Wall clock time and date at job start Fri Apr 10 2020 18:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47636 * 2 1 4 4 C 1.52996 * 109.47345 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47345 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47080 * 54.99155 * 5 4 3 7 7 N 1.46499 * 109.46493 * 294.99555 * 5 4 3 8 8 C 1.34773 * 120.00075 * 299.99689 * 7 5 4 9 9 N 1.34780 * 119.99880 * 180.02562 * 8 7 5 10 10 O 1.21580 * 120.00246 * 0.02562 * 8 7 5 11 11 C 1.50700 * 109.47277 * 174.99661 * 5 4 3 12 12 O 1.21283 * 119.99803 * 99.99659 * 11 5 4 13 13 N 1.34777 * 119.99675 * 280.27534 * 11 5 4 14 14 C 1.47423 * 125.64829 * 359.41380 * 13 11 5 15 15 C 1.55137 * 104.71983 * 155.82193 * 14 13 11 16 16 C 1.55161 * 101.48526 * 37.29517 * 15 14 13 17 17 H 1.09000 * 110.87256 * 82.76436 * 16 15 14 18 18 N 1.46499 * 110.71602 * 205.97085 * 16 15 14 19 19 C 1.36933 * 119.99883 * 268.51730 * 18 16 15 20 20 H 1.08003 * 120.00020 * 0.02562 * 19 18 16 21 21 C 1.38812 * 119.99873 * 180.02562 * 19 18 16 22 22 N 1.31624 * 120.00068 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 120.00234 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47444 * 89.99779 * 23 21 19 25 25 H 1.48500 * 109.47527 * 209.99923 * 23 21 19 26 26 H 1.48499 * 109.47058 * 330.00047 * 23 21 19 27 27 C 1.47019 * 125.64379 * 179.72980 * 13 11 5 28 28 H 1.08992 * 109.47301 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46502 * 300.00440 * 1 2 3 30 30 H 1.08999 * 109.46949 * 59.99475 * 1 2 3 31 31 H 1.09007 * 109.47163 * 239.99647 * 2 1 3 32 32 H 1.09007 * 109.47258 * 120.00405 * 2 1 3 33 33 H 1.08994 * 109.47048 * 59.99768 * 3 2 1 34 34 H 1.09008 * 109.46752 * 299.99812 * 3 2 1 35 35 H 1.09000 * 109.47628 * 59.99145 * 4 3 2 36 36 H 1.09003 * 109.46966 * 299.99492 * 4 3 2 37 37 H 0.97003 * 119.99657 * 120.00039 * 7 5 4 38 38 H 0.97001 * 120.00339 * 0.02562 * 9 8 7 39 39 H 0.96999 * 120.00158 * 179.97438 * 9 8 7 40 40 H 1.09007 * 110.36652 * 274.74673 * 14 13 11 41 41 H 1.08993 * 110.36828 * 37.07553 * 14 13 11 42 42 H 1.08994 * 111.19025 * 279.18980 * 15 14 13 43 43 H 1.08997 * 110.90402 * 155.27666 * 15 14 13 44 44 H 0.97001 * 120.00068 * 88.52703 * 18 16 15 45 45 H 0.96993 * 120.00141 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.88210 * 300.43359 * 27 13 11 47 47 H 1.08996 * 109.88947 * 61.60157 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0802 2.8848 0.0000 6 1 3.6459 3.4234 0.8422 7 7 3.6922 3.5404 -1.2513 8 6 4.1163 3.0456 -2.4310 9 7 3.7597 3.6491 -3.5822 10 8 4.8205 2.0549 -2.4568 11 6 5.5822 2.8865 0.1233 12 8 6.2713 3.0399 -0.8628 13 7 6.1595 2.7118 1.3285 14 6 5.4451 2.5214 2.6040 15 6 6.4539 1.7710 3.5127 16 6 7.7942 2.4356 3.1011 17 1 7.9406 3.3760 3.6325 18 7 8.9181 1.5268 3.3399 19 6 9.5829 1.5598 4.5366 20 1 9.2783 2.2555 5.3046 21 6 10.6482 0.6991 4.7627 22 7 11.2869 0.7304 5.9132 23 14 11.1755 -0.5036 3.4343 24 1 12.1976 0.1343 2.5663 25 1 11.7509 -1.7181 4.0661 26 1 9.9970 -0.8833 2.6144 27 6 7.6060 2.6861 1.5899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6768 1.9563 -0.8901 35 1 3.9331 0.9286 -0.8907 36 1 3.9337 0.9285 0.8892 37 1 3.1301 4.3307 -1.2308 38 1 3.1982 4.4398 -3.5617 39 1 4.0652 3.2932 -4.4313 40 1 5.1831 3.4857 3.0396 41 1 4.5507 1.9175 2.4513 42 1 6.4635 0.7034 3.2930 43 1 6.2364 1.9496 4.5657 44 1 9.1915 0.9019 2.6503 45 1 12.0315 0.1293 6.0711 46 1 8.0715 1.8818 1.0201 47 1 8.0496 3.6429 1.3148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188361207.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:39 Heat of formation + Delta-G solvation = -54.880698 kcal Electronic energy + Delta-G solvation = -27064.366735 eV Core-core repulsion = 23282.392660 eV Total energy + Delta-G solvation = -3781.974075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70347 -39.18309 -37.26333 -36.34452 -34.33169 -34.21590 -33.61203 -31.67256 -30.66652 -29.75338 -28.37405 -26.64601 -23.74429 -22.92101 -22.57939 -21.64433 -20.83273 -20.12993 -19.06879 -18.74458 -17.77049 -17.34768 -16.66009 -16.17516 -15.83171 -15.33578 -14.92946 -14.51921 -14.42832 -14.25161 -14.01163 -13.92611 -13.63673 -13.26615 -13.12695 -12.87605 -12.60762 -12.47401 -12.01441 -11.92387 -11.81770 -11.51442 -11.38512 -11.28915 -11.09965 -10.88421 -10.81040 -10.70721 -10.47162 -10.17427 -10.08199 -9.82455 -9.64984 -9.63326 -8.98125 -8.91868 -8.37442 -7.34050 -5.81589 -3.18708 2.57936 2.85232 3.14684 3.38272 3.41447 3.42970 3.46613 4.30655 4.42275 4.56761 4.64040 4.68181 4.80592 4.87616 4.95969 5.08103 5.14718 5.21738 5.23935 5.46112 5.47250 5.49289 5.54510 5.62298 5.67089 5.69145 5.82924 5.86705 5.90273 5.97205 6.03879 6.18122 6.20225 6.28374 6.30899 6.53095 6.53966 6.56164 6.80516 6.82891 7.73780 7.85913 7.92713 8.37134 8.38753 8.68702 9.14009 9.86815 10.05233 11.36155 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015998 B = 0.003274 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.755294 B = 8549.315666 C = 9277.951937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.137 4.137 5 C 0.160 3.840 6 H 0.107 0.893 7 N -0.733 5.733 8 C 0.710 3.290 9 N -0.872 5.872 10 O -0.561 6.561 11 C 0.511 3.489 12 O -0.511 6.511 13 N -0.616 5.616 14 C 0.094 3.906 15 C -0.153 4.153 16 C 0.177 3.823 17 H 0.075 0.925 18 N -0.740 5.740 19 C -0.249 4.249 20 H 0.092 0.908 21 C 0.009 3.991 22 N -0.931 5.931 23 Si 0.882 3.118 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.276 1.276 27 C 0.100 3.900 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.397 0.603 38 H 0.392 0.608 39 H 0.413 0.587 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.364 0.636 45 H 0.261 0.739 46 H 0.065 0.935 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.165 6.638 -13.745 29.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.148 4.148 4 C -0.176 4.176 5 C 0.051 3.949 6 H 0.125 0.875 7 N -0.390 5.390 8 C 0.408 3.592 9 N -0.441 5.441 10 O -0.435 6.435 11 C 0.297 3.703 12 O -0.385 6.385 13 N -0.352 5.352 14 C -0.029 4.029 15 C -0.194 4.194 16 C 0.066 3.934 17 H 0.093 0.907 18 N -0.381 5.381 19 C -0.378 4.378 20 H 0.110 0.890 21 C -0.188 4.188 22 N -0.578 5.578 23 Si 0.712 3.288 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.202 1.202 27 C -0.024 4.024 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.231 0.769 38 H 0.219 0.781 39 H 0.244 0.756 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.197 0.803 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.082 5.904 -13.974 28.462 hybrid contribution 0.075 -0.241 -1.083 1.112 sum -24.007 5.663 -15.058 28.899 Atomic orbital electron populations 1.21761 0.95959 1.01537 1.01571 1.21523 0.95643 0.96857 1.02338 1.21537 0.94475 0.97017 1.01783 1.22042 0.95940 0.94490 1.05090 1.20643 0.92001 0.96031 0.86268 0.87547 1.44690 1.56672 1.33370 1.04262 1.15840 0.79592 0.83237 0.80510 1.42973 1.58945 1.34392 1.07785 1.90983 1.39867 1.26924 1.85760 1.20508 0.90390 0.77549 0.81895 1.90756 1.64375 1.47714 1.35621 1.48463 1.07977 1.72085 1.06676 1.22520 0.96222 1.00021 0.84181 1.23557 0.96391 1.00454 0.99037 1.21162 0.87326 0.94068 0.90867 0.90689 1.42730 1.35885 1.42483 1.17042 1.19041 1.09564 1.17747 0.91468 0.88977 1.24659 0.98051 0.99356 0.96689 1.69695 1.24093 1.41047 1.22976 0.86588 0.78673 0.81570 0.81939 1.20915 1.21620 1.20227 1.22299 0.80209 1.01741 0.98136 0.92851 0.92770 0.92988 0.92019 0.91811 0.92056 0.92065 0.88640 0.90481 0.76898 0.78127 0.75564 0.91483 0.91120 0.90726 0.90124 0.80299 0.92938 0.91645 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.65 16 2 C -0.13 -1.02 5.93 -26.73 -0.16 -1.17 16 3 C -0.11 -0.87 5.10 -26.73 -0.14 -1.00 16 4 C -0.14 -1.46 4.39 -26.73 -0.12 -1.58 16 5 C 0.16 1.71 2.29 -69.08 -0.16 1.56 16 6 H 0.11 0.80 7.67 -51.93 -0.40 0.40 16 7 N -0.73 -6.90 4.66 -59.82 -0.28 -7.18 16 8 C 0.71 8.78 7.59 -86.92 -0.66 8.12 16 9 N -0.87 -6.76 8.88 27.63 0.25 -6.51 16 10 O -0.56 -9.97 13.03 -18.19 -0.24 -10.20 16 11 C 0.51 7.99 6.84 -10.98 -0.08 7.91 16 12 O -0.51 -10.30 14.01 -17.93 -0.25 -10.55 16 13 N -0.62 -9.24 3.32 -170.38 -0.57 -9.81 16 14 C 0.09 1.12 6.40 -2.41 -0.02 1.10 16 15 C -0.15 -2.35 6.78 -24.46 -0.17 -2.51 16 16 C 0.18 3.26 3.61 -66.09 -0.24 3.02 16 17 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 18 N -0.74 -17.18 5.03 -51.65 -0.26 -17.44 16 19 C -0.25 -6.82 10.44 -15.06 -0.16 -6.98 16 20 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 21 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 22 N -0.93 -28.89 13.97 55.49 0.78 -28.11 16 23 Si 0.88 22.25 27.74 -169.99 -4.71 17.54 16 24 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 26 H -0.28 -6.65 6.52 56.52 0.37 -6.29 16 27 C 0.10 1.75 6.62 -3.06 -0.02 1.73 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.48 7.75 -51.92 -0.40 0.08 16 35 H 0.10 1.36 6.04 -51.93 -0.31 1.05 16 36 H 0.08 0.82 6.60 -51.93 -0.34 0.48 16 37 H 0.40 2.19 8.84 -40.82 -0.36 1.83 16 38 H 0.39 1.59 8.84 -40.82 -0.36 1.23 16 39 H 0.41 3.00 8.93 -40.82 -0.36 2.64 16 40 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 41 H 0.07 0.69 6.05 -51.93 -0.31 0.37 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.36 8.55 5.42 -40.82 -0.22 8.33 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 46 H 0.07 1.27 7.72 -51.93 -0.40 0.87 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 372.52 15.07 5.61 5.61 Total: -1.00 -37.58 372.52 -9.02 -46.60 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -7.72 Total: 10.35 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -1.63 Total: 9.70 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -0.08 Total: -69.05 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.49 Total: -20.76 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.58 -9.02 -46.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188361207.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.282 kcal (2) G-P(sol) polarization free energy of solvation -37.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds