Wall clock time and date at job start Fri Apr 10 2020 18:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 113.99887 * 2 1 4 4 C 1.52998 * 109.46655 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.47359 * 65.00327 * 4 3 2 6 6 C 1.42900 * 114.00443 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47259 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00261 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99675 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99604 * 180.02562 * 9 7 6 11 11 H 1.08992 * 112.95362 * 333.09741 * 10 9 7 12 12 C 1.53954 * 113.66352 * 104.50646 * 10 9 7 13 13 C 1.53957 * 87.29472 * 89.73561 * 12 10 9 14 14 H 1.08999 * 113.65997 * 139.29752 * 13 12 10 15 15 N 1.46497 * 113.66334 * 270.26287 * 13 12 10 16 16 C 1.36936 * 120.00036 * 255.49762 * 15 13 12 17 17 H 1.08003 * 119.99908 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00239 * 180.02562 * 16 15 13 19 19 N 1.31616 * 120.00040 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00181 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47123 * 59.99478 * 20 18 16 22 22 H 1.48496 * 109.47094 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46855 * 299.99623 * 20 18 16 24 24 C 1.52904 * 86.78105 * 24.73709 * 13 12 10 25 25 C 1.52910 * 121.13709 * 209.38125 * 24 13 12 26 26 C 1.53947 * 86.78382 * 209.38040 * 25 24 13 27 27 C 1.52905 * 121.14213 * 100.82198 * 24 13 12 28 28 H 1.08999 * 109.47005 * 60.00150 * 1 2 3 29 29 H 1.09000 * 109.47393 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47315 * 300.00189 * 1 2 3 31 31 H 1.09005 * 109.46797 * 60.00094 * 3 2 1 32 32 H 1.08995 * 109.47372 * 299.99938 * 3 2 1 33 33 H 1.08995 * 109.47616 * 305.00073 * 4 3 2 34 34 H 1.09010 * 109.46980 * 185.00229 * 4 3 2 35 35 H 1.09006 * 109.46675 * 59.99605 * 6 5 4 36 36 H 1.08998 * 109.46858 * 300.00503 * 6 5 4 37 37 H 0.96993 * 120.00338 * 0.02562 * 9 7 6 38 38 H 1.08998 * 113.57647 * 335.13318 * 12 10 9 39 39 H 1.09000 * 113.58060 * 204.33785 * 12 10 9 40 40 H 0.96996 * 120.00413 * 75.49216 * 15 13 12 41 41 H 0.96996 * 120.00330 * 179.97438 * 19 18 16 42 42 H 1.09003 * 113.66021 * 323.85551 * 25 24 13 43 43 H 1.09001 * 113.66716 * 94.90405 * 25 24 13 44 44 H 1.09003 * 113.57959 * 270.12744 * 26 25 24 45 45 H 1.08997 * 113.65032 * 139.34996 * 26 25 24 46 46 H 1.09004 * 113.66112 * 265.09171 * 27 24 13 47 47 H 1.09000 * 113.66163 * 36.04353 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 8 3.9658 0.5791 -1.2201 6 6 5.3822 0.4195 -1.3221 7 6 5.7214 -0.2254 -2.6411 8 8 4.8374 -0.5190 -3.4178 9 7 7.0073 -0.4759 -2.9578 10 6 7.3371 -1.1023 -4.2404 11 1 6.5305 -1.7231 -4.6301 12 6 7.9175 -0.1219 -5.2758 13 6 9.3085 -0.4629 -4.7109 14 1 10.0769 -0.5714 -5.4763 15 7 9.7233 0.4051 -3.6060 16 6 10.6552 1.3857 -3.8185 17 1 11.0847 1.5190 -4.8004 18 6 11.0487 2.2078 -2.7715 19 7 10.5258 2.0451 -1.5747 20 14 12.3205 3.5451 -3.0611 21 1 11.8191 4.4905 -4.0907 22 1 12.5650 4.2786 -1.7933 23 1 13.5881 2.9295 -3.5297 24 6 8.7026 -1.7904 -4.2543 25 6 9.2335 -2.5185 -3.0189 26 6 8.7952 -3.8241 -3.7069 27 6 8.9311 -3.0780 -5.0466 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.8508 0.5684 0.8426 34 1 3.9785 2.1765 0.0903 35 1 5.7362 -0.2123 -0.5074 36 1 5.8632 1.3957 -1.2600 37 1 7.7143 -0.2414 -2.3366 38 1 7.6213 0.9138 -5.1095 39 1 7.7754 -0.4428 -6.3078 40 1 9.3379 0.2853 -2.7240 41 1 10.8010 2.6193 -0.8430 42 1 10.3125 -2.4325 -2.8905 43 1 8.6781 -2.2963 -2.1077 44 1 7.7718 -4.1178 -3.4732 45 1 9.5070 -4.6410 -3.5885 46 1 8.1341 -3.3028 -5.7554 47 1 9.9245 -3.1486 -5.4896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202624569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:34 Heat of formation + Delta-G solvation = -64.094787 kcal Electronic energy + Delta-G solvation = -26787.448567 eV Core-core repulsion = 22972.782188 eV Total energy + Delta-G solvation = -3814.666379 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.61879 -39.00191 -38.15862 -36.87623 -35.23884 -33.61173 -32.31491 -30.72992 -29.84792 -27.57138 -26.32919 -25.46103 -24.48042 -24.00914 -22.74539 -22.58404 -20.30463 -19.97180 -18.30507 -17.28532 -17.03914 -16.89206 -16.55263 -15.85165 -15.58486 -15.29209 -15.23265 -15.19075 -14.56962 -14.44209 -14.09913 -13.77401 -13.25070 -13.01158 -12.73052 -12.49636 -12.38962 -12.21849 -12.04238 -11.78854 -11.55520 -11.50839 -11.38686 -11.17210 -10.95857 -10.88205 -10.66241 -10.27492 -10.08965 -9.85746 -9.82433 -9.73553 -9.67109 -9.38929 -9.32883 -8.88383 -8.48304 -7.06170 -5.88967 -3.16650 2.95026 3.01917 3.38492 3.43317 3.43970 3.61473 4.04801 4.48934 4.76336 4.82405 4.93204 4.98921 5.02740 5.07722 5.15022 5.16592 5.17732 5.27769 5.29332 5.33303 5.36069 5.39856 5.47291 5.50801 5.59218 5.63741 5.87627 5.89978 5.97292 6.02983 6.10936 6.14517 6.28673 6.34250 6.42610 6.62991 6.72247 6.75453 6.94217 6.97080 7.06487 7.17468 7.63588 7.93110 8.31051 8.60738 9.41786 9.97105 10.31162 11.33864 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.011123 B = 0.003694 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.814581 B = 7578.576644 C = 9426.608973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.064 3.936 4 C 0.060 3.940 5 O -0.356 6.356 6 C 0.043 3.957 7 C 0.519 3.481 8 O -0.531 6.531 9 N -0.697 5.697 10 C 0.154 3.846 11 H 0.090 0.910 12 C -0.186 4.186 13 C 0.179 3.821 14 H 0.064 0.936 15 N -0.700 5.700 16 C -0.239 4.239 17 H 0.072 0.928 18 C -0.011 4.011 19 N -0.935 5.935 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.130 4.130 25 C -0.116 4.116 26 C -0.141 4.141 27 C -0.104 4.104 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.407 0.593 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.379 0.621 41 H 0.256 0.744 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.113 -6.018 2.718 13.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.012 4.012 4 C -0.016 4.016 5 O -0.274 6.274 6 C -0.037 4.037 7 C 0.304 3.696 8 O -0.407 6.407 9 N -0.351 5.351 10 C 0.049 3.951 11 H 0.108 0.892 12 C -0.228 4.228 13 C 0.067 3.933 14 H 0.082 0.918 15 N -0.340 5.340 16 C -0.370 4.370 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.583 5.583 20 Si 0.740 3.260 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.133 4.133 25 C -0.153 4.153 26 C -0.179 4.179 27 C -0.142 4.142 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.245 0.755 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.214 0.786 41 H 0.066 0.934 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.624 -6.294 2.005 14.248 hybrid contribution 0.868 1.341 0.757 1.768 sum -11.755 -4.953 2.762 13.052 Atomic orbital electron populations 1.22731 0.81270 1.02774 0.99734 1.87987 1.19431 1.27324 1.95339 1.22549 0.92334 0.85499 1.00848 1.22584 0.93420 0.97869 0.87773 1.88044 1.19809 1.82019 1.37549 1.22219 0.83657 1.01526 0.96318 1.20103 0.82766 0.78850 0.87863 1.90682 1.47098 1.51632 1.51330 1.45593 1.07336 1.62020 1.20174 1.21382 0.94951 0.94595 0.84162 0.89194 1.24291 1.01134 0.99945 0.97437 1.21049 0.92837 0.88160 0.91215 0.91802 1.42072 1.48247 1.36488 1.07155 1.19233 1.14652 1.07706 0.95440 0.90978 1.24710 1.00468 0.99930 0.95575 1.69603 1.46572 1.41741 1.00412 0.86237 0.81338 0.81715 0.76696 1.21272 1.21716 1.21247 1.23398 0.96338 0.95252 0.98270 1.22513 1.01470 0.94760 0.96600 1.22856 1.01059 0.96983 0.96986 1.22481 1.01808 0.93839 0.96084 0.94013 0.89665 0.94343 0.91796 0.92240 0.92223 0.91379 0.90265 0.89688 0.75473 0.90961 0.90517 0.78563 0.93379 0.89441 0.92005 0.90742 0.91932 0.91631 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.94 10.67 -40.09 -0.43 -5.37 16 3 C 0.06 0.69 6.32 37.16 0.23 0.93 16 4 C 0.06 0.71 6.32 37.16 0.23 0.94 16 5 O -0.36 -5.74 9.84 -59.73 -0.59 -6.33 16 6 C 0.04 0.64 6.42 36.00 0.23 0.87 16 7 C 0.52 9.44 7.91 -10.99 -0.09 9.36 16 8 O -0.53 -11.50 16.14 -14.35 -0.23 -11.73 16 9 N -0.70 -12.16 4.71 -53.37 -0.25 -12.41 16 10 C 0.15 2.65 4.08 -67.48 -0.28 2.38 16 11 H 0.09 1.58 7.55 -51.93 -0.39 1.19 16 12 C -0.19 -3.37 7.68 -25.74 -0.20 -3.56 16 13 C 0.18 3.43 4.35 -67.48 -0.29 3.13 16 14 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 15 N -0.70 -16.14 4.97 -52.99 -0.26 -16.40 16 16 C -0.24 -6.26 9.98 -15.06 -0.15 -6.41 16 17 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 19 N -0.94 -26.07 13.06 55.49 0.72 -25.35 16 20 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.13 -2.08 0.77 -154.71 -0.12 -2.19 16 25 C -0.12 -1.78 7.18 -26.28 -0.19 -1.97 16 26 C -0.14 -1.83 8.08 -25.76 -0.21 -2.04 16 27 C -0.10 -1.38 7.84 -26.29 -0.21 -1.58 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.41 7.24 5.92 -40.82 -0.24 7.00 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.38 8.93 5.39 -40.82 -0.22 8.71 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.06 0.96 7.51 -51.93 -0.39 0.57 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 384.58 15.07 5.80 5.80 Total: -1.00 -32.13 384.58 -8.25 -40.38 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -7.97 Total: 14.07 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -0.01 Total: 0.85 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.21 Total: -54.16 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -1.25 Total: -23.43 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.13 -8.25 -40.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202624569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.716 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds