Wall clock time and date at job start Fri Apr 10 2020 18:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99603 * 2 1 4 4 O 1.20822 * 120.00568 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99759 * 179.97438 * 3 2 1 6 6 H 1.08995 * 110.54041 * 322.17816 * 5 3 2 7 7 C 1.54894 * 110.48539 * 199.56631 * 5 3 2 8 8 C 1.54882 * 102.74907 * 203.37774 * 7 5 3 9 9 C 1.54382 * 104.21617 * 37.92746 * 8 7 5 10 10 C 1.53872 * 106.54286 * 336.42528 * 9 8 7 11 11 H 1.09003 * 110.03035 * 240.65304 * 10 9 8 12 12 N 1.46499 * 110.03392 * 119.26860 * 10 9 8 13 13 C 1.34773 * 119.99644 * 89.75273 * 12 10 9 14 14 O 1.21284 * 120.00265 * 0.02562 * 13 12 10 15 15 C 1.50701 * 120.00079 * 180.02562 * 13 12 10 16 16 H 1.09005 * 109.47218 * 39.99841 * 15 13 12 17 17 N 1.46899 * 109.47547 * 160.00069 * 15 13 12 18 18 C 1.53011 * 109.47087 * 280.00277 * 15 13 12 19 19 C 1.53004 * 109.46816 * 174.99712 * 18 15 13 20 20 C 1.53003 * 109.46589 * 180.02562 * 19 18 15 21 21 C 1.50700 * 109.46971 * 180.02562 * 20 19 18 22 22 H 1.08002 * 119.99966 * 0.02562 * 21 20 19 23 23 C 1.37876 * 120.00073 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99912 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99853 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47314 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47343 * 120.00434 * 25 23 21 28 28 H 1.48505 * 109.47094 * 240.00365 * 25 23 21 29 29 H 1.09009 * 109.46856 * 179.97438 * 1 2 3 30 30 H 1.08988 * 109.47451 * 299.99945 * 1 2 3 31 31 H 1.09004 * 109.46847 * 60.00292 * 1 2 3 32 32 H 1.08995 * 110.75612 * 321.69787 * 7 5 3 33 33 H 1.09003 * 110.75248 * 84.88026 * 7 5 3 34 34 H 1.09005 * 110.48719 * 156.61784 * 8 7 5 35 35 H 1.09001 * 110.49218 * 279.13431 * 8 7 5 36 36 H 1.08993 * 110.06896 * 217.15125 * 9 8 7 37 37 H 1.09001 * 110.04618 * 95.68405 * 9 8 7 38 38 H 0.96994 * 120.00101 * 269.75330 * 12 10 9 39 39 H 1.00901 * 110.99961 * 59.99714 * 17 15 13 40 40 H 1.00897 * 111.00045 * 183.95672 * 17 15 13 41 41 H 1.09000 * 109.46774 * 54.99825 * 18 15 13 42 42 H 1.09001 * 109.46733 * 294.99588 * 18 15 13 43 43 H 1.09001 * 109.46898 * 299.99735 * 19 18 15 44 44 H 1.09000 * 109.46903 * 60.00191 * 19 18 15 45 45 H 1.09001 * 109.46829 * 299.99795 * 20 19 18 46 46 H 1.08998 * 109.47150 * 59.99700 * 20 19 18 47 47 H 0.96994 * 119.99860 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9901 0.4900 0.6268 7 6 4.0358 2.6687 0.4864 8 6 5.4503 2.7880 -0.1331 9 6 5.3113 2.1332 -1.5243 10 6 4.1129 1.1720 -1.4383 11 1 4.4373 0.1516 -1.6423 12 7 3.0797 1.5710 -2.3973 13 6 3.0966 1.0759 -3.6507 14 8 3.9668 0.2998 -3.9846 15 6 2.0342 1.4867 -4.6375 16 1 1.8231 2.5499 -4.5225 17 7 2.5077 1.2265 -6.0035 18 6 0.7587 0.6825 -4.3779 19 6 -0.3572 1.1858 -5.2959 20 6 -1.6328 0.3820 -5.0358 21 6 -2.7317 0.8773 -5.9403 22 1 -2.5394 1.6843 -6.6319 23 6 -3.9824 0.2994 -5.8859 24 7 -4.2164 -0.6836 -5.0442 25 14 -5.3446 0.9138 -7.0066 26 1 -4.8286 2.0196 -7.8528 27 1 -5.8104 -0.1974 -7.8747 28 1 -6.4780 1.4073 -6.1835 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.3800 3.4516 0.1057 33 1 4.0837 2.7024 1.5749 34 1 5.7368 3.8352 -0.2312 35 1 6.1789 2.2493 0.4727 36 1 6.2175 1.5792 -1.7691 37 1 5.1243 2.8966 -2.2795 38 1 2.3836 2.1914 -2.1302 39 1 2.7104 0.2469 -6.1355 40 1 1.8399 1.5528 -6.6860 41 1 0.4569 0.8058 -3.3378 42 1 0.9469 -0.3721 -4.5792 43 1 -0.5453 2.2404 -5.0945 44 1 -0.0553 1.0626 -6.3359 45 1 -1.4449 -0.6727 -5.2368 46 1 -1.9344 0.5056 -3.9957 47 1 -5.0961 -1.0904 -5.0061 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595974734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:33 Heat of formation + Delta-G solvation = -173.830549 kcal Electronic energy + Delta-G solvation = -27141.408067 eV Core-core repulsion = 23321.983188 eV Total energy + Delta-G solvation = -3819.424879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.13054 -40.89629 -39.00372 -37.52402 -37.28364 -35.29513 -34.67346 -33.03061 -31.00335 -29.78823 -28.91674 -28.35277 -26.71598 -24.42444 -23.53564 -22.05167 -21.54220 -21.36773 -20.90194 -18.89040 -18.72723 -18.48368 -17.99030 -17.43939 -16.79738 -16.55637 -16.44067 -16.04774 -15.90913 -15.80675 -15.31021 -15.05576 -14.59084 -14.49074 -14.32830 -14.19634 -13.78093 -13.67564 -13.45107 -13.06076 -12.96932 -12.63362 -12.58911 -12.49287 -12.41706 -12.39138 -12.14792 -12.04579 -11.86822 -11.61582 -11.56280 -11.49044 -11.44735 -11.27366 -10.81908 -10.58608 -10.23664 -9.72594 -8.22472 -6.33475 1.01287 1.38402 1.39096 1.50455 1.52244 1.64309 2.02449 2.39047 3.11056 3.28392 3.36485 3.60487 3.64448 3.75816 3.90944 4.00729 4.11083 4.20059 4.21652 4.24660 4.33644 4.34149 4.38655 4.44537 4.51261 4.65822 4.68060 4.71380 4.87819 4.94328 5.03698 5.10488 5.16572 5.18397 5.21608 5.31800 5.35355 5.47927 5.48649 5.68677 5.81778 5.98545 6.21358 6.34013 6.45429 6.59710 6.83667 7.09809 7.36189 8.89348 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016293 B = 0.003325 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.071833 B = 8419.700969 C = 9548.317140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.465 3.535 4 O -0.528 6.528 5 C -0.093 4.093 6 H 0.148 0.852 7 C -0.109 4.109 8 C -0.111 4.111 9 C -0.130 4.130 10 C 0.149 3.851 11 H 0.094 0.906 12 N -0.727 5.727 13 C 0.529 3.471 14 O -0.559 6.559 15 C 0.081 3.919 16 H 0.114 0.886 17 N -0.827 5.827 18 C -0.131 4.131 19 C -0.095 4.095 20 C 0.026 3.974 21 C -0.542 4.542 22 H 0.062 0.938 23 C -0.001 4.001 24 N -0.933 5.933 25 Si 0.963 3.037 26 H -0.261 1.261 27 H -0.279 1.279 28 H -0.279 1.279 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.404 0.596 39 H 0.347 0.653 40 H 0.357 0.643 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.059 0.941 45 H -0.013 1.013 46 H -0.010 1.010 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.068 5.830 13.244 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.278 6.278 3 C 0.310 3.690 4 O -0.417 6.417 5 C -0.112 4.112 6 H 0.165 0.835 7 C -0.147 4.147 8 C -0.148 4.148 9 C -0.169 4.169 10 C 0.044 3.956 11 H 0.112 0.888 12 N -0.380 5.380 13 C 0.315 3.685 14 O -0.436 6.436 15 C -0.034 4.034 16 H 0.131 0.869 17 N -0.360 5.360 18 C -0.171 4.171 19 C -0.133 4.133 20 C -0.011 4.011 21 C -0.580 4.580 22 H 0.080 0.920 23 C -0.199 4.199 24 N -0.573 5.573 25 Si 0.788 3.212 26 H -0.185 1.185 27 H -0.205 1.205 28 H -0.204 1.204 29 H 0.138 0.862 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.240 0.760 39 H 0.160 0.840 40 H 0.173 0.827 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.006 0.994 46 H 0.008 0.992 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 19.952 5.930 13.231 24.664 hybrid contribution -2.717 -0.465 -0.463 2.795 sum 17.234 5.465 12.768 22.134 Atomic orbital electron populations 1.23453 0.75237 1.05265 1.02395 1.86519 1.24379 1.33515 1.83338 1.24042 0.92705 0.81185 0.71111 1.90676 1.67819 1.36878 1.46321 1.22493 0.85823 1.04146 0.98776 0.83476 1.22581 0.97177 0.92718 1.02184 1.22352 0.95989 1.02136 0.94324 1.22600 0.96998 0.98168 0.99108 1.21687 0.87990 1.00776 0.85102 0.88783 1.46290 1.31360 1.48671 1.11722 1.20692 0.85448 0.79563 0.82777 1.90638 1.38866 1.35835 1.78299 1.21379 0.90479 1.01673 0.89877 0.86856 1.58700 1.49913 1.25422 1.01937 1.22196 0.94797 0.99472 1.00635 1.21442 0.93850 0.99524 0.98448 1.18977 0.92753 0.94252 0.95121 1.21732 0.96511 1.18432 1.21298 0.91988 1.25974 1.01549 0.95130 0.97213 1.70097 1.23132 1.25770 1.38298 0.85423 0.78622 0.78501 0.78662 1.18454 1.20501 1.20448 0.86213 0.90859 0.93203 0.91117 0.88619 0.89829 0.88840 0.89910 0.91787 0.75977 0.83962 0.82741 0.92340 0.92867 0.92268 0.92226 0.99440 0.99160 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.89 16 2 O -0.36 -8.79 10.57 -51.40 -0.54 -9.34 16 3 C 0.47 10.58 5.71 71.24 0.41 10.98 16 4 O -0.53 -14.36 14.69 21.98 0.32 -14.04 16 5 C -0.09 -1.45 3.33 -10.46 -0.03 -1.48 16 6 H 0.15 1.52 8.14 -2.39 -0.02 1.51 16 7 C -0.11 -1.35 6.13 31.88 0.20 -1.16 16 8 C -0.11 -1.06 6.83 31.71 0.22 -0.85 16 9 C -0.13 -1.96 6.60 31.36 0.21 -1.75 16 10 C 0.15 2.83 3.14 45.72 0.14 2.98 16 11 H 0.09 2.01 7.50 -2.39 -0.02 2.00 16 12 N -0.73 -17.25 4.29 -439.10 -1.88 -19.14 16 13 C 0.53 15.35 7.08 87.66 0.62 15.97 16 14 O -0.56 -19.27 15.87 -3.04 -0.05 -19.32 16 15 C 0.08 2.30 3.21 44.17 0.14 2.44 16 16 H 0.11 2.89 8.14 -2.38 -0.02 2.87 16 17 N -0.83 -22.99 8.94 -171.78 -1.53 -24.53 16 18 C -0.13 -4.35 4.84 30.60 0.15 -4.20 16 19 C -0.09 -3.68 4.92 30.60 0.15 -3.53 16 20 C 0.03 1.35 4.97 29.85 0.15 1.50 16 21 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 22 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 23 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 24 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16 25 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 26 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 27 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 28 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 29 H 0.12 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.07 1.54 8.13 -2.39 -0.02 1.52 16 31 H 0.05 1.36 8.13 -2.38 -0.02 1.34 16 32 H 0.07 1.16 7.26 -2.39 -0.02 1.14 16 33 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.15 7.92 -2.39 -0.02 1.13 16 38 H 0.40 9.58 6.93 -92.71 -0.64 8.94 16 39 H 0.35 10.07 8.58 -89.69 -0.77 9.30 16 40 H 0.36 9.17 7.55 -89.70 -0.68 8.49 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.06 2.19 6.87 -2.39 -0.02 2.17 16 45 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 46 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 47 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -71.20 383.02 1.75 -69.44 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: -1.10 Total: 34.03 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 4.24 Total: -6.99 kcal Atomic # 7 Polarization: -96.64 SS G_CDS: -3.13 Total: -99.78 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -0.27 Total: -42.70 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -71.20 1.75 -69.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595974734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.388 kcal (2) G-P(sol) polarization free energy of solvation -71.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds