Wall clock time and date at job start Fri Apr 10 2020 18:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99603 * 2 1 4 4 O 1.20822 * 120.00568 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99759 * 179.97438 * 3 2 1 6 6 H 1.08995 * 110.54041 * 322.17816 * 5 3 2 7 7 C 1.54894 * 110.48539 * 199.56631 * 5 3 2 8 8 C 1.54882 * 102.74907 * 203.37774 * 7 5 3 9 9 C 1.54382 * 104.21617 * 37.92746 * 8 7 5 10 10 C 1.53872 * 106.54286 * 336.42528 * 9 8 7 11 11 H 1.09003 * 110.03035 * 240.65304 * 10 9 8 12 12 N 1.46499 * 110.03392 * 119.26860 * 10 9 8 13 13 C 1.34773 * 119.99644 * 89.75273 * 12 10 9 14 14 O 1.21284 * 120.00265 * 0.02562 * 13 12 10 15 15 C 1.50701 * 120.00079 * 180.02562 * 13 12 10 16 16 H 1.09005 * 109.47218 * 39.99841 * 15 13 12 17 17 N 1.46899 * 109.47547 * 160.00069 * 15 13 12 18 18 C 1.53011 * 109.47087 * 280.00277 * 15 13 12 19 19 C 1.53004 * 109.46816 * 174.99712 * 18 15 13 20 20 C 1.53003 * 109.46589 * 180.02562 * 19 18 15 21 21 C 1.50700 * 109.46971 * 180.02562 * 20 19 18 22 22 H 1.08002 * 119.99966 * 0.02562 * 21 20 19 23 23 C 1.37876 * 120.00073 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99912 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99853 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47314 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47343 * 120.00434 * 25 23 21 28 28 H 1.48505 * 109.47094 * 240.00365 * 25 23 21 29 29 H 1.09009 * 109.46856 * 179.97438 * 1 2 3 30 30 H 1.08988 * 109.47451 * 299.99945 * 1 2 3 31 31 H 1.09004 * 109.46847 * 60.00292 * 1 2 3 32 32 H 1.08995 * 110.75612 * 321.69787 * 7 5 3 33 33 H 1.09003 * 110.75248 * 84.88026 * 7 5 3 34 34 H 1.09005 * 110.48719 * 156.61784 * 8 7 5 35 35 H 1.09001 * 110.49218 * 279.13431 * 8 7 5 36 36 H 1.08993 * 110.06896 * 217.15125 * 9 8 7 37 37 H 1.09001 * 110.04618 * 95.68405 * 9 8 7 38 38 H 0.96994 * 120.00101 * 269.75330 * 12 10 9 39 39 H 1.00901 * 110.99961 * 59.99714 * 17 15 13 40 40 H 1.00897 * 111.00045 * 183.95672 * 17 15 13 41 41 H 1.09000 * 109.46774 * 54.99825 * 18 15 13 42 42 H 1.09001 * 109.46733 * 294.99588 * 18 15 13 43 43 H 1.09001 * 109.46898 * 299.99735 * 19 18 15 44 44 H 1.09000 * 109.46903 * 60.00191 * 19 18 15 45 45 H 1.09001 * 109.46829 * 299.99795 * 20 19 18 46 46 H 1.08998 * 109.47150 * 59.99700 * 20 19 18 47 47 H 0.96994 * 119.99860 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9901 0.4900 0.6268 7 6 4.0358 2.6687 0.4864 8 6 5.4503 2.7880 -0.1331 9 6 5.3113 2.1332 -1.5243 10 6 4.1129 1.1720 -1.4383 11 1 4.4373 0.1516 -1.6423 12 7 3.0797 1.5710 -2.3973 13 6 3.0966 1.0759 -3.6507 14 8 3.9668 0.2998 -3.9846 15 6 2.0342 1.4867 -4.6375 16 1 1.8231 2.5499 -4.5225 17 7 2.5077 1.2265 -6.0035 18 6 0.7587 0.6825 -4.3779 19 6 -0.3572 1.1858 -5.2959 20 6 -1.6328 0.3820 -5.0358 21 6 -2.7317 0.8773 -5.9403 22 1 -2.5394 1.6843 -6.6319 23 6 -3.9824 0.2994 -5.8859 24 7 -4.2164 -0.6836 -5.0442 25 14 -5.3446 0.9138 -7.0066 26 1 -4.8286 2.0196 -7.8528 27 1 -5.8104 -0.1974 -7.8747 28 1 -6.4780 1.4073 -6.1835 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.3800 3.4516 0.1057 33 1 4.0837 2.7024 1.5749 34 1 5.7368 3.8352 -0.2312 35 1 6.1789 2.2493 0.4727 36 1 6.2175 1.5792 -1.7691 37 1 5.1243 2.8966 -2.2795 38 1 2.3836 2.1914 -2.1302 39 1 2.7104 0.2469 -6.1355 40 1 1.8399 1.5528 -6.6860 41 1 0.4569 0.8058 -3.3378 42 1 0.9469 -0.3721 -4.5792 43 1 -0.5453 2.2404 -5.0945 44 1 -0.0553 1.0626 -6.3359 45 1 -1.4449 -0.6727 -5.2368 46 1 -1.9344 0.5056 -3.9957 47 1 -5.0961 -1.0904 -5.0061 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595974734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:33 Heat of formation + Delta-G solvation = -151.828371 kcal Electronic energy + Delta-G solvation = -27140.453981 eV Core-core repulsion = 23321.983188 eV Total energy + Delta-G solvation = -3818.470793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20624 -39.78681 -38.12183 -36.48218 -35.93276 -33.70599 -33.36583 -31.25878 -30.26172 -28.70143 -27.65480 -27.34284 -25.19562 -22.96782 -22.47162 -20.92695 -20.40747 -20.16964 -20.02780 -17.93599 -17.62647 -17.04704 -16.45052 -16.34729 -15.85593 -15.49909 -14.91080 -14.76172 -14.71781 -14.50301 -14.33777 -13.86958 -13.67174 -13.31604 -13.16528 -12.73060 -12.47495 -12.16351 -12.08739 -11.91212 -11.85673 -11.72878 -11.52344 -11.36330 -11.23711 -10.98104 -10.89986 -10.84073 -10.73249 -10.60503 -10.57430 -9.84284 -9.78016 -9.40851 -9.23036 -9.14787 -8.49466 -8.39905 -6.05358 -4.07976 1.93929 2.50534 2.68622 3.03206 3.27537 3.35327 3.39291 3.98543 4.08102 4.41495 4.49422 4.76352 4.79974 4.83433 4.92698 4.94315 5.02018 5.10121 5.15473 5.20700 5.23581 5.28733 5.30793 5.31369 5.49896 5.58583 5.60373 5.75074 5.78876 5.81083 5.94535 5.96820 6.22841 6.24693 6.34327 6.55008 6.71119 6.99729 7.13946 7.43225 7.53064 7.59400 7.60538 7.72627 7.93767 8.23048 8.36020 8.99101 9.56675 11.05915 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016293 B = 0.003325 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.071833 B = 8419.700969 C = 9548.317140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.470 3.530 4 O -0.504 6.504 5 C -0.099 4.099 6 H 0.120 0.880 7 C -0.113 4.113 8 C -0.122 4.122 9 C -0.133 4.133 10 C 0.156 3.844 11 H 0.104 0.896 12 N -0.735 5.735 13 C 0.529 3.471 14 O -0.530 6.530 15 C 0.074 3.926 16 H 0.099 0.901 17 N -0.829 5.829 18 C -0.145 4.145 19 C -0.109 4.109 20 C 0.023 3.977 21 C -0.521 4.521 22 H 0.055 0.945 23 C 0.056 3.944 24 N -0.895 5.895 25 Si 0.892 3.108 26 H -0.272 1.272 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.403 0.597 39 H 0.349 0.651 40 H 0.352 0.648 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.015 0.985 46 H 0.014 0.986 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.058 4.643 12.933 22.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C 0.312 3.688 4 O -0.392 6.392 5 C -0.119 4.119 6 H 0.138 0.862 7 C -0.150 4.150 8 C -0.160 4.160 9 C -0.172 4.172 10 C 0.050 3.950 11 H 0.122 0.878 12 N -0.390 5.390 13 C 0.316 3.684 14 O -0.405 6.405 15 C -0.041 4.041 16 H 0.116 0.884 17 N -0.361 5.361 18 C -0.185 4.185 19 C -0.147 4.147 20 C -0.014 4.014 21 C -0.559 4.559 22 H 0.074 0.926 23 C -0.145 4.145 24 N -0.535 5.535 25 Si 0.719 3.281 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.239 0.761 39 H 0.163 0.837 40 H 0.167 0.833 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 18.928 4.722 12.903 23.389 hybrid contribution -2.390 -0.068 -0.404 2.425 sum 16.537 4.654 12.499 21.245 Atomic orbital electron populations 1.23395 0.75253 1.04402 1.03006 1.86507 1.24175 1.32939 1.83374 1.23394 0.91553 0.81780 0.72036 1.90688 1.67016 1.36254 1.45240 1.22337 0.88124 1.02177 0.99291 0.86162 1.22569 0.96997 0.94376 1.01066 1.22375 0.96304 1.01471 0.95808 1.22642 0.97845 0.98845 0.97886 1.21467 0.87814 1.00778 0.84909 0.87779 1.46297 1.31104 1.49464 1.12166 1.20726 0.85785 0.79832 0.82098 1.90651 1.37711 1.34496 1.77672 1.21440 0.91677 1.01364 0.89593 0.88357 1.58687 1.49900 1.25537 1.01981 1.22393 0.94563 0.99917 1.01588 1.21659 0.95665 1.00161 0.97183 1.19072 0.90363 0.94995 0.96978 1.21282 0.95525 1.18241 1.20882 0.92627 1.25028 0.98753 0.95017 0.95670 1.69969 1.22325 1.24506 1.36652 0.86543 0.82041 0.78780 0.80692 1.19703 1.20995 1.20997 0.87697 0.91835 0.91044 0.89397 0.90441 0.90741 0.90984 0.90401 0.90503 0.76105 0.83730 0.83323 0.92018 0.91681 0.93047 0.93243 0.96701 0.96724 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.44 16 2 O -0.35 -4.34 10.57 -39.25 -0.41 -4.76 16 3 C 0.47 5.47 5.71 36.01 0.21 5.68 16 4 O -0.50 -6.89 14.69 -18.75 -0.28 -7.17 16 5 C -0.10 -0.86 3.33 -90.11 -0.30 -1.16 16 6 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 7 C -0.11 -0.83 6.13 -24.74 -0.15 -0.98 16 8 C -0.12 -0.76 6.83 -25.01 -0.17 -0.93 16 9 C -0.13 -1.12 6.60 -25.55 -0.17 -1.29 16 10 C 0.16 1.56 3.14 -66.81 -0.21 1.35 16 11 H 0.10 1.15 7.50 -51.93 -0.39 0.76 16 12 N -0.74 -8.88 4.29 -52.72 -0.23 -9.11 16 13 C 0.53 7.77 7.08 -10.99 -0.08 7.69 16 14 O -0.53 -9.19 15.87 5.55 0.09 -9.10 16 15 C 0.07 1.08 3.21 -68.86 -0.22 0.85 16 16 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 17 N -0.83 -11.86 8.94 -5.65 -0.05 -11.91 16 18 C -0.14 -2.38 4.84 -26.72 -0.13 -2.51 16 19 C -0.11 -2.11 4.92 -26.73 -0.13 -2.24 16 20 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 21 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 22 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 23 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 24 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 25 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 30 H 0.06 0.66 8.13 -51.94 -0.42 0.24 16 31 H 0.07 0.93 8.13 -51.93 -0.42 0.50 16 32 H 0.09 0.78 7.26 -51.93 -0.38 0.40 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 38 H 0.40 4.84 6.93 -40.82 -0.28 4.55 16 39 H 0.35 5.13 8.58 -39.29 -0.34 4.79 16 40 H 0.35 4.73 7.55 -39.29 -0.30 4.43 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.05 0.92 6.87 -51.93 -0.36 0.57 16 45 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 383.02 15.07 5.77 5.77 Total: -1.00 -32.82 383.02 -8.14 -40.96 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -7.91 Total: 9.70 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -0.84 Total: -4.99 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.46 Total: -46.87 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.60 Total: -21.03 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.82 -8.14 -40.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595974734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.868 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds