Wall clock time and date at job start Fri Apr 10 2020 18:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99939 * 2 1 4 4 H 1.48501 * 109.46875 * 240.00279 * 3 2 1 5 5 H 1.48500 * 109.47268 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47137 * 120.00158 * 3 2 1 7 7 C 1.37875 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99601 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00489 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.46995 * 184.84607 * 9 7 2 11 11 C 1.42898 * 113.99498 * 184.82547 * 10 9 7 12 12 C 1.53004 * 109.46633 * 184.83337 * 11 10 9 13 13 N 1.46893 * 109.47530 * 64.11406 * 12 11 10 14 14 C 1.46897 * 111.00044 * 75.55083 * 13 12 11 15 15 C 1.53003 * 109.47284 * 190.00152 * 14 13 12 16 16 N 1.46897 * 109.47284 * 179.97438 * 15 14 13 17 17 C 1.47016 * 111.00278 * 293.63798 * 16 15 14 18 18 C 1.53095 * 109.25909 * 177.60438 * 17 16 15 19 19 O 1.43019 * 109.25781 * 56.84889 * 18 17 16 20 20 C 1.43015 * 113.73747 * 301.33203 * 19 18 17 21 21 C 1.47017 * 110.99980 * 170.00022 * 16 15 14 22 22 C 1.46903 * 111.00271 * 199.51022 * 13 12 11 23 23 C 1.52993 * 109.47092 * 68.63730 * 22 13 12 24 24 C 1.53006 * 117.49904 * 242.59576 * 23 22 13 25 25 C 1.52999 * 117.49716 * 173.93944 * 23 22 13 26 26 H 0.96999 * 119.99586 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47112 * 64.84224 * 9 7 2 28 28 H 1.08999 * 109.46726 * 304.84523 * 9 7 2 29 29 H 1.09002 * 109.47189 * 64.83513 * 11 10 9 30 30 H 1.08993 * 109.47569 * 304.83170 * 11 10 9 31 31 H 1.09002 * 109.47057 * 304.10840 * 12 11 10 32 32 H 1.09003 * 109.46786 * 184.11376 * 12 11 10 33 33 H 1.09002 * 109.47119 * 70.00731 * 14 13 12 34 34 H 1.08994 * 109.47562 * 310.00424 * 14 13 12 35 35 H 1.09002 * 109.47027 * 59.99970 * 15 14 13 36 36 H 1.08994 * 109.47042 * 300.00590 * 15 14 13 37 37 H 1.09001 * 109.50392 * 297.54068 * 17 16 15 38 38 H 1.09000 * 109.50538 * 57.66768 * 17 16 15 39 39 H 1.08992 * 109.51223 * 296.91740 * 18 17 16 40 40 H 1.09000 * 109.54197 * 176.79836 * 18 17 16 41 41 H 1.09004 * 109.50523 * 298.72747 * 20 19 18 42 42 H 1.09004 * 109.53964 * 178.62526 * 20 19 18 43 43 H 1.08998 * 109.50409 * 302.32923 * 21 16 15 44 44 H 1.09002 * 109.50470 * 62.41893 * 21 16 15 45 45 H 1.09001 * 109.47167 * 188.63968 * 22 13 12 46 46 H 1.09006 * 109.46581 * 308.63575 * 22 13 12 47 47 H 1.08999 * 115.55112 * 28.27248 * 23 22 13 48 48 H 1.08996 * 117.49598 * 0.02562 * 24 23 22 49 49 H 1.09002 * 117.49602 * 145.01693 * 24 23 22 50 50 H 1.08998 * 117.50110 * 214.97868 * 25 23 22 51 51 H 1.09002 * 117.49985 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 2.1754 -3.5830 0.1117 11 6 1.5720 -4.8744 0.0109 12 6 2.6281 -5.9519 0.2654 13 7 3.1200 -5.8394 1.6449 14 6 2.1368 -6.3687 2.5993 15 6 2.5659 -6.0123 4.0240 16 7 1.5823 -6.5412 4.9784 17 6 0.2867 -5.8624 4.8303 18 6 -0.7225 -6.4835 5.7997 19 8 -0.2131 -6.3929 7.1330 20 6 1.0475 -7.0439 7.3131 21 6 2.0746 -6.4285 6.3591 22 6 4.4171 -6.5118 1.7978 23 6 5.4871 -5.7377 1.0253 24 6 6.1837 -6.4580 -0.1309 25 6 6.9385 -6.1981 1.1751 26 1 -0.4849 0.8401 0.0004 27 1 0.6913 -2.5948 -0.9321 28 1 0.5605 -2.5208 0.8414 29 1 1.1546 -5.0034 -0.9877 30 1 0.7770 -4.9629 0.7512 31 1 3.4580 -5.8183 -0.4285 32 1 2.1853 -6.9368 0.1167 33 1 2.0789 -7.4525 2.4977 34 1 1.1596 -5.9318 2.3942 35 1 2.6239 -4.9286 4.1256 36 1 3.5431 -6.4492 4.2291 37 1 0.4033 -4.8024 5.0559 38 1 -0.0711 -5.9803 3.8074 39 1 -0.8794 -7.5305 5.5405 40 1 -1.6688 -5.9465 5.7344 41 1 0.9421 -8.1072 7.0979 42 1 1.3820 -6.9123 8.3422 43 1 3.0219 -6.9596 6.4522 44 1 2.2205 -5.3776 6.6089 45 1 4.6857 -6.5476 2.8536 46 1 4.3487 -7.5266 1.4058 47 1 5.3071 -4.6682 0.9166 48 1 5.8793 -7.4833 -0.3415 49 1 6.4621 -5.8623 -1.0002 50 1 7.7133 -5.4316 1.1646 51 1 7.1311 -7.0523 1.8244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595809580.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:28 Heat of formation + Delta-G solvation = -76.645709 kcal Electronic energy + Delta-G solvation = -27051.289558 eV Core-core repulsion = 23371.912025 eV Total energy + Delta-G solvation = -3679.377533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.68138 -39.71073 -38.31394 -37.42331 -36.20939 -34.88082 -32.23182 -31.67683 -30.34781 -28.96056 -27.74946 -25.74656 -25.04562 -24.45243 -23.37413 -22.99363 -21.97907 -21.36184 -21.01222 -18.63183 -17.78700 -17.45493 -17.33785 -17.16474 -16.55694 -16.31155 -16.30488 -16.03256 -15.92691 -15.73996 -15.51038 -15.04072 -14.92529 -14.51014 -14.28972 -13.99172 -13.58463 -13.47317 -13.23804 -13.18319 -12.93208 -12.77740 -12.63267 -12.46850 -12.36964 -12.32782 -12.25965 -12.01876 -11.89816 -11.66236 -11.47371 -11.27312 -11.09924 -10.85230 -10.69967 -10.68234 -10.15895 -9.52200 -9.15275 -8.32091 -6.44012 1.37564 1.42518 1.50813 2.33840 2.47814 2.90397 2.96000 3.01013 3.13245 3.27011 3.73316 3.87415 3.89534 3.99246 4.07435 4.10144 4.16597 4.17577 4.23818 4.27658 4.32079 4.40597 4.44003 4.50369 4.55121 4.57290 4.62596 4.69138 4.74066 4.79296 4.80874 4.82611 4.83268 4.88459 4.93004 4.95367 4.99607 5.04286 5.08156 5.19240 5.30065 5.42985 5.54875 5.79914 5.89647 5.97731 6.14634 6.15933 6.27283 6.57855 6.87294 7.28269 8.80025 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.007909 B = 0.004024 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3539.450150 B = 6956.476961 C = 9327.450291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.980 3.020 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.212 3.788 10 O -0.392 6.392 11 C 0.060 3.940 12 C 0.074 3.926 13 N -0.549 5.549 14 C 0.068 3.932 15 C 0.067 3.933 16 N -0.533 5.533 17 C 0.012 3.988 18 C 0.068 3.932 19 O -0.408 6.408 20 C 0.063 3.937 21 C 0.016 3.984 22 C 0.095 3.905 23 C -0.162 4.162 24 C -0.180 4.180 25 C -0.165 4.165 26 H 0.270 0.730 27 H -0.019 1.019 28 H -0.020 1.020 29 H 0.045 0.955 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.017 0.983 36 H 0.091 0.909 37 H 0.021 0.979 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.028 0.972 45 H 0.084 0.916 46 H 0.048 0.952 47 H 0.081 0.919 48 H 0.104 0.896 49 H 0.087 0.913 50 H 0.093 0.907 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.758 -19.834 9.873 23.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.137 3.863 10 O -0.312 6.312 11 C -0.018 4.018 12 C -0.054 4.054 13 N -0.274 5.274 14 C -0.060 4.060 15 C -0.061 4.061 16 N -0.259 5.259 17 C -0.116 4.116 18 C -0.009 4.009 19 O -0.326 6.326 20 C -0.013 4.013 21 C -0.112 4.112 22 C -0.032 4.032 23 C -0.181 4.181 24 C -0.217 4.217 25 C -0.202 4.202 26 H 0.079 0.921 27 H -0.001 1.001 28 H -0.003 1.003 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.109 0.891 37 H 0.040 0.960 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.134 0.866 43 H 0.124 0.876 44 H 0.046 0.954 45 H 0.102 0.898 46 H 0.066 0.934 47 H 0.099 0.901 48 H 0.123 0.877 49 H 0.105 0.895 50 H 0.112 0.888 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.694 -19.608 10.049 23.028 hybrid contribution -0.221 1.188 -0.549 1.327 sum 6.474 -18.420 9.500 21.713 Atomic orbital electron populations 1.70068 1.07721 1.28594 1.50613 1.25931 0.95929 1.03258 0.93944 0.85285 0.78174 0.76933 0.79335 1.18845 1.19834 1.19303 1.21341 0.93946 0.90955 1.52057 0.92299 1.19731 0.88690 0.85108 0.92752 1.87894 1.35599 1.13779 1.93900 1.22575 0.95800 0.84810 0.98572 1.22015 0.97856 0.95533 0.90013 1.61656 1.03462 1.58049 1.04184 1.21952 0.95102 0.97893 0.91073 1.22010 0.95674 0.97047 0.91387 1.62265 1.03070 1.55803 1.04745 1.22857 0.91330 0.95864 1.01551 1.22716 0.96030 1.01385 0.80741 1.87960 1.37307 1.77790 1.29590 1.22824 0.82078 0.96573 0.99834 1.22882 1.00310 0.99998 0.88051 1.21665 0.87061 0.94216 1.00226 1.22214 0.93817 0.99359 1.02719 1.23098 1.04505 1.01593 0.92462 1.23008 0.93496 1.03590 1.00149 0.92107 1.00146 1.00255 0.93711 0.95027 0.90056 0.91211 0.92805 0.92332 0.96481 0.89108 0.96032 0.89460 0.91054 0.87564 0.91249 0.86591 0.87622 0.95385 0.89823 0.93420 0.90105 0.87723 0.89475 0.88821 0.87221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 2 C 0.01 0.46 5.46 84.65 0.46 0.92 16 3 Si 0.98 45.56 29.54 68.60 2.03 47.58 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.55 -33.59 9.43 25.60 0.24 -33.35 16 8 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 9 C 0.21 12.40 5.69 71.24 0.41 12.81 16 10 O -0.39 -19.93 10.26 -148.98 -1.53 -21.46 16 11 C 0.06 2.30 6.12 71.98 0.44 2.74 16 12 C 0.07 2.18 5.23 86.31 0.45 2.63 16 13 N -0.55 -15.95 4.35 -896.23 -3.90 -19.85 16 14 C 0.07 1.75 4.72 86.30 0.41 2.16 16 15 C 0.07 1.67 4.91 86.30 0.42 2.09 16 16 N -0.53 -12.09 4.73 -895.21 -4.23 -16.32 16 17 C 0.01 0.30 5.44 86.31 0.47 0.77 16 18 C 0.07 1.41 7.01 72.01 0.50 1.91 16 19 O -0.41 -9.37 10.83 -148.98 -1.61 -10.99 16 20 C 0.06 1.09 7.01 72.01 0.50 1.59 16 21 C 0.02 0.30 5.65 86.31 0.49 0.79 16 22 C 0.10 2.20 5.11 86.30 0.44 2.64 16 23 C -0.16 -4.08 4.78 -10.79 -0.05 -4.13 16 24 C -0.18 -3.71 10.01 30.62 0.31 -3.40 16 25 C -0.17 -3.18 10.25 30.62 0.31 -2.86 16 26 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 27 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 28 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.03 1.21 6.66 -2.39 -0.02 1.20 16 31 H 0.08 2.46 6.83 -2.39 -0.02 2.45 16 32 H 0.07 1.64 8.00 -2.39 -0.02 1.62 16 33 H 0.05 1.21 8.12 -2.39 -0.02 1.19 16 34 H 0.06 1.72 4.94 -2.39 -0.01 1.71 16 35 H 0.02 0.54 8.12 -2.39 -0.02 0.52 16 36 H 0.09 1.94 6.22 -2.39 -0.01 1.93 16 37 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.09 2.15 6.38 -2.39 -0.02 2.13 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 40 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.11 1.57 8.09 -2.39 -0.02 1.55 16 44 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.08 1.76 6.01 -2.39 -0.01 1.75 16 46 H 0.05 0.94 7.83 -2.38 -0.02 0.92 16 47 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 48 H 0.10 1.82 8.03 -2.39 -0.02 1.80 16 49 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 50 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 51 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -71.12 398.34 -2.28 -73.40 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.87 Total: 17.28 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 5.81 Total: -12.68 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -7.85 Total: -93.14 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -3.14 Total: -32.44 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -71.12 -2.28 -73.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595809580.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.244 kcal (2) G-P(sol) polarization free energy of solvation -71.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds