Wall clock time and date at job start Fri Apr 10 2020 18:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53009 * 109.47113 * 180.02562 * 3 2 1 5 5 C 1.50704 * 110.01266 * 58.60827 * 4 3 2 6 6 O 1.21275 * 119.99513 * 120.70566 * 5 4 3 7 7 N 1.34775 * 119.99792 * 300.69872 * 5 4 3 8 8 C 1.46500 * 119.99622 * 180.02562 * 7 5 4 9 9 H 1.09001 * 110.88700 * 31.11853 * 8 7 5 10 10 C 1.54916 * 111.00353 * 267.19863 * 8 7 5 11 11 N 1.47423 * 104.82834 * 204.91639 * 10 8 7 12 12 C 1.36940 * 125.64378 * 204.10635 * 11 10 8 13 13 H 1.07997 * 120.00055 * 359.97438 * 12 11 10 14 14 C 1.38810 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31619 * 120.00139 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00273 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46933 * 59.99714 * 16 14 12 18 18 H 1.48498 * 109.47391 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46979 * 300.00047 * 16 14 12 20 20 C 1.47016 * 108.70852 * 24.12763 * 11 10 8 21 21 C 1.54332 * 107.26971 * 358.93818 * 20 11 10 22 22 H 1.09006 * 110.86812 * 96.24085 * 21 20 11 23 23 O 1.42895 * 110.72065 * 219.44250 * 21 20 11 24 24 C 1.54266 * 110.02811 * 297.16790 * 4 3 2 25 25 C 1.54896 * 104.19220 * 217.10449 * 24 4 3 26 26 C 1.54891 * 102.74702 * 37.94203 * 25 24 4 27 27 C 1.53875 * 110.03148 * 179.97438 * 4 3 2 28 28 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 29 29 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 30 30 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 32 32 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 33 33 H 0.96991 * 120.00305 * 0.02562 * 7 5 4 34 34 H 1.09000 * 110.36595 * 323.75178 * 10 8 7 35 35 H 1.08997 * 110.36801 * 86.07893 * 10 8 7 36 36 H 0.97002 * 120.00664 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.88659 * 239.52255 * 20 11 10 38 38 H 1.09000 * 109.88402 * 118.35408 * 20 11 10 39 39 H 0.96698 * 114.00497 * 293.52259 * 23 21 20 40 40 H 1.08997 * 110.48866 * 335.77917 * 24 4 3 41 41 H 1.08996 * 110.48867 * 98.42786 * 24 4 3 42 42 H 1.09002 * 110.75313 * 279.62711 * 25 24 4 43 43 H 1.08994 * 110.91189 * 156.32824 * 25 24 4 44 44 H 1.08998 * 110.48278 * 203.37937 * 26 25 24 45 45 H 1.08998 * 110.59903 * 80.79685 * 26 25 24 46 46 H 1.08999 * 110.03236 * 238.56857 * 27 4 3 47 47 H 1.08995 * 110.03064 * 359.95396 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 6 3.9909 0.4090 -1.2097 6 8 4.7448 0.9210 -2.0100 7 7 3.5606 -0.8537 -1.4016 8 6 4.0038 -1.6080 -2.5766 9 1 5.0072 -1.3059 -2.8766 10 6 3.0022 -1.4503 -3.7479 11 7 3.1951 -2.6559 -4.5742 12 6 2.9025 -2.7647 -5.9075 13 1 2.4927 -1.9199 -6.4411 14 6 3.1314 -3.9613 -6.5729 15 7 3.6303 -4.9910 -5.9224 16 14 2.7316 -4.1100 -8.3915 17 1 3.5273 -3.1163 -9.1562 18 1 3.0659 -5.4784 -8.8616 19 1 1.2843 -3.8534 -8.6028 20 6 3.7532 -3.7221 -3.7296 21 6 3.9382 -3.1357 -2.3141 22 1 3.0879 -3.3815 -1.6778 23 8 5.1562 -3.6011 -1.7293 24 6 4.0105 0.4831 1.2885 25 6 5.3275 1.2118 1.6543 26 6 5.0163 2.6843 1.2884 27 6 4.1750 2.5843 -0.0013 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 2.9575 -1.2630 -0.7617 34 1 1.9805 -1.4087 -3.3703 35 1 3.2311 -0.5544 -4.3248 36 1 3.7907 -5.8271 -6.3874 37 1 4.7161 -4.0436 -4.1264 38 1 3.0641 -4.5659 -3.6942 39 1 5.1666 -4.5503 -1.5453 40 1 3.2740 0.6049 2.0827 41 1 4.1989 -0.5738 1.1004 42 1 6.1572 0.8326 1.0577 43 1 5.5429 1.1153 2.7183 44 1 5.9388 3.2337 1.1003 45 1 4.4431 3.1637 2.0820 46 1 4.8155 2.7018 -0.8754 47 1 3.3987 3.3495 -0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193584254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:55 Heat of formation + Delta-G solvation = -136.231376 kcal Electronic energy + Delta-G solvation = -27940.476938 eV Core-core repulsion = 24122.682481 eV Total energy + Delta-G solvation = -3817.794456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.70351 -39.90068 -38.69253 -37.69353 -36.70098 -35.52622 -33.64830 -31.83495 -30.20608 -29.59722 -28.69912 -27.53307 -26.39872 -25.28120 -23.50856 -22.29725 -21.89083 -21.50472 -20.29418 -19.05581 -18.34638 -18.11071 -17.39303 -17.13746 -16.89384 -16.56079 -16.36625 -15.94910 -15.78926 -15.44735 -15.23268 -14.92267 -14.48478 -14.28790 -14.15436 -14.09764 -13.75788 -13.30457 -13.18390 -13.13531 -12.79458 -12.71179 -12.56772 -12.34596 -12.14312 -12.01927 -11.99107 -11.90516 -11.88779 -11.69640 -11.57011 -11.41045 -11.07236 -10.78216 -10.75764 -10.50876 -10.07235 -8.98964 -7.89710 -5.27612 1.44357 1.48460 1.54512 1.62212 2.10254 2.47164 2.73786 3.11671 3.30607 3.51738 3.53895 3.57228 3.79013 3.88662 4.02373 4.05569 4.18241 4.28085 4.30886 4.41329 4.50204 4.53817 4.55722 4.59705 4.62440 4.65224 4.77480 4.78658 4.84056 4.96223 4.97653 5.00853 5.08993 5.20850 5.27825 5.31998 5.34407 5.41683 5.48188 5.57387 5.63437 6.11359 6.18991 6.63827 6.84761 7.02798 7.31536 7.67093 8.30506 9.19869 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.019373 B = 0.003635 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.928296 B = 7701.964558 C = 7965.495731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.409 6.409 3 C 0.079 3.921 4 C -0.075 4.075 5 C 0.520 3.480 6 O -0.589 6.589 7 N -0.689 5.689 8 C 0.150 3.850 9 H 0.067 0.933 10 C 0.136 3.864 11 N -0.621 5.621 12 C -0.253 4.253 13 H 0.080 0.920 14 C -0.059 4.059 15 N -0.948 5.948 16 Si 0.982 3.018 17 H -0.281 1.281 18 H -0.290 1.290 19 H -0.273 1.273 20 C 0.164 3.836 21 C 0.092 3.908 22 H 0.089 0.911 23 O -0.569 6.569 24 C -0.100 4.100 25 C -0.129 4.129 26 C -0.114 4.114 27 C -0.115 4.115 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.417 0.583 34 H 0.040 0.960 35 H 0.029 0.971 36 H 0.250 0.750 37 H 0.021 0.979 38 H 0.027 0.973 39 H 0.396 0.604 40 H 0.105 0.895 41 H 0.059 0.941 42 H 0.042 0.958 43 H 0.092 0.908 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.061 0.939 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.175 11.965 21.160 24.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.328 6.328 3 C 0.002 3.998 4 C -0.078 4.078 5 C 0.308 3.692 6 O -0.470 6.470 7 N -0.341 5.341 8 C 0.043 3.957 9 H 0.085 0.915 10 C 0.009 3.991 11 N -0.349 5.349 12 C -0.381 4.381 13 H 0.098 0.902 14 C -0.253 4.253 15 N -0.596 5.596 16 Si 0.810 3.190 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.199 1.199 20 C 0.038 3.962 21 C 0.031 3.969 22 H 0.107 0.893 23 O -0.376 6.376 24 C -0.138 4.138 25 C -0.167 4.167 26 C -0.151 4.151 27 C -0.153 4.153 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.257 0.743 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.039 0.961 38 H 0.045 0.955 39 H 0.246 0.754 40 H 0.123 0.877 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.110 0.890 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.080 0.920 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.382 12.607 20.400 24.378 hybrid contribution -0.502 -1.060 -1.415 1.838 sum -4.884 11.546 18.985 22.751 Atomic orbital electron populations 1.22883 0.79112 1.03766 1.00821 1.87687 1.21585 1.27998 1.95574 1.22646 0.89677 0.85286 1.02187 1.21578 0.95845 0.97015 0.93406 1.21098 0.79155 0.81687 0.87279 1.90644 1.38248 1.69751 1.48312 1.45802 1.49180 1.13988 1.25173 1.21729 0.97682 0.90207 0.86061 0.91468 1.21868 0.96480 0.89677 0.91084 1.44505 1.75174 1.09005 1.06195 1.19416 1.36344 0.97775 0.84569 0.90177 1.25664 1.01195 0.95618 1.02789 1.70126 1.50522 1.02689 1.36247 0.85106 0.78232 0.76545 0.79138 1.20676 1.21535 1.19900 1.21601 0.96931 0.90358 0.87296 1.23138 0.87275 0.92534 0.93907 0.89289 1.86434 1.37496 1.30478 1.83204 1.22413 0.98160 0.98720 0.94504 1.22552 0.96504 0.95607 1.01999 1.22343 0.99805 0.96495 0.96502 1.22216 1.00035 0.93068 1.00012 0.94363 0.91822 0.88915 0.93545 0.88612 0.74312 0.94265 0.95214 0.94071 0.96078 0.95471 0.75426 0.87693 0.92181 0.93947 0.88975 0.91513 0.88823 0.92029 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.41 -7.82 7.89 -148.98 -1.18 -9.00 16 3 C 0.08 1.38 4.44 71.99 0.32 1.70 16 4 C -0.08 -1.66 0.66 -52.20 -0.03 -1.69 16 5 C 0.52 17.19 6.43 87.66 0.56 17.75 16 6 O -0.59 -24.89 14.85 -3.01 -0.04 -24.93 16 7 N -0.69 -22.58 4.52 -435.96 -1.97 -24.55 16 8 C 0.15 6.16 3.15 46.38 0.15 6.31 16 9 H 0.07 3.26 7.54 -2.39 -0.02 3.24 16 10 C 0.14 6.23 6.93 86.86 0.60 6.83 16 11 N -0.62 -33.68 3.39 -691.99 -2.35 -36.03 16 12 C -0.25 -14.76 10.28 84.03 0.86 -13.90 16 13 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 14 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 15 N -0.95 -57.12 10.31 21.65 0.22 -56.89 16 16 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 17 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 C 0.16 8.26 5.15 86.73 0.45 8.71 16 21 C 0.09 3.55 3.98 31.78 0.13 3.68 16 22 H 0.09 2.93 8.00 -2.38 -0.02 2.91 16 23 O -0.57 -20.35 13.39 -148.98 -1.99 -22.35 16 24 C -0.10 -1.81 5.62 31.67 0.18 -1.63 16 25 C -0.13 -2.24 6.91 31.89 0.22 -2.02 16 26 C -0.11 -1.76 6.83 31.69 0.22 -1.54 16 27 C -0.12 -2.35 6.06 31.34 0.19 -2.16 16 28 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.10 1.05 8.12 -2.38 -0.02 1.03 16 33 H 0.42 11.68 6.33 -92.71 -0.59 11.10 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 37 H 0.02 1.21 7.30 -2.39 -0.02 1.19 16 38 H 0.03 1.46 7.51 -2.39 -0.02 1.44 16 39 H 0.40 10.51 9.12 -74.06 -0.68 9.84 16 40 H 0.10 1.33 7.84 -2.39 -0.02 1.31 16 41 H 0.06 1.27 7.45 -2.39 -0.02 1.25 16 42 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.06 1.71 6.39 -2.39 -0.02 1.70 16 47 H 0.09 1.40 7.67 -2.39 -0.02 1.38 16 Total: -1.00 -76.23 368.97 -0.03 -76.25 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -0.29 Total: 28.23 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: 5.55 Total: 20.74 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -4.10 Total: -117.48 kcal Atomic # 8 Polarization: -53.06 SS G_CDS: -3.22 Total: -56.28 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -76.23 -0.03 -76.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193584254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.979 kcal (2) G-P(sol) polarization free energy of solvation -76.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds