Wall clock time and date at job start Fri Apr 10 2020 18:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53009 * 109.47113 * 180.02562 * 3 2 1 5 5 C 1.50704 * 110.01266 * 58.60827 * 4 3 2 6 6 O 1.21275 * 119.99513 * 120.70566 * 5 4 3 7 7 N 1.34775 * 119.99792 * 300.69872 * 5 4 3 8 8 C 1.46500 * 119.99622 * 180.02562 * 7 5 4 9 9 H 1.09001 * 110.88700 * 31.11853 * 8 7 5 10 10 C 1.54916 * 111.00353 * 267.19863 * 8 7 5 11 11 N 1.47423 * 104.82834 * 204.91639 * 10 8 7 12 12 C 1.36940 * 125.64378 * 204.10635 * 11 10 8 13 13 H 1.07997 * 120.00055 * 359.97438 * 12 11 10 14 14 C 1.38810 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31619 * 120.00139 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00273 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46933 * 59.99714 * 16 14 12 18 18 H 1.48498 * 109.47391 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46979 * 300.00047 * 16 14 12 20 20 C 1.47016 * 108.70852 * 24.12763 * 11 10 8 21 21 C 1.54332 * 107.26971 * 358.93818 * 20 11 10 22 22 H 1.09006 * 110.86812 * 96.24085 * 21 20 11 23 23 O 1.42895 * 110.72065 * 219.44250 * 21 20 11 24 24 C 1.54266 * 110.02811 * 297.16790 * 4 3 2 25 25 C 1.54896 * 104.19220 * 217.10449 * 24 4 3 26 26 C 1.54891 * 102.74702 * 37.94203 * 25 24 4 27 27 C 1.53875 * 110.03148 * 179.97438 * 4 3 2 28 28 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 29 29 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 30 30 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 32 32 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 33 33 H 0.96991 * 120.00305 * 0.02562 * 7 5 4 34 34 H 1.09000 * 110.36595 * 323.75178 * 10 8 7 35 35 H 1.08997 * 110.36801 * 86.07893 * 10 8 7 36 36 H 0.97002 * 120.00664 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.88659 * 239.52255 * 20 11 10 38 38 H 1.09000 * 109.88402 * 118.35408 * 20 11 10 39 39 H 0.96698 * 114.00497 * 293.52259 * 23 21 20 40 40 H 1.08997 * 110.48866 * 335.77917 * 24 4 3 41 41 H 1.08996 * 110.48867 * 98.42786 * 24 4 3 42 42 H 1.09002 * 110.75313 * 279.62711 * 25 24 4 43 43 H 1.08994 * 110.91189 * 156.32824 * 25 24 4 44 44 H 1.08998 * 110.48278 * 203.37937 * 26 25 24 45 45 H 1.08998 * 110.59903 * 80.79685 * 26 25 24 46 46 H 1.08999 * 110.03236 * 238.56857 * 27 4 3 47 47 H 1.08995 * 110.03064 * 359.95396 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 6 3.9909 0.4090 -1.2097 6 8 4.7448 0.9210 -2.0100 7 7 3.5606 -0.8537 -1.4016 8 6 4.0038 -1.6080 -2.5766 9 1 5.0072 -1.3059 -2.8766 10 6 3.0022 -1.4503 -3.7479 11 7 3.1951 -2.6559 -4.5742 12 6 2.9025 -2.7647 -5.9075 13 1 2.4927 -1.9199 -6.4411 14 6 3.1314 -3.9613 -6.5729 15 7 3.6303 -4.9910 -5.9224 16 14 2.7316 -4.1100 -8.3915 17 1 3.5273 -3.1163 -9.1562 18 1 3.0659 -5.4784 -8.8616 19 1 1.2843 -3.8534 -8.6028 20 6 3.7532 -3.7221 -3.7296 21 6 3.9382 -3.1357 -2.3141 22 1 3.0879 -3.3815 -1.6778 23 8 5.1562 -3.6011 -1.7293 24 6 4.0105 0.4831 1.2885 25 6 5.3275 1.2118 1.6543 26 6 5.0163 2.6843 1.2884 27 6 4.1750 2.5843 -0.0013 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 2.9575 -1.2630 -0.7617 34 1 1.9805 -1.4087 -3.3703 35 1 3.2311 -0.5544 -4.3248 36 1 3.7907 -5.8271 -6.3874 37 1 4.7161 -4.0436 -4.1264 38 1 3.0641 -4.5659 -3.6942 39 1 5.1666 -4.5503 -1.5453 40 1 3.2740 0.6049 2.0827 41 1 4.1989 -0.5738 1.1004 42 1 6.1572 0.8326 1.0577 43 1 5.5429 1.1153 2.7183 44 1 5.9388 3.2337 1.1003 45 1 4.4431 3.1637 2.0820 46 1 4.8155 2.7018 -0.8754 47 1 3.3987 3.3495 -0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193584254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:55 Heat of formation + Delta-G solvation = -110.554782 kcal Electronic energy + Delta-G solvation = -27939.363517 eV Core-core repulsion = 24122.682481 eV Total energy + Delta-G solvation = -3816.681036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.53681 -38.39355 -37.60123 -36.71197 -34.99005 -33.89404 -31.75843 -30.84321 -28.91984 -28.19545 -27.02855 -26.73019 -24.62913 -24.30478 -22.21792 -20.84237 -20.42331 -20.09987 -19.10121 -17.34812 -16.88851 -16.73494 -16.28567 -16.04837 -15.66168 -15.57218 -15.01194 -14.53497 -14.22212 -14.12904 -13.93328 -13.45838 -13.32490 -13.09361 -12.62740 -12.55670 -12.30326 -11.99160 -11.79907 -11.54052 -11.41636 -11.27410 -11.19654 -11.18306 -11.09545 -10.90416 -10.82038 -10.76916 -10.64480 -10.15577 -9.92316 -9.82014 -9.78312 -9.52262 -9.17931 -8.68676 -8.50512 -6.86313 -5.72146 -3.06405 2.89603 3.38951 3.42369 3.46011 3.47427 3.57321 4.37354 4.42945 4.49382 4.67069 4.73071 4.95102 5.00957 5.07097 5.18360 5.24822 5.29726 5.32375 5.32941 5.37537 5.49035 5.53513 5.56930 5.62999 5.68325 5.74975 5.77623 5.79502 5.89652 5.95016 6.08893 6.10523 6.18905 6.24563 6.30423 6.65304 6.71694 6.89560 7.05504 7.38612 7.51446 7.76046 7.96755 8.19050 8.22189 8.62180 9.19318 9.79543 10.43540 11.39491 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.019373 B = 0.003635 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.928296 B = 7701.964558 C = 7965.495731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.077 3.923 4 C -0.081 4.081 5 C 0.527 3.473 6 O -0.544 6.544 7 N -0.700 5.700 8 C 0.137 3.863 9 H 0.102 0.898 10 C 0.132 3.868 11 N -0.600 5.600 12 C -0.228 4.228 13 H 0.079 0.921 14 C -0.007 4.007 15 N -0.924 5.924 16 Si 0.915 3.085 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.285 1.285 20 C 0.155 3.845 21 C 0.069 3.931 22 H 0.056 0.944 23 O -0.563 6.563 24 C -0.105 4.105 25 C -0.127 4.127 26 C -0.121 4.121 27 C -0.113 4.113 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.405 0.595 34 H 0.024 0.976 35 H 0.047 0.953 36 H 0.253 0.747 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.375 0.625 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.096 0.904 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 11.019 18.785 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C 0.000 4.000 4 C -0.084 4.084 5 C 0.312 3.688 6 O -0.422 6.422 7 N -0.352 5.352 8 C 0.032 3.968 9 H 0.120 0.880 10 C 0.004 3.996 11 N -0.328 5.328 12 C -0.356 4.356 13 H 0.097 0.903 14 C -0.203 4.203 15 N -0.572 5.572 16 Si 0.745 3.255 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.212 1.212 20 C 0.029 3.971 21 C 0.009 3.991 22 H 0.074 0.926 23 O -0.368 6.368 24 C -0.143 4.143 25 C -0.165 4.165 26 C -0.158 4.158 27 C -0.151 4.151 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.242 0.758 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.222 0.778 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.115 0.885 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.764 11.658 17.977 21.604 hybrid contribution -1.029 -0.780 -0.671 1.455 sum -3.793 10.878 17.306 20.790 Atomic orbital electron populations 1.22745 0.80398 1.03142 0.99915 1.87737 1.20185 1.27594 1.95392 1.22601 0.91329 0.85174 1.00877 1.21505 0.94311 0.97290 0.95285 1.20114 0.80275 0.82007 0.86367 1.90659 1.36317 1.68889 1.46295 1.45944 1.49032 1.13923 1.26268 1.22222 1.00119 0.89181 0.85313 0.87992 1.21829 0.95196 0.91662 0.90864 1.44236 1.75117 1.07343 1.06093 1.19044 1.36021 0.97430 0.83131 0.90276 1.24801 1.01169 0.95962 0.98413 1.69918 1.49903 1.02524 1.34830 0.86157 0.78020 0.76810 0.84524 1.21072 1.21567 1.21160 1.21804 0.99726 0.90841 0.84717 1.23459 0.85663 0.93691 0.96313 0.92575 1.86467 1.38078 1.28411 1.83827 1.22380 0.97268 0.99808 0.94802 1.22532 0.97661 0.95224 1.01057 1.22335 0.99753 0.96858 0.96862 1.22198 0.99642 0.92976 1.00295 0.93847 0.94164 0.89302 0.92693 0.92163 0.75775 0.95866 0.93463 0.93653 0.92185 0.93442 0.77839 0.90589 0.90759 0.91163 0.91324 0.91386 0.91750 0.88545 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.27 7.89 -35.23 -0.28 -4.55 16 3 C 0.08 0.79 4.44 37.16 0.16 0.95 16 4 C -0.08 -0.96 0.66 -154.54 -0.10 -1.06 16 5 C 0.53 8.66 6.43 -10.98 -0.07 8.59 16 6 O -0.54 -11.00 14.85 5.56 0.08 -10.92 16 7 N -0.70 -11.59 4.52 -51.73 -0.23 -11.82 16 8 C 0.14 2.76 3.15 -65.78 -0.21 2.55 16 9 H 0.10 2.35 7.54 -51.93 -0.39 1.96 16 10 C 0.13 2.96 6.93 -2.53 -0.02 2.94 16 11 N -0.60 -15.81 3.39 -170.07 -0.58 -16.38 16 12 C -0.23 -6.51 10.28 -15.06 -0.15 -6.66 16 13 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 14 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 15 N -0.92 -27.16 10.31 55.49 0.57 -26.58 16 16 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.15 3.78 5.15 -3.06 -0.02 3.77 16 21 C 0.07 1.34 3.98 -24.90 -0.10 1.24 16 22 H 0.06 0.98 8.00 -51.93 -0.42 0.57 16 23 O -0.56 -10.23 13.39 -35.23 -0.47 -10.70 16 24 C -0.10 -1.08 5.62 -25.07 -0.14 -1.23 16 25 C -0.13 -1.24 6.91 -24.73 -0.17 -1.41 16 26 C -0.12 -1.09 6.83 -25.04 -0.17 -1.26 16 27 C -0.11 -1.24 6.06 -25.59 -0.16 -1.39 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 33 H 0.40 5.99 6.33 -40.82 -0.26 5.73 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.06 1.65 7.30 -51.93 -0.38 1.27 16 38 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 39 H 0.37 5.20 9.12 45.56 0.42 5.61 16 40 H 0.08 0.66 7.84 -51.93 -0.41 0.25 16 41 H 0.07 0.86 7.45 -51.93 -0.39 0.47 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.10 1.31 6.39 -51.93 -0.33 0.98 16 47 H 0.07 0.61 7.67 -51.93 -0.40 0.21 16 LS Contribution 368.97 15.07 5.56 5.56 Total: -1.00 -33.55 368.97 -7.63 -41.18 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -7.14 Total: 8.74 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -0.12 Total: 8.14 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.24 Total: -54.79 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.67 Total: -26.17 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.55 -7.63 -41.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193584254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.373 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds