Wall clock time and date at job start Fri Apr 10 2020 18:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47374 * 2 1 4 4 C 1.53005 * 109.47045 * 239.99918 * 2 1 3 5 5 N 1.46897 * 109.47274 * 120.00017 * 2 1 3 6 6 C 1.48534 * 111.00135 * 172.61664 * 5 2 1 7 7 C 1.55109 * 103.28293 * 200.33495 * 6 5 2 8 8 C 1.54589 * 102.84580 * 37.30831 * 7 6 5 9 9 H 1.09001 * 110.31212 * 97.11805 * 8 7 6 10 10 N 1.46506 * 110.30496 * 219.18419 * 8 7 6 11 11 C 1.34773 * 120.00209 * 272.20590 * 10 8 7 12 12 O 1.21586 * 119.99939 * 0.02562 * 11 10 8 13 13 N 1.34778 * 120.00160 * 179.97438 * 11 10 8 14 14 C 1.46497 * 120.00215 * 179.72647 * 13 11 10 15 15 C 1.50698 * 109.47253 * 180.27827 * 14 13 11 16 16 O 1.21287 * 120.00137 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99714 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99914 * 179.97438 * 17 15 14 19 19 H 1.08006 * 119.99688 * 0.02562 * 18 17 15 20 20 C 1.38951 * 120.00324 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00034 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99824 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46936 * 90.00008 * 22 20 18 24 24 H 1.48493 * 109.47004 * 210.00090 * 22 20 18 25 25 H 1.48505 * 109.46777 * 330.00057 * 22 20 18 26 26 C 1.47907 * 111.00014 * 55.22114 * 5 2 1 27 27 H 1.08996 * 109.46791 * 299.99934 * 1 2 3 28 28 H 1.08995 * 109.46689 * 60.00004 * 1 2 3 29 29 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47174 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46799 * 299.99747 * 3 2 1 32 32 H 1.08996 * 109.47108 * 60.00260 * 3 2 1 33 33 H 1.08998 * 109.47131 * 292.82961 * 4 2 1 34 34 H 1.08996 * 109.46998 * 52.83215 * 4 2 1 35 35 H 1.09005 * 109.47185 * 172.83266 * 4 2 1 36 36 H 1.08997 * 110.66748 * 318.71451 * 6 5 2 37 37 H 1.08997 * 110.66806 * 81.67907 * 6 5 2 38 38 H 1.09000 * 110.70881 * 278.99500 * 7 6 5 39 39 H 1.08998 * 110.80895 * 155.66427 * 7 6 5 40 40 H 0.97000 * 119.99529 * 92.21512 * 10 8 7 41 41 H 0.97000 * 119.99577 * 0.02562 * 13 11 10 42 42 H 1.09004 * 109.47240 * 300.28234 * 14 13 11 43 43 H 1.09007 * 109.46995 * 60.27776 * 14 13 11 44 44 H 0.97001 * 120.00695 * 0.02562 * 17 15 14 45 45 H 0.97004 * 119.99592 * 180.02562 * 21 20 18 46 46 H 1.09006 * 109.91640 * 26.49395 * 26 5 2 47 47 H 1.08996 * 110.08115 * 265.28722 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0197 -0.6925 1.1994 6 6 3.4937 -0.8685 1.1479 7 6 3.7500 -2.0229 2.1517 8 6 2.5350 -2.9515 1.9252 9 1 2.7997 -3.7621 1.2462 10 7 2.0636 -3.4926 3.2024 11 6 2.5975 -4.6296 3.6908 12 8 3.4708 -5.2060 3.0716 13 7 2.1642 -5.1272 4.8660 14 6 2.7403 -6.3663 5.3939 15 6 2.0829 -6.7066 6.7066 16 8 1.2179 -5.9854 7.1566 17 7 2.4556 -7.8130 7.3799 18 6 1.8579 -8.1224 8.5744 19 1 1.0881 -7.4797 8.9755 20 6 2.2424 -9.2628 9.2689 21 7 1.6692 -9.5595 10.4136 22 14 3.5743 -10.3740 8.5755 23 1 4.9004 -9.9263 9.0716 24 1 3.3289 -11.7722 9.0115 25 1 3.5522 -10.3069 7.0922 26 6 1.4538 -2.0558 1.2925 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6768 1.9563 0.8900 33 1 1.7852 -1.7793 -1.1874 34 1 1.5758 -0.2869 -2.1346 35 1 3.1225 -0.6116 -1.3157 36 1 3.8122 -1.1544 0.1455 37 1 4.0012 0.0419 1.4665 38 1 3.7634 -1.6479 3.1751 39 1 4.6801 -2.5405 1.9173 40 1 1.3670 -3.0326 3.6964 41 1 1.4677 -4.6671 5.3601 42 1 2.5739 -7.1760 4.6834 43 1 3.8112 -6.2324 5.5478 44 1 3.1472 -8.3901 7.0199 45 1 1.9379 -10.3555 10.8986 46 1 1.2036 -2.4228 0.2970 47 1 0.5630 -2.0492 1.9205 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595700570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:26 Heat of formation + Delta-G solvation = -79.708615 kcal Electronic energy + Delta-G solvation = -25978.616900 eV Core-core repulsion = 22195.566205 eV Total energy + Delta-G solvation = -3783.050694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.50286 -40.69390 -39.98333 -36.87915 -36.23714 -35.27061 -34.10307 -33.80233 -30.40322 -30.06133 -28.70819 -28.26186 -27.54760 -26.07811 -23.18866 -22.36107 -21.55267 -21.43399 -20.58950 -19.69387 -19.56390 -17.72536 -17.48547 -17.11238 -16.84595 -16.77041 -16.22666 -15.77337 -15.51778 -15.28930 -15.25000 -15.05127 -14.89753 -14.43618 -14.30320 -13.99442 -13.95405 -13.72774 -13.22614 -12.98899 -12.95670 -12.86827 -12.78747 -12.58864 -12.44159 -12.29791 -12.17589 -11.99782 -11.86322 -11.75365 -11.57570 -11.46699 -11.35262 -10.64733 -10.40327 -10.31190 -9.82496 -9.27555 -8.45077 -6.07002 1.31649 1.34647 1.44209 1.59491 1.79598 2.12252 2.20990 2.79297 2.96498 3.11197 3.30908 3.54672 3.70813 3.99445 4.00382 4.02920 4.16299 4.28423 4.31368 4.35286 4.41284 4.45698 4.63001 4.68139 4.74136 4.77414 4.87658 4.91926 4.97444 5.01663 5.04276 5.06823 5.14799 5.26805 5.30480 5.36548 5.47319 5.49322 5.59737 5.88704 5.90489 5.99389 6.18199 6.49432 6.78709 7.02685 7.29203 7.53939 7.78924 8.71307 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.038234 B = 0.002111 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.161838 B =13262.983134 C =13605.622789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.088 3.912 3 C -0.133 4.133 4 C -0.182 4.182 5 N -0.509 5.509 6 C 0.036 3.964 7 C -0.132 4.132 8 C 0.155 3.845 9 H 0.080 0.920 10 N -0.724 5.724 11 C 0.707 3.293 12 O -0.629 6.629 13 N -0.727 5.727 14 C 0.139 3.861 15 C 0.446 3.554 16 O -0.614 6.614 17 N -0.578 5.578 18 C -0.331 4.331 19 H 0.063 0.937 20 C -0.009 4.009 21 N -0.926 5.926 22 Si 0.959 3.041 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.232 1.232 26 C 0.034 3.966 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.409 0.591 41 H 0.409 0.591 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.392 0.608 45 H 0.281 0.719 46 H 0.069 0.931 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.518 18.175 -25.583 31.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.001 4.001 3 C -0.190 4.190 4 C -0.240 4.240 5 N -0.234 5.234 6 C -0.092 4.092 7 C -0.172 4.172 8 C 0.050 3.950 9 H 0.098 0.902 10 N -0.380 5.380 11 C 0.407 3.593 12 O -0.510 6.510 13 N -0.385 5.385 14 C 0.010 3.990 15 C 0.233 3.767 16 O -0.500 6.500 17 N -0.218 5.218 18 C -0.460 4.460 19 H 0.081 0.919 20 C -0.209 4.209 21 N -0.566 5.566 22 Si 0.779 3.221 23 H -0.181 1.181 24 H -0.198 1.198 25 H -0.156 1.156 26 C -0.095 4.095 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.246 0.754 41 H 0.247 0.753 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.228 0.772 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.524 18.320 -25.209 31.362 hybrid contribution 0.078 -1.048 0.205 1.071 sum 3.602 17.272 -25.004 30.602 Atomic orbital electron populations 1.21897 0.93202 1.02128 1.02509 1.21317 0.95869 0.95039 0.87914 1.21785 1.00996 0.93979 1.02264 1.22508 1.01914 1.00815 0.98793 1.65063 1.05453 1.15364 1.37523 1.23320 0.88933 0.98440 0.98491 1.22924 0.97863 0.95948 1.00425 1.21672 0.94136 0.95394 0.83845 0.90216 1.45088 1.43477 1.25087 1.24332 1.15910 0.81500 0.81282 0.80629 1.90873 1.35702 1.63056 1.61411 1.44722 1.44164 1.27237 1.22368 1.20681 0.98365 0.87916 0.91998 1.20516 0.85806 0.82565 0.87775 1.90523 1.36104 1.52284 1.71114 1.41921 1.36585 1.23221 1.20089 1.19027 1.20241 1.09553 0.97152 0.91856 1.26077 1.00589 0.98548 0.95698 1.69782 1.43488 1.27641 1.15646 0.85440 0.78249 0.77942 0.80465 1.18088 1.19838 1.15574 1.23107 0.97291 0.88269 1.00816 0.92345 0.91126 0.92684 0.92624 0.91226 0.92484 0.92625 0.91008 0.91900 0.91970 0.89335 0.91161 0.91222 0.75426 0.75310 0.88110 0.88070 0.77220 0.90937 0.91314 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.27 71.98 0.60 -0.89 16 2 C 0.09 1.00 0.69 3.53 0.00 1.00 16 3 C -0.13 -1.35 8.48 71.98 0.61 -0.74 16 4 C -0.18 -1.83 7.59 71.98 0.55 -1.29 16 5 N -0.51 -7.17 5.09 -833.29 -4.24 -11.42 16 6 C 0.04 0.50 5.49 86.71 0.48 0.98 16 7 C -0.13 -2.40 6.79 31.86 0.22 -2.19 16 8 C 0.16 2.97 3.31 45.87 0.15 3.12 16 9 H 0.08 1.78 7.60 -2.39 -0.02 1.76 16 10 N -0.72 -15.79 5.07 -453.62 -2.30 -18.09 16 11 C 0.71 20.89 8.56 179.06 1.53 22.42 16 12 O -0.63 -22.40 16.02 -3.99 -0.06 -22.46 16 13 N -0.73 -22.42 5.53 -482.30 -2.67 -25.09 16 14 C 0.14 4.60 6.15 85.63 0.53 5.12 16 15 C 0.45 19.47 7.85 87.66 0.69 20.16 16 16 O -0.61 -31.67 15.24 -3.05 -0.05 -31.71 16 17 N -0.58 -26.63 5.09 -306.99 -1.56 -28.20 16 18 C -0.33 -18.81 10.16 84.04 0.85 -17.95 16 19 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 20 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 21 N -0.93 -54.48 13.96 21.66 0.30 -54.18 16 22 Si 0.96 38.19 27.74 68.60 1.90 40.09 16 23 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 25 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 26 C 0.03 0.49 4.87 86.44 0.42 0.91 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.60 6.77 -2.39 -0.02 0.59 16 30 H 0.05 0.56 7.15 -2.38 -0.02 0.54 16 31 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 0.62 6.05 -2.39 -0.01 0.61 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.63 6.37 -2.38 -0.02 0.62 16 36 H 0.06 0.78 5.54 -2.39 -0.01 0.77 16 37 H 0.09 1.16 7.71 -2.39 -0.02 1.14 16 38 H 0.07 1.42 8.06 -2.39 -0.02 1.40 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.41 7.35 8.34 -92.71 -0.77 6.57 16 41 H 0.41 12.60 7.45 -92.71 -0.69 11.91 16 42 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 43 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 44 H 0.39 15.17 5.76 -92.71 -0.53 14.63 16 45 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 46 H 0.07 0.92 5.29 -2.38 -0.01 0.91 16 47 H 0.09 1.27 7.63 -2.39 -0.02 1.25 16 Total: -1.00 -72.46 368.76 -2.64 -75.10 By element: Atomic # 1 Polarization: 46.40 SS G_CDS: -1.05 Total: 45.35 kcal Atomic # 6 Polarization: 23.53 SS G_CDS: 7.09 Total: 30.62 kcal Atomic # 7 Polarization: -126.51 SS G_CDS: -10.47 Total: -136.98 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -0.11 Total: -54.18 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 1.90 Total: 40.09 kcal Total: -72.46 -2.64 -75.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595700570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.608 kcal (2) G-P(sol) polarization free energy of solvation -72.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds