Wall clock time and date at job start Fri Apr 10 2020 18:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34776 * 120.00210 * 2 1 4 4 O 1.21585 * 119.99895 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00148 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00215 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47123 * 179.97438 * 6 5 3 8 8 C 1.50698 * 109.46931 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.41904 * 178.67276 * 13 12 11 15 15 N 1.46500 * 109.47150 * 295.13157 * 14 13 12 16 16 C 1.36934 * 119.99724 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00570 * 359.97438 * 16 15 14 18 18 C 1.38817 * 119.99789 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99915 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47150 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46998 * 120.00159 * 20 18 16 23 23 H 1.48507 * 109.47070 * 240.00019 * 20 18 16 24 24 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 25 25 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 26 26 H 1.08999 * 109.47203 * 300.00334 * 1 2 3 27 27 H 1.09004 * 109.47035 * 59.99625 * 1 2 3 28 28 H 1.08994 * 109.47222 * 179.97438 * 1 2 3 29 29 H 0.97003 * 119.99314 * 180.02562 * 2 1 3 30 30 H 0.97003 * 119.99376 * 0.02562 * 5 3 2 31 31 H 1.08996 * 109.47101 * 60.00019 * 6 5 3 32 32 H 1.09001 * 109.47107 * 300.00020 * 6 5 3 33 33 H 1.09001 * 109.46646 * 59.99879 * 7 6 5 34 34 H 1.09001 * 109.47188 * 300.00022 * 7 6 5 35 35 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 36 36 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 37 37 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 38 38 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 39 39 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 40 40 H 1.09001 * 109.46592 * 55.13132 * 14 13 12 41 41 H 1.08997 * 109.47133 * 175.12697 * 14 13 12 42 42 H 0.96999 * 119.99704 * 359.97438 * 15 14 13 43 43 H 0.97003 * 120.00052 * 179.97438 * 19 18 16 44 44 H 1.08994 * 109.50232 * 301.42239 * 24 13 12 45 45 H 1.09007 * 109.52628 * 181.33900 * 24 13 12 46 46 H 1.08994 * 109.58580 * 353.38021 * 25 10 8 47 47 H 1.09006 * 109.57831 * 113.65514 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2193 2.4358 0.0000 7 6 5.7235 2.1562 -0.0001 8 6 6.4770 3.4613 -0.0001 9 8 5.8706 4.5115 0.0004 10 7 7.8248 3.4612 -0.0008 11 6 8.5734 4.7254 -0.0014 12 6 9.5658 4.7148 1.1656 13 6 10.4434 3.4611 1.0683 14 6 11.4592 3.4611 2.2125 15 7 12.3753 4.5929 2.0523 16 6 13.3760 4.7982 2.9642 17 1 13.4896 4.1260 3.8019 18 6 14.2445 5.8704 2.8121 19 7 14.1064 6.6894 1.7910 20 14 15.6099 6.1500 4.0557 21 1 15.5508 5.0968 5.1010 22 1 16.9249 6.0927 3.3682 23 1 15.4391 7.4834 4.6870 24 6 9.5659 2.2111 1.1655 25 6 8.5734 2.1969 -0.0020 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.9499 -0.8401 -0.0004 30 1 3.9716 0.3270 -0.0013 31 1 3.9563 3.0068 0.8905 32 1 3.9556 3.0080 -0.8895 33 1 5.9867 1.5850 -0.8903 34 1 5.9868 1.5842 0.8896 35 1 9.1157 4.8285 -0.9413 36 1 7.8817 5.5597 0.1147 37 1 10.1919 5.6058 1.1189 38 1 9.0187 4.7030 2.1083 39 1 10.9710 3.4611 0.1145 40 1 10.9346 3.5500 3.1639 41 1 12.0255 2.5299 2.1956 42 1 12.2731 5.1969 1.3002 43 1 14.7130 7.4388 1.6849 44 1 9.0190 2.2228 2.1082 45 1 10.1935 1.3210 1.1200 46 1 7.8818 1.3627 0.1162 47 1 9.1136 2.0931 -0.9430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205177425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:47 Heat of formation + Delta-G solvation = -92.143142 kcal Electronic energy + Delta-G solvation = -25601.016999 eV Core-core repulsion = 21817.427103 eV Total energy + Delta-G solvation = -3783.589896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.38637 -40.85990 -38.97140 -36.58893 -36.34598 -35.55568 -34.47736 -32.72096 -32.19343 -31.32526 -28.33169 -27.46407 -25.60990 -24.96401 -23.68522 -23.13266 -22.05682 -21.37575 -20.14700 -19.45921 -19.08526 -18.26331 -17.17272 -17.08005 -16.79872 -16.67318 -16.39077 -15.65160 -15.49538 -15.37302 -15.32015 -15.18658 -15.10670 -14.56954 -14.34596 -14.06947 -13.91026 -13.77116 -13.49834 -13.13413 -13.01182 -12.92723 -12.77658 -12.75870 -12.46501 -12.16554 -12.09580 -11.95968 -11.65339 -11.51870 -11.40100 -11.36039 -10.93196 -10.80640 -10.44088 -9.79497 -9.63691 -8.97759 -7.95290 -5.23179 1.46763 1.47619 1.57510 1.59028 1.62558 2.13247 2.13587 2.55983 3.32346 3.38587 3.62249 3.74165 3.81732 3.89001 3.98731 4.09237 4.14506 4.32495 4.36438 4.42658 4.48479 4.57099 4.67629 4.68282 4.76110 4.82722 4.86955 4.89837 4.94285 5.00842 5.01070 5.04926 5.14446 5.18821 5.32120 5.41889 5.48341 5.50510 5.57348 5.60783 6.02650 6.27677 6.44733 7.13761 7.16148 7.33970 7.59538 8.12108 8.34040 9.28398 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.038779 B = 0.001930 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.860986 B =14504.926580 C =14731.596841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.735 5.735 3 C 0.691 3.309 4 O -0.646 6.646 5 N -0.727 5.727 6 C 0.159 3.841 7 C -0.134 4.134 8 C 0.510 3.490 9 O -0.594 6.594 10 N -0.606 5.606 11 C 0.117 3.883 12 C -0.115 4.115 13 C -0.085 4.085 14 C 0.155 3.845 15 N -0.745 5.745 16 C -0.244 4.244 17 H 0.075 0.925 18 C -0.077 4.077 19 N -0.969 5.969 20 Si 0.972 3.028 21 H -0.266 1.266 22 H -0.292 1.292 23 H -0.296 1.296 24 C -0.120 4.120 25 C 0.106 3.894 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.116 0.884 29 H 0.418 0.582 30 H 0.419 0.581 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.012 0.988 41 H 0.026 0.974 42 H 0.374 0.626 43 H 0.250 0.750 44 H 0.067 0.933 45 H 0.099 0.901 46 H 0.128 0.872 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.794 -23.214 -6.551 32.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.391 5.391 3 C 0.390 3.610 4 O -0.527 6.527 5 N -0.384 5.384 6 C 0.034 3.966 7 C -0.174 4.174 8 C 0.300 3.700 9 O -0.475 6.475 10 N -0.339 5.339 11 C -0.006 4.006 12 C -0.154 4.154 13 C -0.104 4.104 14 C 0.029 3.971 15 N -0.388 5.388 16 C -0.376 4.376 17 H 0.093 0.907 18 C -0.269 4.269 19 N -0.620 5.620 20 Si 0.801 3.199 21 H -0.190 1.190 22 H -0.219 1.219 23 H -0.223 1.223 24 C -0.159 4.159 25 C -0.015 4.015 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.134 0.866 29 H 0.255 0.745 30 H 0.257 0.743 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.030 0.970 41 H 0.044 0.956 42 H 0.206 0.794 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.117 0.883 46 H 0.146 0.854 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.574 -21.807 -6.388 32.030 hybrid contribution 1.417 0.726 0.497 1.668 sum -21.157 -21.081 -5.892 30.443 Atomic orbital electron populations 1.21527 0.77572 1.04126 1.00982 1.44788 1.08167 1.06746 1.79432 1.16301 0.82416 0.84497 0.77780 1.90933 1.69142 1.32793 1.59865 1.44749 1.03909 1.10066 1.79681 1.20610 0.90013 0.84627 1.01368 1.21787 0.92258 0.94930 1.08406 1.21092 0.82113 0.91830 0.75005 1.90731 1.68571 1.35930 1.52235 1.48246 1.05248 1.08224 1.72142 1.21446 0.93795 0.86846 0.98505 1.21812 0.96876 0.98773 0.97893 1.21284 0.95178 0.95530 0.98423 1.20875 0.90353 0.89759 0.96129 1.42615 1.34392 1.31528 1.30251 1.19688 1.05821 1.08109 1.03994 0.90729 1.25554 1.02563 0.98290 1.00486 1.69818 1.41188 1.18425 1.32583 0.85090 0.78897 0.77360 0.78517 1.19008 1.21924 1.22313 1.21898 0.97471 0.97255 0.99260 1.22113 0.95242 0.84918 0.99248 0.93869 0.93781 0.86586 0.74547 0.74344 0.93768 0.93415 0.84239 0.84663 0.90675 0.91252 0.92845 0.93036 0.91268 0.97026 0.95632 0.79383 0.94085 0.91424 0.88276 0.85424 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.94 10.70 127.77 1.37 2.31 16 2 N -0.73 -7.28 5.72 -500.19 -2.86 -10.14 16 3 C 0.69 13.23 8.57 179.05 1.53 14.76 16 4 O -0.65 -20.36 16.34 -3.98 -0.07 -20.42 16 5 N -0.73 -8.86 5.56 -478.54 -2.66 -11.52 16 6 C 0.16 2.89 4.96 86.38 0.43 3.31 16 7 C -0.13 -1.42 4.16 29.85 0.12 -1.30 16 8 C 0.51 11.27 7.70 87.66 0.67 11.95 16 9 O -0.59 -19.72 15.39 -3.03 -0.05 -19.77 16 10 N -0.61 -12.39 2.97 -818.81 -2.43 -14.82 16 11 C 0.12 3.15 6.42 86.36 0.55 3.70 16 12 C -0.12 -3.57 5.27 30.78 0.16 -3.41 16 13 C -0.09 -2.40 2.19 -10.66 -0.02 -2.42 16 14 C 0.16 5.86 5.65 86.38 0.49 6.35 16 15 N -0.74 -37.35 5.32 -343.45 -1.83 -39.18 16 16 C -0.24 -13.64 9.99 84.04 0.84 -12.80 16 17 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 18 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 19 N -0.97 -59.55 13.06 21.65 0.28 -59.27 16 20 Si 0.97 46.29 29.55 68.60 2.03 48.32 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 24 C -0.12 -2.10 5.37 30.69 0.16 -1.93 16 25 C 0.11 1.29 6.34 86.38 0.55 1.84 16 26 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.42 0.59 8.84 -92.71 -0.82 -0.23 16 30 H 0.42 1.03 8.49 -92.71 -0.79 0.24 16 31 H 0.04 1.09 8.10 -2.39 -0.02 1.07 16 32 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 33 H 0.14 0.47 7.94 -2.39 -0.02 0.45 16 34 H 0.14 0.61 7.69 -2.39 -0.02 0.59 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 2.16 7.00 -2.39 -0.02 2.15 16 37 H 0.05 2.01 7.16 -2.39 -0.02 2.00 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.37 19.96 6.85 -92.71 -0.63 19.32 16 43 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 46 H 0.13 0.45 5.93 -2.39 -0.01 0.44 16 47 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -87.86 379.88 -1.50 -89.37 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -1.25 Total: 19.02 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 7.33 Total: 18.41 kcal Atomic # 7 Polarization: -125.43 SS G_CDS: -9.50 Total: -134.93 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -0.11 Total: -40.19 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -87.86 -1.50 -89.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205177425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.774 kcal (2) G-P(sol) polarization free energy of solvation -87.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds