Wall clock time and date at job start Fri Apr 10 2020 18:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99974 * 2 1 4 4 H 1.48503 * 109.47074 * 270.00164 * 3 2 1 5 5 H 1.48507 * 109.47070 * 29.99921 * 3 2 1 6 6 H 1.48501 * 109.47094 * 149.99782 * 3 2 1 7 7 C 1.38819 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00083 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99612 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99742 * 180.02562 * 9 7 2 11 11 C 1.53070 * 109.44278 * 84.79956 * 10 9 7 12 12 C 1.53195 * 109.29524 * 181.23594 * 11 10 9 13 13 N 1.46919 * 108.89273 * 305.57804 * 12 11 10 14 14 C 1.34783 * 120.63144 * 233.55709 * 13 12 11 15 15 O 1.21274 * 119.99655 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99922 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47009 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.47521 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47358 * 179.97438 * 18 17 16 20 20 N 1.46496 * 109.47163 * 180.02562 * 19 18 17 21 21 C 1.34770 * 120.00345 * 180.02562 * 20 19 18 22 22 N 1.34771 * 120.00506 * 179.97438 * 21 20 19 23 23 O 1.21590 * 119.99900 * 359.97438 * 21 20 19 24 24 C 1.46928 * 118.73982 * 53.53793 * 13 12 11 25 25 C 1.53039 * 109.46033 * 205.00442 * 10 9 7 26 26 H 0.96996 * 120.00214 * 359.97438 * 1 2 3 27 27 H 0.97004 * 120.00238 * 0.02562 * 9 7 2 28 28 H 1.09007 * 109.45852 * 324.97183 * 10 9 7 29 29 H 1.08997 * 109.38860 * 61.35781 * 11 10 9 30 30 H 1.09003 * 109.62046 * 301.25123 * 11 10 9 31 31 H 1.09002 * 109.58720 * 185.71834 * 12 11 10 32 32 H 1.08996 * 109.58651 * 65.43731 * 12 11 10 33 33 H 1.09001 * 109.47385 * 300.00399 * 16 14 13 34 34 H 1.08997 * 109.47457 * 60.00250 * 16 14 13 35 35 H 1.09001 * 109.46917 * 300.00128 * 17 16 14 36 36 H 1.08997 * 109.47262 * 59.99573 * 17 16 14 37 37 H 1.09004 * 109.46493 * 299.99956 * 18 17 16 38 38 H 1.08998 * 109.46599 * 59.99358 * 18 17 16 39 39 H 1.09001 * 109.47282 * 300.00086 * 19 18 17 40 40 H 1.08997 * 109.47062 * 59.99631 * 19 18 17 41 41 H 0.97002 * 119.99590 * 359.97438 * 20 19 18 42 42 H 0.97003 * 119.99946 * 0.02562 * 22 21 20 43 43 H 0.97006 * 120.00596 * 180.02562 * 22 21 20 44 44 H 1.08998 * 109.58787 * 66.18123 * 24 13 12 45 45 H 1.09007 * 109.58600 * 186.46436 * 24 13 12 46 46 H 1.09002 * 109.49876 * 58.67575 * 25 10 9 47 47 H 1.09005 * 109.52615 * 298.59825 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0000 10 6 4.1122 -2.4709 0.0000 11 6 4.2531 -2.9779 -1.4374 12 6 4.9923 -4.3196 -1.4307 13 7 6.2665 -4.1572 -0.7177 14 6 7.4287 -4.5179 -1.2973 15 8 7.4291 -4.9811 -2.4181 16 6 8.7275 -4.3445 -0.5530 17 6 9.8855 -4.8268 -1.4290 18 6 11.2043 -4.6514 -0.6733 19 6 12.3622 -5.1343 -1.5490 20 7 13.6247 -4.9669 -0.8251 21 6 14.7868 -5.3273 -1.4048 22 7 15.9484 -5.1729 -0.7390 23 8 14.7873 -5.7918 -2.5285 24 6 6.2500 -3.5938 0.6392 25 6 5.4999 -2.2584 0.6093 26 1 -0.4850 0.8400 0.0004 27 1 3.8647 -0.3621 -0.0004 28 1 3.5651 -3.2060 0.5903 29 1 4.8193 -2.2534 -2.0227 30 1 3.2646 -3.1092 -1.8777 31 1 5.1850 -4.6358 -2.4560 32 1 4.3838 -5.0695 -0.9254 33 1 8.8698 -3.2913 -0.3108 34 1 8.6999 -4.9283 0.3670 35 1 9.7435 -5.8800 -1.6716 36 1 9.9130 -4.2427 -2.3489 37 1 11.3465 -3.5983 -0.4304 38 1 11.1764 -5.2358 0.2464 39 1 12.2197 -6.1874 -1.7915 40 1 12.3901 -4.5502 -2.4689 41 1 13.6243 -4.5960 0.0712 42 1 15.9480 -4.8026 0.1576 43 1 16.7849 -5.4319 -1.1564 44 1 5.7430 -4.2827 1.3148 45 1 7.2727 -3.4332 0.9807 46 1 5.3966 -1.8764 1.6250 47 1 6.0569 -1.5416 0.0059 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201495324.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:31 Heat of formation + Delta-G solvation = -103.153487 kcal Electronic energy + Delta-G solvation = -25379.135514 eV Core-core repulsion = 21595.068174 eV Total energy + Delta-G solvation = -3784.067340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.20185 -40.79398 -38.86260 -37.01267 -36.22064 -34.97906 -34.19202 -33.84774 -32.20680 -31.56280 -29.89867 -26.70498 -25.44462 -23.99233 -23.81125 -22.37957 -22.09963 -21.44979 -20.17816 -19.35008 -19.14052 -18.20737 -17.99232 -17.12582 -16.78745 -16.68455 -16.47025 -15.88376 -15.73040 -15.60106 -15.24451 -15.08870 -14.97950 -14.72089 -14.46068 -14.25955 -13.78063 -13.60349 -13.35060 -13.10227 -12.94370 -12.65586 -12.61186 -12.42567 -12.17405 -12.07847 -11.98140 -11.92086 -11.77625 -11.51394 -11.50048 -11.38700 -10.93888 -10.73474 -10.71279 -9.95054 -9.63623 -9.30323 -8.01366 -5.34734 1.37553 1.41802 1.48967 1.70279 1.94974 2.13001 2.17854 2.49302 3.29936 3.51289 3.60820 3.73033 3.82229 3.90773 4.06675 4.13998 4.19231 4.32489 4.36911 4.41851 4.42511 4.55347 4.64007 4.70460 4.81322 4.83607 4.86009 4.91461 4.91825 4.98737 5.07225 5.14045 5.31682 5.35917 5.43916 5.47024 5.53068 5.63975 5.78754 5.92952 6.05540 6.22789 6.51780 7.09334 7.14434 7.24456 7.67515 7.85811 8.04402 9.20125 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.026619 B = 0.001968 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.643936 B =14226.276689 C =14797.565213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.955 3.045 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.245 1.245 7 C -0.228 4.228 8 H 0.056 0.944 9 N -0.751 5.751 10 C 0.174 3.826 11 C -0.139 4.139 12 C 0.120 3.880 13 N -0.611 5.611 14 C 0.504 3.496 15 O -0.595 6.595 16 C -0.129 4.129 17 C -0.100 4.100 18 C -0.112 4.112 19 C 0.135 3.865 20 N -0.730 5.730 21 C 0.693 3.307 22 N -0.848 5.848 23 O -0.655 6.655 24 C 0.114 3.886 25 C -0.135 4.135 26 H 0.256 0.744 27 H 0.365 0.635 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.416 0.584 42 H 0.415 0.585 43 H 0.419 0.581 44 H 0.085 0.915 45 H 0.128 0.872 46 H 0.090 0.910 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.845 -8.847 8.174 34.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.783 3.217 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.169 1.169 7 C -0.359 4.359 8 H 0.074 0.926 9 N -0.394 5.394 10 C 0.066 3.934 11 C -0.180 4.180 12 C -0.004 4.004 13 N -0.343 5.343 14 C 0.294 3.706 15 O -0.476 6.476 16 C -0.169 4.169 17 C -0.139 4.139 18 C -0.150 4.150 19 C 0.010 3.990 20 N -0.388 5.388 21 C 0.391 3.609 22 N -0.417 5.417 23 O -0.537 6.537 24 C -0.008 4.008 25 C -0.174 4.174 26 H 0.065 0.935 27 H 0.198 0.802 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.253 0.747 42 H 0.247 0.753 43 H 0.251 0.749 44 H 0.103 0.897 45 H 0.146 0.854 46 H 0.108 0.892 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 31.452 -9.534 6.714 33.544 hybrid contribution -0.342 1.306 -0.112 1.355 sum 31.110 -8.228 6.602 32.850 Atomic orbital electron populations 1.69891 1.07211 1.26573 1.59927 1.25521 0.96089 1.01309 1.02884 0.85404 0.78919 0.79632 0.77766 1.21208 1.22448 1.16911 1.19031 0.82763 0.93287 1.40809 0.92626 1.42811 1.02358 1.04021 1.90180 1.20437 0.92364 0.87126 0.93464 1.22423 0.99163 0.96414 0.99984 1.21409 0.84402 0.96717 0.97872 1.48323 1.06053 1.62351 1.17588 1.21598 0.86567 0.76215 0.86182 1.90675 1.87722 1.47449 1.21791 1.21757 0.89025 1.05878 1.00196 1.21178 0.92946 1.01605 0.98201 1.21671 0.91018 1.03578 0.98737 1.21172 0.82063 1.00544 0.95235 1.44916 1.04632 1.68559 1.20644 1.16325 0.82216 0.78520 0.83858 1.42796 1.06965 1.70641 1.21297 1.90956 1.87296 1.54127 1.21347 1.21973 1.03624 0.93535 0.81666 1.22162 0.94496 0.98414 1.02322 0.93486 0.80194 0.93465 0.93375 0.93246 0.91054 0.90817 0.86152 0.85500 0.92561 0.93039 0.89051 0.88680 0.93208 0.93475 0.74681 0.75342 0.74851 0.89671 0.85422 0.89174 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.79 13.97 21.65 0.30 -62.49 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 3 Si 0.96 44.59 27.73 68.60 1.90 46.50 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.24 -9.98 6.52 99.48 0.65 -9.33 16 7 C -0.23 -12.64 10.41 84.04 0.87 -11.77 16 8 H 0.06 3.41 8.06 -2.91 -0.02 3.38 16 9 N -0.75 -33.14 4.92 -322.76 -1.59 -34.73 16 10 C 0.17 5.93 2.73 45.03 0.12 6.05 16 11 C -0.14 -4.69 5.67 30.68 0.17 -4.52 16 12 C 0.12 3.37 6.43 86.36 0.56 3.93 16 13 N -0.61 -13.69 2.97 -818.91 -2.44 -16.13 16 14 C 0.50 11.53 7.70 87.66 0.67 12.20 16 15 O -0.60 -19.46 15.39 -3.01 -0.05 -19.51 16 16 C -0.13 -1.46 4.05 29.85 0.12 -1.34 16 17 C -0.10 -1.34 4.50 30.60 0.14 -1.21 16 18 C -0.11 -0.74 5.33 30.59 0.16 -0.58 16 19 C 0.13 1.76 5.67 86.38 0.49 2.25 16 20 N -0.73 -7.17 5.56 -478.56 -2.66 -9.83 16 21 C 0.69 11.16 8.84 179.06 1.58 12.74 16 22 N -0.85 -5.22 8.88 -184.75 -1.64 -6.86 16 23 O -0.65 -18.51 17.18 -4.00 -0.07 -18.58 16 24 C 0.11 1.79 6.34 86.36 0.55 2.34 16 25 C -0.14 -3.10 5.55 30.67 0.17 -2.93 16 26 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.36 15.40 5.66 -92.71 -0.52 14.87 16 28 H 0.05 1.70 8.08 -2.38 -0.02 1.68 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 2.24 7.00 -2.39 -0.02 2.22 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.12 0.81 7.69 -2.39 -0.02 0.79 16 34 H 0.13 0.66 7.94 -2.39 -0.02 0.64 16 35 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 36 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 37 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 38 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.42 0.71 8.49 -92.71 -0.79 -0.08 16 42 H 0.42 -0.63 8.84 -92.71 -0.82 -1.45 16 43 H 0.42 2.22 8.93 -92.70 -0.83 1.39 16 44 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.13 0.93 5.93 -2.38 -0.01 0.91 16 46 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -87.79 378.62 -2.17 -89.95 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -2.01 Total: 17.90 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 6.08 Total: 13.77 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -8.02 Total: -130.03 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.12 Total: -38.09 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.90 Total: 46.50 kcal Total: -87.79 -2.17 -89.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201495324.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.200 kcal (2) G-P(sol) polarization free energy of solvation -87.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds