 * 175.00169 * 17 14 12 19 19 C 1.52999 * 109.47561 * 179.97438 * 18 17 14 20 20 C 1.50697 * 109.47389 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99789 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00143 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00030 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00042 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47006 * 89.99982 * 24 22 20 26 26 H 1.48504 * 109.46837 * 209.99774 * 24 22 20 27 27 H 1.48492 * 109.47053 * 329.99688 * 24 22 20 28 28 C 1.54267 * 110.03454 * 180.02562 * 5 3 2 29 29 H 1.08997 * 109.46962 * 299.99899 * 1 2 3 30 30 H 1.09001 * 109.47136 * 59.99812 * 1 2 3 31 31 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 32 32 H 1.09000 * 110.03460 * 238.57256 * 7 5 3 33 33 H 1.09000 * 110.03923 * 0.02562 * 7 5 3 34 34 H 1.08999 * 110.49355 * 264.93192 * 8 7 5 35 35 H 1.08997 * 110.48658 * 142.28583 * 8 7 5 36 36 H 0.96995 * 119.99814 * 88.32447 * 11 9 8 37 37 H 1.00909 * 110.99807 * 59.99848 * 16 14 12 38 38 H 1.00899 * 111.00100 * 183.95074 * 16 14 12 39 39 H 1.08998 * 109.47540 * 295.00457 * 17 14 12 40 40 H 1.09002 * 109.47120 * 55.00467 * 17 14 12 41 41 H 1.08998 * 109.47104 * 300.00556 * 18 17 14 42 42 H 1.09006 * 109.47314 * 60.00151 * 18 17 14 43 43 H 1.08996 * 109.46926 * 300.00192 * 19 18 17 44 44 H 1.09002 * 109.46913 * 60.00209 * 19 18 17 45 45 H 0.97007 * 120.00318 * 180.02562 * 23 22 20 46 46 H 1.08997 * 110.48405 * 98.42724 * 28 5 3 47 47 H 1.08999 * 110.59643 * 335.84462 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2750 0.0006 6 1 3.9672 0.7617 0.8747 7 6 4.1277 0.6432 -1.2852 8 6 4.9011 1.7563 -2.0219 9 6 5.2748 2.7623 -0.9048 10 1 6.1516 2.4232 -0.3533 11 7 5.4994 4.0981 -1.4630 12 6 6.7387 4.4716 -1.8387 13 8 7.6677 3.7019 -1.7151 14 6 6.9699 5.8459 -2.4123 15 1 6.3731 6.5740 -1.8632 16 7 8.3929 6.1919 -2.2962 17 6 6.5606 5.8587 -3.8865 18 6 6.6772 7.2819 -4.4359 19 6 6.2684 7.2946 -5.9102 20 6 6.3827 8.6965 -6.4511 21 1 6.7141 9.4982 -5.8077 22 6 6.0641 8.9557 -7.7672 23 7 5.6600 7.9796 -8.5505 24 14 6.2064 10.6934 -8.4379 25 1 7.5705 10.9021 -8.9863 26 1 5.2040 10.8916 -9.5155 27 1 5.9576 11.6676 -7.3452 28 6 4.0182 2.7500 0.0011 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.8011 -0.1767 -1.0353 33 1 3.3117 0.2799 -1.9099 34 1 4.2653 2.2334 -2.7677 35 1 5.7999 1.3523 -2.4876 36 1 4.7563 4.7135 -1.5622 37 1 8.9678 5.5311 -2.7974 38 1 8.5632 7.1340 -2.6150 39 1 7.2164 5.1963 -4.4515 40 1 5.5300 5.5163 -3.9804 41 1 6.0214 7.9443 -3.8708 42 1 7.7078 7.6243 -4.3420 43 1 6.9246 6.6323 -6.4748 44 1 5.2379 6.9521 -6.0045 45 1 5.4362 8.1619 -9.4766 46 1 4.2726 3.0706 1.0113 47 1 3.2405 3.3894 -0.4165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594437155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:22 Heat of formation + Delta-G solvation = -178.008701 kcal Electronic energy + Delta-G solvation = -25736.118349 eV Core-core repulsion = 21916.512292 eV Total energy + Delta-G solvation = -3819.606057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.83422 -40.98193 -38.91770 -37.51078 -37.24650 -35.26288 -34.84662 -32.98663 -30.52027 -29.83381 -29.21390 -28.17909 -26.65501 -24.34165 -23.46166 -21.96887 -21.69233 -21.40866 -20.70484 -18.70075 -18.52555 -18.45365 -17.95609 -17.56840 -16.83529 -16.54246 -16.45555 -16.10874 -15.96147 -15.70854 -15.11099 -14.69461 -14.56831 -14.38456 -14.24788 -14.23063 -13.70101 -13.61353 -13.48713 -13.02533 -12.92074 -12.79585 -12.57105 -12.56096 -12.40748 -12.34834 -12.31743 -11.94678 -11.82444 -11.80121 -11.50291 -11.42976 -11.30291 -11.26352 -10.74504 -10.56827 -10.05875 -9.65766 -8.21128 -6.32365 1.12077 1.39836 1.40748 1.51827 1.60128 1.68138 2.16935 2.40187 3.12334 3.32729 3.43667 3.69977 3.74238 3.86891 3.99801 4.05137 4.10530 4.23224 4.28813 4.31104 4.34839 4.37726 4.43136 4.44622 4.54738 4.58076 4.71081 4.76880 4.84441 5.01637 5.03096 5.09446 5.15848 5.18789 5.20484 5.23501 5.36315 5.51461 5.56119 5.72565 5.84535 6.07021 6.23144 6.49990 6.54849 6.67557 6.85711 7.24805 7.37428 8.90568 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015294 B = 0.002356 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.358494 B =11883.753058 C =13100.269878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.467 3.533 4 O -0.537 6.537 5 C -0.079 4.079 6 H 0.144 0.856 7 C -0.103 4.103 8 C -0.139 4.139 9 C 0.141 3.859 10 H 0.095 0.905 11 N -0.714 5.714 12 C 0.526 3.474 13 O -0.568 6.568 14 C 0.083 3.917 15 H 0.120 0.880 16 N -0.831 5.831 17 C -0.134 4.134 18 C -0.095 4.095 19 C 0.023 3.977 20 C -0.541 4.541 21 H 0.063 0.937 22 C -0.004 4.004 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.261 1.261 28 C -0.115 4.115 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.131 0.869 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.412 0.588 37 H 0.345 0.655 38 H 0.356 0.644 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.056 0.944 43 H -0.015 1.015 44 H -0.009 1.009 45 H 0.263 0.737 46 H 0.095 0.905 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.204 -16.677 20.851 27.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.311 3.689 4 O -0.427 6.427 5 C -0.098 4.098 6 H 0.161 0.839 7 C -0.140 4.140 8 C -0.178 4.178 9 C 0.037 3.963 10 H 0.113 0.887 11 N -0.366 5.366 12 C 0.313 3.687 13 O -0.447 6.447 14 C -0.032 4.032 15 H 0.138 0.862 16 N -0.363 5.363 17 C -0.174 4.174 18 C -0.133 4.133 19 C -0.014 4.014 20 C -0.579 4.579 21 H 0.082 0.918 22 C -0.201 4.201 23 N -0.576 5.576 24 Si 0.789 3.211 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.185 1.185 28 C -0.153 4.153 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.149 0.851 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.249 0.751 37 H 0.159 0.841 38 H 0.171 0.829 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.003 0.997 44 H 0.009 0.991 45 H 0.071 0.929 46 H 0.114 0.886 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.930 -17.086 21.577 28.382 hybrid contribution -0.750 1.185 -2.099 2.524 sum -7.679 -15.901 19.478 26.291 Atomic orbital electron populations 1.23537 0.75021 1.05670 1.02392 1.86503 1.24748 1.32816 1.83610 1.24096 0.92749 0.81088 0.70938 1.90667 1.67927 1.37389 1.46692 1.21704 0.85839 0.98848 1.03406 0.83870 1.22023 1.00203 0.98162 0.93660 1.22783 1.00327 0.96583 0.98107 1.21960 0.98354 0.81993 0.94036 0.88686 1.45906 1.09640 1.16927 1.64140 1.20737 0.82517 0.88993 0.76472 1.90635 1.43332 1.55037 1.55660 1.21394 0.92576 0.94296 0.94970 0.86182 1.58716 1.03724 1.08521 1.65382 1.22216 1.02109 0.98181 0.94850 1.21435 1.00838 0.94891 0.96094 1.19007 0.94547 0.95311 0.92536 1.21729 1.44341 0.95626 0.96192 0.91837 1.26010 0.94850 1.01569 0.97679 1.70102 1.46593 1.34017 1.06872 0.85455 0.77972 0.79513 0.78172 1.19900 1.20943 1.18487 1.22584 0.96453 0.94751 1.01471 0.91874 0.92396 0.85094 0.87911 0.90885 0.91799 0.91458 0.75135 0.84148 0.82851 0.93330 0.91233 0.91868 0.92538 0.99694 0.99088 0.92855 0.88635 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.38 10.54 -51.39 -0.54 -5.92 16 3 C 0.47 8.01 7.00 71.24 0.50 8.50 16 4 O -0.54 -12.62 15.16 21.97 0.33 -12.29 16 5 C -0.08 -0.96 3.41 -10.81 -0.04 -1.00 16 6 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 7 C -0.10 -1.27 6.43 31.32 0.20 -1.07 16 8 C -0.14 -2.45 6.51 31.67 0.21 -2.24 16 9 C 0.14 2.52 3.27 46.29 0.15 2.67 16 10 H 0.10 1.87 7.55 -2.39 -0.02 1.86 16 11 N -0.71 -14.67 5.18 -436.37 -2.26 -16.93 16 12 C 0.53 14.22 7.08 87.66 0.62 14.84 16 13 O -0.57 -19.17 15.89 -3.01 -0.05 -19.22 16 14 C 0.08 2.16 3.21 44.17 0.14 2.30 16 15 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 16 N -0.83 -22.33 8.94 -171.80 -1.54 -23.87 16 17 C -0.13 -4.18 4.84 30.59 0.15 -4.03 16 18 C -0.09 -3.56 4.92 30.59 0.15 -3.41 16 19 C 0.02 1.19 4.97 29.85 0.15 1.34 16 20 C -0.54 -30.26 9.11 25.60 0.23 -30.03 16 21 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 22 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 23 N -0.94 -57.10 13.29 21.45 0.28 -56.81 16 24 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 27 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 28 C -0.11 -1.63 5.78 31.68 0.18 -1.45 16 29 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 30 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 31 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.95 7.66 -2.39 -0.02 0.94 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.41 6.95 8.57 -92.71 -0.79 6.15 16 37 H 0.35 9.85 8.58 -89.69 -0.77 9.08 16 38 H 0.36 8.86 7.55 -89.69 -0.68 8.18 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 42 H 0.06 2.03 6.87 -2.38 -0.02 2.01 16 43 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 44 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 45 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 46 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.08 1.42 6.76 -2.39 -0.02 1.41 16 Total: -1.00 -74.27 385.94 1.31 -72.96 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: -1.25 Total: 27.90 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 4.31 Total: -11.83 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -3.51 Total: -97.61 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -0.26 Total: -37.43 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -74.27 1.31 -72.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594437155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.047 kcal (2) G-P(sol) polarization free energy of solvation -74.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds