Wall clock time and date at job start Fri Apr 10 2020 18:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99939 * 2 1 4 4 H 1.48501 * 109.46875 * 240.00279 * 3 2 1 5 5 H 1.48500 * 109.47268 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47137 * 120.00158 * 3 2 1 7 7 C 1.37875 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99601 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00489 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.46995 * 184.84607 * 9 7 2 11 11 C 1.42898 * 113.99498 * 184.82547 * 10 9 7 12 12 C 1.53004 * 109.46633 * 184.83337 * 11 10 9 13 13 N 1.46893 * 109.47530 * 64.11406 * 12 11 10 14 14 C 1.46897 * 111.00044 * 75.55083 * 13 12 11 15 15 C 1.53003 * 109.47284 * 190.00152 * 14 13 12 16 16 N 1.46897 * 109.47284 * 179.97438 * 15 14 13 17 17 C 1.47016 * 111.00278 * 293.63798 * 16 15 14 18 18 C 1.53095 * 109.25909 * 177.60438 * 17 16 15 19 19 O 1.43019 * 109.25781 * 56.84889 * 18 17 16 20 20 C 1.43015 * 113.73747 * 301.33203 * 19 18 17 21 21 C 1.47017 * 110.99980 * 170.00022 * 16 15 14 22 22 C 1.46903 * 111.00271 * 199.51022 * 13 12 11 23 23 C 1.52993 * 109.47092 * 68.63730 * 22 13 12 24 24 C 1.53006 * 117.49904 * 242.59576 * 23 22 13 25 25 C 1.52999 * 117.49716 * 173.93944 * 23 22 13 26 26 H 0.96999 * 119.99586 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47112 * 64.84224 * 9 7 2 28 28 H 1.08999 * 109.46726 * 304.84523 * 9 7 2 29 29 H 1.09002 * 109.47189 * 64.83513 * 11 10 9 30 30 H 1.08993 * 109.47569 * 304.83170 * 11 10 9 31 31 H 1.09002 * 109.47057 * 304.10840 * 12 11 10 32 32 H 1.09003 * 109.46786 * 184.11376 * 12 11 10 33 33 H 1.09002 * 109.47119 * 70.00731 * 14 13 12 34 34 H 1.08994 * 109.47562 * 310.00424 * 14 13 12 35 35 H 1.09002 * 109.47027 * 59.99970 * 15 14 13 36 36 H 1.08994 * 109.47042 * 300.00590 * 15 14 13 37 37 H 1.09001 * 109.50392 * 297.54068 * 17 16 15 38 38 H 1.09000 * 109.50538 * 57.66768 * 17 16 15 39 39 H 1.08992 * 109.51223 * 296.91740 * 18 17 16 40 40 H 1.09000 * 109.54197 * 176.79836 * 18 17 16 41 41 H 1.09004 * 109.50523 * 298.72747 * 20 19 18 42 42 H 1.09004 * 109.53964 * 178.62526 * 20 19 18 43 43 H 1.08998 * 109.50409 * 302.32923 * 21 16 15 44 44 H 1.09002 * 109.50470 * 62.41893 * 21 16 15 45 45 H 1.09001 * 109.47167 * 188.63968 * 22 13 12 46 46 H 1.09006 * 109.46581 * 308.63575 * 22 13 12 47 47 H 1.08999 * 115.55112 * 28.27248 * 23 22 13 48 48 H 1.08996 * 117.49598 * 0.02562 * 24 23 22 49 49 H 1.09002 * 117.49602 * 145.01693 * 24 23 22 50 50 H 1.08998 * 117.50110 * 214.97868 * 25 23 22 51 51 H 1.09002 * 117.49985 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 2.1754 -3.5830 0.1117 11 6 1.5720 -4.8744 0.0109 12 6 2.6281 -5.9519 0.2654 13 7 3.1200 -5.8394 1.6449 14 6 2.1368 -6.3687 2.5993 15 6 2.5659 -6.0123 4.0240 16 7 1.5823 -6.5412 4.9784 17 6 0.2867 -5.8624 4.8303 18 6 -0.7225 -6.4835 5.7997 19 8 -0.2131 -6.3929 7.1330 20 6 1.0475 -7.0439 7.3131 21 6 2.0746 -6.4285 6.3591 22 6 4.4171 -6.5118 1.7978 23 6 5.4871 -5.7377 1.0253 24 6 6.1837 -6.4580 -0.1309 25 6 6.9385 -6.1981 1.1751 26 1 -0.4849 0.8401 0.0004 27 1 0.6913 -2.5948 -0.9321 28 1 0.5605 -2.5208 0.8414 29 1 1.1546 -5.0034 -0.9877 30 1 0.7770 -4.9629 0.7512 31 1 3.4580 -5.8183 -0.4285 32 1 2.1853 -6.9368 0.1167 33 1 2.0789 -7.4525 2.4977 34 1 1.1596 -5.9318 2.3942 35 1 2.6239 -4.9286 4.1256 36 1 3.5431 -6.4492 4.2291 37 1 0.4033 -4.8024 5.0559 38 1 -0.0711 -5.9803 3.8074 39 1 -0.8794 -7.5305 5.5405 40 1 -1.6688 -5.9465 5.7344 41 1 0.9421 -8.1072 7.0979 42 1 1.3820 -6.9123 8.3422 43 1 3.0219 -6.9596 6.4522 44 1 2.2205 -5.3776 6.6089 45 1 4.6857 -6.5476 2.8536 46 1 4.3487 -7.5266 1.4058 47 1 5.3071 -4.6682 0.9166 48 1 5.8793 -7.4833 -0.3415 49 1 6.4621 -5.8623 -1.0002 50 1 7.7133 -5.4316 1.1646 51 1 7.1311 -7.0523 1.8244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595809580.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:29 Heat of formation + Delta-G solvation = -54.120570 kcal Electronic energy + Delta-G solvation = -27050.312795 eV Core-core repulsion = 23371.912025 eV Total energy + Delta-G solvation = -3678.400770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.76386 -38.61748 -36.77225 -36.29574 -35.08593 -32.66642 -31.38547 -30.39740 -29.09966 -27.05441 -26.64979 -24.57027 -24.17744 -22.43497 -22.24266 -21.89933 -20.89505 -20.44682 -19.93798 -16.86405 -16.33834 -16.31893 -16.24204 -15.72470 -15.36047 -15.21152 -14.98568 -14.89902 -14.70244 -14.52851 -14.22101 -13.68491 -13.64554 -13.37214 -12.89196 -12.77092 -12.45494 -12.26239 -11.88495 -11.68648 -11.61689 -11.52996 -11.48260 -11.31376 -10.96794 -10.89823 -10.81969 -10.70375 -10.60599 -10.39685 -10.14642 -9.95841 -9.81761 -9.74492 -9.05896 -8.73203 -8.52746 -8.09070 -8.05471 -6.06380 -4.07253 3.34568 3.37116 3.41145 3.45028 3.71473 3.85626 4.14757 4.38889 4.66953 4.76745 4.82592 4.85426 4.92859 4.96455 4.98821 5.08535 5.12654 5.19187 5.28744 5.30136 5.36913 5.42166 5.45235 5.48131 5.57652 5.62518 5.63258 5.65691 5.75005 5.76837 5.79146 5.86076 5.90125 5.93649 6.03409 6.08844 6.13555 6.16646 6.32798 6.49391 6.78824 6.82177 6.97032 7.15841 7.27844 7.31818 7.50081 7.85011 8.22494 8.68708 9.07352 9.57438 11.05203 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.007909 B = 0.004024 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3539.450150 B = 6956.476961 C = 9327.450291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.065 0.935 9 C 0.196 3.804 10 O -0.379 6.379 11 C 0.070 3.930 12 C 0.062 3.938 13 N -0.521 5.521 14 C 0.061 3.939 15 C 0.058 3.942 16 N -0.538 5.538 17 C 0.012 3.988 18 C 0.065 3.935 19 O -0.387 6.387 20 C 0.065 3.935 21 C 0.018 3.982 22 C 0.088 3.912 23 C -0.140 4.140 24 C -0.185 4.185 25 C -0.182 4.182 26 H 0.263 0.737 27 H -0.003 1.003 28 H 0.005 0.995 29 H 0.037 0.963 30 H 0.032 0.968 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.045 0.955 45 H 0.075 0.925 46 H 0.029 0.971 47 H 0.122 0.878 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.093 0.907 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.391 -18.340 9.314 21.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.121 3.879 10 O -0.298 6.298 11 C -0.009 4.009 12 C -0.066 4.066 13 N -0.246 5.246 14 C -0.068 4.068 15 C -0.070 4.070 16 N -0.264 5.264 17 C -0.116 4.116 18 C -0.012 4.012 19 O -0.306 6.306 20 C -0.012 4.012 21 C -0.111 4.111 22 C -0.040 4.040 23 C -0.159 4.159 24 C -0.222 4.222 25 C -0.219 4.219 26 H 0.073 0.927 27 H 0.015 0.985 28 H 0.023 0.977 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.063 0.937 45 H 0.094 0.906 46 H 0.047 0.953 47 H 0.140 0.860 48 H 0.106 0.894 49 H 0.111 0.889 50 H 0.111 0.889 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.323 -18.085 9.487 21.105 hybrid contribution 0.220 0.782 -0.381 0.897 sum 5.543 -17.303 9.106 20.324 Atomic orbital electron populations 1.69958 1.06079 1.27111 1.50808 1.24933 0.94937 0.99323 0.95267 0.86432 0.79344 0.82104 0.78806 1.20062 1.21207 1.20059 1.21020 0.93975 0.89424 1.50425 0.91690 1.20140 0.88955 0.83967 0.94808 1.87931 1.35712 1.12298 1.93863 1.22216 0.94251 0.86364 0.98045 1.22152 0.99026 0.95852 0.89529 1.61745 1.02107 1.56399 1.04299 1.22037 0.96302 0.97235 0.91179 1.22115 0.94565 0.99080 0.91220 1.62193 1.03532 1.56653 1.04032 1.22864 0.90370 0.97198 1.01132 1.22682 0.96335 1.00681 0.81518 1.87986 1.36170 1.77209 1.29190 1.22638 0.83331 0.96293 0.98951 1.22761 0.98924 1.00528 0.88843 1.21686 0.88754 0.93870 0.99711 1.22377 0.91832 1.01295 1.00386 1.23041 1.05220 1.01207 0.92751 1.22926 0.95252 1.03266 1.00491 0.92715 0.98492 0.97695 0.94543 0.94939 0.89733 0.94371 0.94599 0.90453 0.93041 0.90774 0.93294 0.89212 0.92417 0.88345 0.92445 0.88624 0.89796 0.93702 0.90635 0.95270 0.86031 0.89368 0.88867 0.88897 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.91 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.51 -15.22 9.43 -34.44 -0.32 -15.55 16 8 H 0.06 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.20 5.45 5.69 36.01 0.20 5.65 16 10 O -0.38 -9.21 10.26 -35.23 -0.36 -9.57 16 11 C 0.07 1.30 6.12 37.16 0.23 1.53 16 12 C 0.06 0.94 5.23 -3.83 -0.02 0.92 16 13 N -0.52 -7.66 4.35 -234.63 -1.02 -8.68 16 14 C 0.06 0.80 4.72 -3.82 -0.02 0.78 16 15 C 0.06 0.73 4.91 -3.82 -0.02 0.71 16 16 N -0.54 -6.25 4.73 -234.31 -1.11 -7.35 16 17 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 18 C 0.06 0.69 7.01 37.21 0.26 0.95 16 19 O -0.39 -4.61 10.83 -35.23 -0.38 -5.00 16 20 C 0.07 0.61 7.01 37.21 0.26 0.87 16 21 C 0.02 0.18 5.65 -3.71 -0.02 0.16 16 22 C 0.09 1.08 5.11 -3.83 -0.02 1.06 16 23 C -0.14 -1.80 4.78 -90.62 -0.43 -2.24 16 24 C -0.19 -2.06 10.01 -26.69 -0.27 -2.33 16 25 C -0.18 -1.93 10.25 -26.69 -0.27 -2.20 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 28 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.03 0.60 6.66 -51.93 -0.35 0.25 16 31 H 0.08 1.30 6.83 -51.93 -0.35 0.95 16 32 H 0.04 0.49 8.00 -51.93 -0.42 0.08 16 33 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.08 1.11 4.94 -51.93 -0.26 0.86 16 35 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 36 H 0.07 0.85 6.22 -51.93 -0.32 0.52 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.06 6.38 -51.93 -0.33 0.73 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 44 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.87 6.01 -51.93 -0.31 0.56 16 46 H 0.03 0.34 7.83 -51.93 -0.41 -0.07 16 47 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 48 H 0.09 0.90 8.03 -51.93 -0.42 0.48 16 49 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 50 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 51 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -32.10 398.34 -11.18 -43.28 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -9.47 Total: -1.30 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -0.56 Total: -8.02 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -1.39 Total: -42.53 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.74 Total: -14.57 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.10 -11.18 -43.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595809580.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.843 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds