Wall clock time and date at job start Fri Apr 10 2020 18:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34776 * 120.00210 * 2 1 4 4 O 1.21585 * 119.99895 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00148 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00215 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47123 * 179.97438 * 6 5 3 8 8 C 1.50698 * 109.46931 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.41904 * 178.67276 * 13 12 11 15 15 N 1.46500 * 109.47150 * 295.13157 * 14 13 12 16 16 C 1.36934 * 119.99724 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00570 * 359.97438 * 16 15 14 18 18 C 1.38817 * 119.99789 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99915 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47150 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46998 * 120.00159 * 20 18 16 23 23 H 1.48507 * 109.47070 * 240.00019 * 20 18 16 24 24 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 25 25 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 26 26 H 1.08999 * 109.47203 * 300.00334 * 1 2 3 27 27 H 1.09004 * 109.47035 * 59.99625 * 1 2 3 28 28 H 1.08994 * 109.47222 * 179.97438 * 1 2 3 29 29 H 0.97003 * 119.99314 * 180.02562 * 2 1 3 30 30 H 0.97003 * 119.99376 * 0.02562 * 5 3 2 31 31 H 1.08996 * 109.47101 * 60.00019 * 6 5 3 32 32 H 1.09001 * 109.47107 * 300.00020 * 6 5 3 33 33 H 1.09001 * 109.46646 * 59.99879 * 7 6 5 34 34 H 1.09001 * 109.47188 * 300.00022 * 7 6 5 35 35 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 36 36 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 37 37 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 38 38 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 39 39 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 40 40 H 1.09001 * 109.46592 * 55.13132 * 14 13 12 41 41 H 1.08997 * 109.47133 * 175.12697 * 14 13 12 42 42 H 0.96999 * 119.99704 * 359.97438 * 15 14 13 43 43 H 0.97003 * 120.00052 * 179.97438 * 19 18 16 44 44 H 1.08994 * 109.50232 * 301.42239 * 24 13 12 45 45 H 1.09007 * 109.52628 * 181.33900 * 24 13 12 46 46 H 1.08994 * 109.58580 * 353.38021 * 25 10 8 47 47 H 1.09006 * 109.57831 * 113.65514 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2193 2.4358 0.0000 7 6 5.7235 2.1562 -0.0001 8 6 6.4770 3.4613 -0.0001 9 8 5.8706 4.5115 0.0004 10 7 7.8248 3.4612 -0.0008 11 6 8.5734 4.7254 -0.0014 12 6 9.5658 4.7148 1.1656 13 6 10.4434 3.4611 1.0683 14 6 11.4592 3.4611 2.2125 15 7 12.3753 4.5929 2.0523 16 6 13.3760 4.7982 2.9642 17 1 13.4896 4.1260 3.8019 18 6 14.2445 5.8704 2.8121 19 7 14.1064 6.6894 1.7910 20 14 15.6099 6.1500 4.0557 21 1 15.5508 5.0968 5.1010 22 1 16.9249 6.0927 3.3682 23 1 15.4391 7.4834 4.6870 24 6 9.5659 2.2111 1.1655 25 6 8.5734 2.1969 -0.0020 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.9499 -0.8401 -0.0004 30 1 3.9716 0.3270 -0.0013 31 1 3.9563 3.0068 0.8905 32 1 3.9556 3.0080 -0.8895 33 1 5.9867 1.5850 -0.8903 34 1 5.9868 1.5842 0.8896 35 1 9.1157 4.8285 -0.9413 36 1 7.8817 5.5597 0.1147 37 1 10.1919 5.6058 1.1189 38 1 9.0187 4.7030 2.1083 39 1 10.9710 3.4611 0.1145 40 1 10.9346 3.5500 3.1639 41 1 12.0255 2.5299 2.1956 42 1 12.2731 5.1969 1.3002 43 1 14.7130 7.4388 1.6849 44 1 9.0190 2.2228 2.1082 45 1 10.1935 1.3210 1.1200 46 1 7.8818 1.3627 0.1162 47 1 9.1136 2.0931 -0.9430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205177425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:48 Heat of formation + Delta-G solvation = -62.056088 kcal Electronic energy + Delta-G solvation = -25599.712326 eV Core-core repulsion = 21817.427103 eV Total energy + Delta-G solvation = -3782.285223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.50678 -40.04317 -37.85167 -35.66371 -34.98841 -34.81242 -32.90481 -31.76919 -30.74753 -30.20783 -27.24008 -26.54187 -24.25178 -23.79768 -22.66331 -21.77633 -21.32732 -20.23343 -19.29149 -18.60810 -17.55106 -17.01133 -16.41808 -16.33172 -15.86371 -15.61127 -14.80528 -14.70248 -14.57745 -14.40465 -14.28876 -13.84529 -13.69145 -13.46054 -13.42119 -12.97316 -12.92832 -12.63573 -12.42195 -12.33537 -11.99058 -11.87696 -11.75741 -11.20489 -11.01102 -10.85787 -10.59363 -10.49734 -10.39124 -10.19721 -9.96868 -9.89298 -9.67357 -9.65355 -9.20883 -8.88620 -8.66837 -6.92427 -5.77691 -3.05984 2.27082 2.49320 2.89913 2.94486 3.42573 3.48191 3.50456 3.86491 4.34526 4.43230 4.56707 4.68326 4.72440 4.78222 4.93418 5.00528 5.05082 5.14273 5.22159 5.34472 5.39690 5.42872 5.54583 5.57942 5.60435 5.69518 5.77850 5.89477 5.96502 6.02882 6.06903 6.10151 6.13334 6.26748 6.35361 6.48014 6.49174 6.66706 6.77702 6.89060 7.30613 7.61961 7.69588 8.04831 8.26501 8.41469 9.52725 10.10883 10.45280 11.45264 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.038779 B = 0.001930 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.860986 B =14504.926580 C =14731.596841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.753 5.753 3 C 0.701 3.299 4 O -0.585 6.585 5 N -0.747 5.747 6 C 0.153 3.847 7 C -0.152 4.152 8 C 0.518 3.482 9 O -0.539 6.539 10 N -0.607 5.607 11 C 0.110 3.890 12 C -0.124 4.124 13 C -0.094 4.094 14 C 0.158 3.842 15 N -0.732 5.732 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.127 4.127 25 C 0.107 3.893 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.397 0.603 30 H 0.395 0.605 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.017 0.983 41 H 0.018 0.982 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.713 -18.968 -6.524 29.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.409 5.409 3 C 0.401 3.599 4 O -0.462 6.462 5 N -0.403 5.403 6 C 0.029 3.971 7 C -0.193 4.193 8 C 0.305 3.695 9 O -0.417 6.417 10 N -0.341 5.341 11 C -0.012 4.012 12 C -0.162 4.162 13 C -0.113 4.113 14 C 0.031 3.969 15 N -0.376 5.376 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.166 4.166 25 C -0.016 4.016 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.230 0.770 30 H 0.228 0.772 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.035 0.965 41 H 0.036 0.964 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.514 -17.411 -6.377 29.167 hybrid contribution 1.439 -0.549 0.466 1.609 sum -21.075 -17.960 -5.911 28.313 Atomic orbital electron populations 1.21395 0.78079 1.01935 1.02397 1.44918 1.07827 1.07074 1.81036 1.15938 0.81703 0.84322 0.77986 1.90970 1.67772 1.30300 1.57168 1.45084 1.04789 1.09767 1.80686 1.20894 0.87958 0.84121 1.04167 1.21829 0.95296 0.97216 1.04929 1.20237 0.82112 0.90776 0.76384 1.90742 1.67528 1.33503 1.49894 1.48160 1.05154 1.08057 1.72725 1.21729 0.94530 0.85746 0.99186 1.21975 0.96994 0.99627 0.97582 1.21364 0.95750 0.93595 1.00633 1.20664 0.90232 0.91558 0.94482 1.42376 1.33995 1.30155 1.31096 1.19275 1.05560 1.08479 1.03732 0.91211 1.24736 0.99834 0.98046 0.98407 1.69663 1.40094 1.17796 1.30629 0.86125 0.82009 0.77580 0.80519 1.20605 1.21885 1.21874 1.21922 0.97481 0.99127 0.98058 1.21819 0.94894 0.85249 0.99624 0.92325 0.92355 0.90671 0.77025 0.77159 0.90538 0.90578 0.88274 0.88138 0.91406 0.89121 0.89341 0.91868 0.90962 0.96485 0.96448 0.78245 0.93567 0.91479 0.90537 0.90092 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.57 10.70 59.85 0.64 1.21 16 2 N -0.75 -4.54 5.72 -72.07 -0.41 -4.95 16 3 C 0.70 7.04 8.57 -86.92 -0.74 6.30 16 4 O -0.59 -8.91 16.34 5.29 0.09 -8.82 16 5 N -0.75 -5.42 5.56 -65.23 -0.36 -5.78 16 6 C 0.15 1.46 4.96 -4.04 -0.02 1.44 16 7 C -0.15 -1.10 4.16 -27.88 -0.12 -1.21 16 8 C 0.52 6.13 7.70 -10.99 -0.08 6.05 16 9 O -0.54 -8.69 15.39 5.56 0.09 -8.61 16 10 N -0.61 -6.87 2.97 -172.74 -0.51 -7.38 16 11 C 0.11 1.46 6.42 -3.71 -0.02 1.44 16 12 C -0.12 -1.87 5.27 -26.45 -0.14 -2.01 16 13 C -0.09 -1.39 2.19 -90.42 -0.20 -1.58 16 14 C 0.16 3.04 5.65 -4.04 -0.02 3.02 16 15 N -0.73 -18.09 5.32 -59.91 -0.32 -18.41 16 16 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 20 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 C -0.13 -1.35 5.37 -26.59 -0.14 -1.49 16 25 C 0.11 0.91 6.34 -3.68 -0.02 0.89 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.40 1.00 8.84 -40.82 -0.36 0.64 16 30 H 0.39 1.36 8.49 -40.82 -0.35 1.01 16 31 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 32 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 33 H 0.10 0.48 7.94 -51.93 -0.41 0.06 16 34 H 0.10 0.53 7.69 -51.93 -0.40 0.13 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.33 7.00 -51.93 -0.36 0.96 16 37 H 0.09 1.56 7.16 -51.93 -0.37 1.19 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.38 9.91 6.85 -40.82 -0.28 9.63 16 43 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 46 H 0.08 0.44 5.93 -51.93 -0.31 0.13 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 379.88 15.07 5.72 5.72 Total: -1.00 -37.26 379.88 -9.01 -46.27 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.88 Total: 5.20 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -1.12 Total: 6.73 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: -0.88 Total: -63.83 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.17 Total: -17.43 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.26 -9.01 -46.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205177425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.786 kcal (2) G-P(sol) polarization free energy of solvation -37.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds