Wall clock time and date at job start Fri Apr 10 2020 18:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99974 * 2 1 4 4 H 1.48503 * 109.47074 * 270.00164 * 3 2 1 5 5 H 1.48507 * 109.47070 * 29.99921 * 3 2 1 6 6 H 1.48501 * 109.47094 * 149.99782 * 3 2 1 7 7 C 1.38819 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00083 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99612 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99742 * 180.02562 * 9 7 2 11 11 C 1.53070 * 109.44278 * 84.79956 * 10 9 7 12 12 C 1.53195 * 109.29524 * 181.23594 * 11 10 9 13 13 N 1.46919 * 108.89273 * 305.57804 * 12 11 10 14 14 C 1.34783 * 120.63144 * 233.55709 * 13 12 11 15 15 O 1.21274 * 119.99655 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99922 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47009 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.47521 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47358 * 179.97438 * 18 17 16 20 20 N 1.46496 * 109.47163 * 180.02562 * 19 18 17 21 21 C 1.34770 * 120.00345 * 180.02562 * 20 19 18 22 22 N 1.34771 * 120.00506 * 179.97438 * 21 20 19 23 23 O 1.21590 * 119.99900 * 359.97438 * 21 20 19 24 24 C 1.46928 * 118.73982 * 53.53793 * 13 12 11 25 25 C 1.53039 * 109.46033 * 205.00442 * 10 9 7 26 26 H 0.96996 * 120.00214 * 359.97438 * 1 2 3 27 27 H 0.97004 * 120.00238 * 0.02562 * 9 7 2 28 28 H 1.09007 * 109.45852 * 324.97183 * 10 9 7 29 29 H 1.08997 * 109.38860 * 61.35781 * 11 10 9 30 30 H 1.09003 * 109.62046 * 301.25123 * 11 10 9 31 31 H 1.09002 * 109.58720 * 185.71834 * 12 11 10 32 32 H 1.08996 * 109.58651 * 65.43731 * 12 11 10 33 33 H 1.09001 * 109.47385 * 300.00399 * 16 14 13 34 34 H 1.08997 * 109.47457 * 60.00250 * 16 14 13 35 35 H 1.09001 * 109.46917 * 300.00128 * 17 16 14 36 36 H 1.08997 * 109.47262 * 59.99573 * 17 16 14 37 37 H 1.09004 * 109.46493 * 299.99956 * 18 17 16 38 38 H 1.08998 * 109.46599 * 59.99358 * 18 17 16 39 39 H 1.09001 * 109.47282 * 300.00086 * 19 18 17 40 40 H 1.08997 * 109.47062 * 59.99631 * 19 18 17 41 41 H 0.97002 * 119.99590 * 359.97438 * 20 19 18 42 42 H 0.97003 * 119.99946 * 0.02562 * 22 21 20 43 43 H 0.97006 * 120.00596 * 180.02562 * 22 21 20 44 44 H 1.08998 * 109.58787 * 66.18123 * 24 13 12 45 45 H 1.09007 * 109.58600 * 186.46436 * 24 13 12 46 46 H 1.09002 * 109.49876 * 58.67575 * 25 10 9 47 47 H 1.09005 * 109.52615 * 298.59825 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0000 10 6 4.1122 -2.4709 0.0000 11 6 4.2531 -2.9779 -1.4374 12 6 4.9923 -4.3196 -1.4307 13 7 6.2665 -4.1572 -0.7177 14 6 7.4287 -4.5179 -1.2973 15 8 7.4291 -4.9811 -2.4181 16 6 8.7275 -4.3445 -0.5530 17 6 9.8855 -4.8268 -1.4290 18 6 11.2043 -4.6514 -0.6733 19 6 12.3622 -5.1343 -1.5490 20 7 13.6247 -4.9669 -0.8251 21 6 14.7868 -5.3273 -1.4048 22 7 15.9484 -5.1729 -0.7390 23 8 14.7873 -5.7918 -2.5285 24 6 6.2500 -3.5938 0.6392 25 6 5.4999 -2.2584 0.6093 26 1 -0.4850 0.8400 0.0004 27 1 3.8647 -0.3621 -0.0004 28 1 3.5651 -3.2060 0.5903 29 1 4.8193 -2.2534 -2.0227 30 1 3.2646 -3.1092 -1.8777 31 1 5.1850 -4.6358 -2.4560 32 1 4.3838 -5.0695 -0.9254 33 1 8.8698 -3.2913 -0.3108 34 1 8.6999 -4.9283 0.3670 35 1 9.7435 -5.8800 -1.6716 36 1 9.9130 -4.2427 -2.3489 37 1 11.3465 -3.5983 -0.4304 38 1 11.1764 -5.2358 0.2464 39 1 12.2197 -6.1874 -1.7915 40 1 12.3901 -4.5502 -2.4689 41 1 13.6243 -4.5960 0.0712 42 1 15.9480 -4.8026 0.1576 43 1 16.7849 -5.4319 -1.1564 44 1 5.7430 -4.2827 1.3148 45 1 7.2727 -3.4332 0.9807 46 1 5.3966 -1.8764 1.6250 47 1 6.0569 -1.5416 0.0059 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201495324.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:32 Heat of formation + Delta-G solvation = -72.263388 kcal Electronic energy + Delta-G solvation = -25377.796019 eV Core-core repulsion = 21595.068174 eV Total energy + Delta-G solvation = -3782.727845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.25272 -40.09548 -37.65494 -36.37204 -34.65924 -34.30596 -33.59085 -32.07882 -31.10994 -30.03209 -29.12102 -25.42535 -24.40047 -22.90731 -22.32553 -21.77462 -21.38507 -20.22609 -18.94904 -18.62119 -17.73280 -17.55173 -16.97503 -16.50937 -15.80453 -15.70415 -15.21368 -14.87497 -14.84164 -14.59150 -14.13486 -14.01554 -13.79343 -13.44474 -13.27084 -12.79666 -12.71158 -12.48147 -12.32532 -12.12305 -11.88817 -11.72653 -11.47325 -11.07235 -11.04212 -10.98575 -10.91627 -10.70515 -10.52714 -10.33622 -10.14680 -10.01954 -9.68605 -9.63011 -9.43167 -8.96778 -8.56645 -7.32610 -5.81447 -3.17562 2.47505 2.64085 2.82164 3.03890 3.32960 3.36327 3.41823 4.03687 4.32135 4.42217 4.54634 4.55249 4.83589 4.89049 4.94840 5.00680 5.06811 5.24638 5.30404 5.32616 5.33055 5.44756 5.50948 5.53475 5.57751 5.68057 5.77800 5.84768 5.88368 6.00246 6.04796 6.08838 6.09489 6.21094 6.26162 6.42585 6.46815 6.48154 6.80880 6.91582 7.45757 7.51438 7.94109 8.19822 8.21020 8.37457 9.15521 9.88143 10.07580 11.36734 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.026619 B = 0.001968 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.643936 B =14226.276689 C =14797.565213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.183 3.817 11 C -0.150 4.150 12 C 0.111 3.889 13 N -0.609 5.609 14 C 0.511 3.489 15 O -0.547 6.547 16 C -0.139 4.139 17 C -0.101 4.101 18 C -0.131 4.131 19 C 0.135 3.865 20 N -0.746 5.746 21 C 0.703 3.297 22 N -0.869 5.869 23 O -0.594 6.594 24 C 0.111 3.889 25 C -0.144 4.144 26 H 0.260 0.740 27 H 0.360 0.640 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.396 0.604 42 H 0.396 0.604 43 H 0.414 0.586 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.317 -9.628 5.266 30.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.074 3.926 11 C -0.190 4.190 12 C -0.011 4.011 13 N -0.342 5.342 14 C 0.300 3.700 15 O -0.425 6.425 16 C -0.179 4.179 17 C -0.140 4.140 18 C -0.169 4.169 19 C 0.011 3.989 20 N -0.402 5.402 21 C 0.401 3.599 22 N -0.437 5.437 23 O -0.472 6.472 24 C -0.012 4.012 25 C -0.183 4.183 26 H 0.070 0.930 27 H 0.193 0.807 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.230 0.770 42 H 0.224 0.776 43 H 0.246 0.754 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 27.841 -10.313 3.707 29.920 hybrid contribution 0.772 1.670 0.824 2.016 sum 28.613 -8.642 4.531 30.231 Atomic orbital electron populations 1.69699 1.05105 1.25859 1.57361 1.24681 0.95223 0.97216 1.01963 0.86550 0.79129 0.85024 0.77772 1.21123 1.21752 1.20399 1.19069 0.80534 0.94708 1.43192 0.89166 1.42784 1.04028 1.01930 1.90283 1.20146 0.90030 0.89388 0.93086 1.22625 1.00521 0.95073 1.00828 1.21687 0.83161 0.98346 0.97918 1.48218 1.06894 1.62327 1.16776 1.20642 0.85299 0.77538 0.86551 1.90686 1.87040 1.45393 1.19413 1.21683 0.92585 1.03648 0.99960 1.21231 0.91167 1.03119 0.98461 1.21815 0.93971 1.02011 0.99063 1.21259 0.80634 1.01913 0.95078 1.45130 1.05737 1.69296 1.20036 1.16001 0.80861 0.78745 0.84334 1.43004 1.08126 1.71868 1.20749 1.90995 1.86334 1.51360 1.18503 1.21756 1.01180 0.95334 0.82935 1.22248 0.97581 0.96251 1.02212 0.93033 0.80693 0.92558 0.92438 0.90222 0.89579 0.91702 0.88853 0.88944 0.90727 0.90688 0.91104 0.91141 0.91314 0.91293 0.77008 0.77611 0.75368 0.91068 0.90053 0.90410 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.81 13.97 55.49 0.78 -28.03 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 21.67 27.73 -169.99 -4.71 16.95 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 7 C -0.25 -6.68 10.41 -15.06 -0.16 -6.84 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 9 N -0.75 -16.84 4.92 -53.37 -0.26 -17.10 16 10 C 0.18 3.23 2.73 -67.88 -0.19 3.04 16 11 C -0.15 -2.51 5.67 -26.59 -0.15 -2.66 16 12 C 0.11 1.59 6.43 -3.71 -0.02 1.57 16 13 N -0.61 -7.65 2.97 -172.77 -0.51 -8.16 16 14 C 0.51 6.47 7.70 -10.98 -0.08 6.38 16 15 O -0.55 -9.00 15.39 5.56 0.09 -8.91 16 16 C -0.14 -1.10 4.05 -27.88 -0.11 -1.21 16 17 C -0.10 -0.79 4.50 -26.73 -0.12 -0.91 16 18 C -0.13 -0.67 5.33 -26.73 -0.14 -0.81 16 19 C 0.14 0.96 5.67 -4.05 -0.02 0.94 16 20 N -0.75 -4.46 5.56 -65.23 -0.36 -4.83 16 21 C 0.70 6.04 8.84 -86.93 -0.77 5.27 16 22 N -0.87 -3.55 8.88 27.63 0.25 -3.31 16 23 O -0.59 -8.24 17.18 5.29 0.09 -8.15 16 24 C 0.11 1.15 6.34 -3.71 -0.02 1.12 16 25 C -0.14 -1.92 5.55 -26.61 -0.15 -2.07 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.36 8.03 5.66 -40.82 -0.23 7.80 16 28 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 31 H 0.09 1.32 7.00 -51.93 -0.36 0.95 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.62 7.69 -51.93 -0.40 0.22 16 34 H 0.09 0.55 7.94 -51.93 -0.41 0.13 16 35 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.40 1.08 8.49 -40.82 -0.35 0.74 16 42 H 0.40 0.31 8.84 -40.82 -0.36 -0.05 16 43 H 0.41 1.43 8.93 -40.82 -0.36 1.07 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.59 5.93 -51.92 -0.31 0.28 16 46 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -37.29 378.62 -8.85 -46.14 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.87 Total: 5.82 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -2.03 Total: 3.87 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.12 Total: -61.43 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: 0.18 Total: -17.06 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.95 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.29 -8.85 -46.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201495324.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.123 kcal (2) G-P(sol) polarization free energy of solvation -37.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds