Wall clock time and date at job start Fri Apr 10 2020 18:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47374 * 2 1 4 4 C 1.53005 * 109.47045 * 239.99918 * 2 1 3 5 5 N 1.46897 * 109.47274 * 120.00017 * 2 1 3 6 6 C 1.48534 * 111.00135 * 172.61664 * 5 2 1 7 7 C 1.55109 * 103.28293 * 200.33495 * 6 5 2 8 8 C 1.54589 * 102.84580 * 37.30831 * 7 6 5 9 9 H 1.09001 * 110.31212 * 97.11805 * 8 7 6 10 10 N 1.46506 * 110.30496 * 219.18419 * 8 7 6 11 11 C 1.34773 * 120.00209 * 272.20590 * 10 8 7 12 12 O 1.21586 * 119.99939 * 0.02562 * 11 10 8 13 13 N 1.34778 * 120.00160 * 179.97438 * 11 10 8 14 14 C 1.46497 * 120.00215 * 179.72647 * 13 11 10 15 15 C 1.50698 * 109.47253 * 180.27827 * 14 13 11 16 16 O 1.21287 * 120.00137 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99714 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99914 * 179.97438 * 17 15 14 19 19 H 1.08006 * 119.99688 * 0.02562 * 18 17 15 20 20 C 1.38951 * 120.00324 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00034 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99824 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46936 * 90.00008 * 22 20 18 24 24 H 1.48493 * 109.47004 * 210.00090 * 22 20 18 25 25 H 1.48505 * 109.46777 * 330.00057 * 22 20 18 26 26 C 1.47907 * 111.00014 * 55.22114 * 5 2 1 27 27 H 1.08996 * 109.46791 * 299.99934 * 1 2 3 28 28 H 1.08995 * 109.46689 * 60.00004 * 1 2 3 29 29 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47174 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46799 * 299.99747 * 3 2 1 32 32 H 1.08996 * 109.47108 * 60.00260 * 3 2 1 33 33 H 1.08998 * 109.47131 * 292.82961 * 4 2 1 34 34 H 1.08996 * 109.46998 * 52.83215 * 4 2 1 35 35 H 1.09005 * 109.47185 * 172.83266 * 4 2 1 36 36 H 1.08997 * 110.66748 * 318.71451 * 6 5 2 37 37 H 1.08997 * 110.66806 * 81.67907 * 6 5 2 38 38 H 1.09000 * 110.70881 * 278.99500 * 7 6 5 39 39 H 1.08998 * 110.80895 * 155.66427 * 7 6 5 40 40 H 0.97000 * 119.99529 * 92.21512 * 10 8 7 41 41 H 0.97000 * 119.99577 * 0.02562 * 13 11 10 42 42 H 1.09004 * 109.47240 * 300.28234 * 14 13 11 43 43 H 1.09007 * 109.46995 * 60.27776 * 14 13 11 44 44 H 0.97001 * 120.00695 * 0.02562 * 17 15 14 45 45 H 0.97004 * 119.99592 * 180.02562 * 21 20 18 46 46 H 1.09006 * 109.91640 * 26.49395 * 26 5 2 47 47 H 1.08996 * 110.08115 * 265.28722 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0197 -0.6925 1.1994 6 6 3.4937 -0.8685 1.1479 7 6 3.7500 -2.0229 2.1517 8 6 2.5350 -2.9515 1.9252 9 1 2.7997 -3.7621 1.2462 10 7 2.0636 -3.4926 3.2024 11 6 2.5975 -4.6296 3.6908 12 8 3.4708 -5.2060 3.0716 13 7 2.1642 -5.1272 4.8660 14 6 2.7403 -6.3663 5.3939 15 6 2.0829 -6.7066 6.7066 16 8 1.2179 -5.9854 7.1566 17 7 2.4556 -7.8130 7.3799 18 6 1.8579 -8.1224 8.5744 19 1 1.0881 -7.4797 8.9755 20 6 2.2424 -9.2628 9.2689 21 7 1.6692 -9.5595 10.4136 22 14 3.5743 -10.3740 8.5755 23 1 4.9004 -9.9263 9.0716 24 1 3.3289 -11.7722 9.0115 25 1 3.5522 -10.3069 7.0922 26 6 1.4538 -2.0558 1.2925 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6768 1.9563 0.8900 33 1 1.7852 -1.7793 -1.1874 34 1 1.5758 -0.2869 -2.1346 35 1 3.1225 -0.6116 -1.3157 36 1 3.8122 -1.1544 0.1455 37 1 4.0012 0.0419 1.4665 38 1 3.7634 -1.6479 3.1751 39 1 4.6801 -2.5405 1.9173 40 1 1.3670 -3.0326 3.6964 41 1 1.4677 -4.6671 5.3601 42 1 2.5739 -7.1760 4.6834 43 1 3.8112 -6.2324 5.5478 44 1 3.1472 -8.3901 7.0199 45 1 1.9379 -10.3555 10.8986 46 1 1.2036 -2.4228 0.2970 47 1 0.5630 -2.0492 1.9205 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595700570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:27 Heat of formation + Delta-G solvation = -53.279243 kcal Electronic energy + Delta-G solvation = -25977.470836 eV Core-core repulsion = 22195.566205 eV Total energy + Delta-G solvation = -3781.904631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.57465 -39.56363 -38.35732 -36.04350 -34.45399 -33.72574 -33.18103 -31.78637 -29.76131 -29.03294 -27.79308 -27.57127 -26.76697 -24.26326 -22.52727 -21.29785 -20.55803 -19.63812 -19.12315 -18.87075 -18.10396 -16.73042 -16.51511 -15.58646 -15.50714 -15.36660 -14.88813 -14.70434 -14.58351 -14.41216 -14.18737 -14.03304 -13.59888 -13.35667 -13.11598 -12.63342 -12.47868 -12.47020 -12.35400 -12.26111 -12.14751 -12.06345 -11.91057 -11.64808 -11.59674 -11.30342 -11.22824 -11.04900 -10.88574 -10.63484 -10.09378 -10.04669 -9.68896 -9.20556 -8.75638 -8.72834 -8.63176 -8.29503 -6.39957 -3.92478 2.75170 3.00481 3.05182 3.13246 3.32553 3.55990 3.59023 4.04303 4.21671 4.28640 4.37348 4.51320 4.63529 4.65039 4.74290 4.92162 4.96544 5.07886 5.14112 5.15118 5.24216 5.27177 5.36759 5.42632 5.47969 5.49807 5.54668 5.62698 5.66884 5.72756 5.77277 5.81826 5.86551 5.87468 5.93859 5.99567 6.51425 6.57550 6.65812 6.74249 7.06606 7.45993 8.01326 8.19298 8.45431 8.74820 8.82686 9.30850 9.64700 10.72209 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.038234 B = 0.002111 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.161838 B =13262.983134 C =13605.622789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.091 3.909 3 C -0.135 4.135 4 C -0.185 4.185 5 N -0.502 5.502 6 C 0.029 3.971 7 C -0.135 4.135 8 C 0.158 3.842 9 H 0.093 0.907 10 N -0.739 5.739 11 C 0.706 3.294 12 O -0.600 6.600 13 N -0.725 5.725 14 C 0.126 3.874 15 C 0.439 3.561 16 O -0.579 6.579 17 N -0.577 5.577 18 C -0.310 4.310 19 H 0.121 0.879 20 C 0.045 3.955 21 N -0.875 5.875 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.267 1.267 26 C 0.025 3.975 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.399 0.601 41 H 0.408 0.592 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.374 0.626 45 H 0.275 0.725 46 H 0.061 0.939 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.112 17.997 -22.973 29.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.001 3.999 3 C -0.193 4.193 4 C -0.243 4.243 5 N -0.227 5.227 6 C -0.099 4.099 7 C -0.174 4.174 8 C 0.051 3.949 9 H 0.111 0.889 10 N -0.395 5.395 11 C 0.406 3.594 12 O -0.479 6.479 13 N -0.382 5.382 14 C -0.002 4.002 15 C 0.225 3.775 16 O -0.463 6.463 17 N -0.215 5.215 18 C -0.438 4.438 19 H 0.139 0.861 20 C -0.160 4.160 21 N -0.514 5.514 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.192 1.192 26 C -0.103 4.103 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.233 0.767 41 H 0.246 0.754 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.208 0.792 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.137 18.092 -22.568 29.004 hybrid contribution 0.614 -1.137 -0.607 1.427 sum 2.750 16.955 -23.175 28.846 Atomic orbital electron populations 1.21908 0.93521 1.02195 1.02288 1.21231 0.95601 0.94819 0.88224 1.21802 1.00986 0.94408 1.02069 1.22543 1.01841 1.01196 0.98763 1.65038 1.05483 1.15643 1.36487 1.23368 0.88815 0.99019 0.98696 1.22997 0.98498 0.95482 1.00438 1.21566 0.93035 0.95454 0.84821 0.88885 1.45141 1.43937 1.26362 1.24047 1.15852 0.81761 0.80679 0.81139 1.90892 1.34315 1.61938 1.60720 1.44755 1.43998 1.27495 1.21986 1.20793 0.98059 0.86670 0.94696 1.19667 0.87026 0.83910 0.86928 1.90534 1.34612 1.51340 1.69849 1.42119 1.35995 1.22262 1.21088 1.19440 1.20130 1.09311 0.94929 0.86095 1.25069 0.97905 0.97218 0.95768 1.69620 1.41344 1.26599 1.13804 0.86667 0.82288 0.81206 0.79319 1.19392 1.20007 1.19208 1.23188 0.98057 0.88462 1.00603 0.91659 0.92219 0.92491 0.92666 0.92348 0.91731 0.92134 0.91924 0.91951 0.92758 0.89893 0.90182 0.90439 0.76658 0.75450 0.89946 0.89914 0.79236 0.91405 0.92112 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.27 37.16 0.31 -0.57 16 2 C 0.09 0.60 0.69 -131.60 -0.09 0.51 16 3 C -0.14 -0.82 8.48 37.16 0.32 -0.50 16 4 C -0.19 -1.13 7.59 37.16 0.28 -0.85 16 5 N -0.50 -3.95 5.09 -214.73 -1.09 -5.04 16 6 C 0.03 0.22 5.49 -1.80 -0.01 0.21 16 7 C -0.13 -1.29 6.79 -24.78 -0.17 -1.46 16 8 C 0.16 1.60 3.31 -66.57 -0.22 1.38 16 9 H 0.09 1.08 7.60 -51.93 -0.39 0.69 16 10 N -0.74 -8.50 5.07 -57.35 -0.29 -8.79 16 11 C 0.71 10.91 8.56 -86.92 -0.74 10.17 16 12 O -0.60 -11.12 16.02 5.29 0.08 -11.04 16 13 N -0.72 -11.65 5.53 -66.41 -0.37 -12.02 16 14 C 0.13 2.22 6.15 -5.20 -0.03 2.19 16 15 C 0.44 9.68 7.85 -10.99 -0.09 9.59 16 16 O -0.58 -14.64 15.24 5.55 0.08 -14.55 16 17 N -0.58 -13.46 5.09 -10.96 -0.06 -13.52 16 18 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 19 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16 20 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 21 N -0.87 -25.02 13.96 55.50 0.77 -24.25 16 22 Si 0.88 19.06 27.74 -169.99 -4.71 14.35 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 26 C 0.03 0.20 4.87 -2.75 -0.01 0.19 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.36 6.77 -51.93 -0.35 0.01 16 30 H 0.05 0.33 7.15 -51.93 -0.37 -0.04 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.40 6.05 -51.93 -0.31 0.08 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.38 6.37 -51.93 -0.33 0.05 16 36 H 0.05 0.39 5.54 -51.93 -0.29 0.10 16 37 H 0.08 0.61 7.71 -51.93 -0.40 0.21 16 38 H 0.08 0.84 8.06 -51.93 -0.42 0.43 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.40 3.84 8.34 -40.82 -0.34 3.50 16 41 H 0.41 6.43 7.45 -40.82 -0.30 6.13 16 42 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 45 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.06 0.46 5.29 -51.93 -0.27 0.19 16 47 H 0.09 0.69 7.63 -51.93 -0.40 0.29 16 LS Contribution 368.76 15.07 5.56 5.56 Total: -1.00 -32.36 368.76 -8.09 -40.45 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -7.36 Total: 15.60 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -0.71 Total: 13.25 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -1.03 Total: -63.62 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: 0.17 Total: -25.59 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.36 -8.09 -40.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595700570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.834 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds