Wall clock time and date at job start Fri Apr 10 2020 18:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99905 * 2 1 4 4 C 1.52998 * 109.47298 * 179.97438 * 3 2 1 5 5 C 1.50693 * 110.45556 * 57.34314 * 4 3 2 6 6 O 1.21285 * 120.00189 * 244.14546 * 5 4 3 7 7 N 1.34775 * 120.00301 * 64.14449 * 5 4 3 8 8 C 1.46924 * 120.62765 * 5.46530 * 7 5 4 9 9 C 1.53191 * 108.77362 * 233.58436 * 8 7 5 10 10 C 1.53037 * 109.31642 * 305.36344 * 9 8 7 11 11 C 1.53041 * 109.53636 * 61.36107 * 10 9 8 12 12 H 1.09004 * 109.49064 * 58.62477 * 11 10 9 13 13 N 1.46494 * 109.49759 * 178.68417 * 11 10 9 14 14 C 1.36943 * 120.00433 * 275.00629 * 13 11 10 15 15 H 1.07997 * 119.99550 * 359.97438 * 14 13 11 16 16 C 1.38810 * 119.99978 * 180.02562 * 14 13 11 17 17 N 1.31620 * 120.00158 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99780 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47060 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47304 * 119.99898 * 18 16 14 21 21 H 1.48501 * 109.47052 * 240.00111 * 18 16 14 22 22 C 1.46920 * 120.63608 * 185.18260 * 7 5 4 23 23 C 1.54508 * 110.51031 * 179.97438 * 4 3 2 24 24 C 1.54481 * 104.06427 * 118.64598 * 23 4 3 25 25 O 1.44431 * 104.80502 * 23.97501 * 24 23 4 26 26 C 1.44649 * 105.36454 * 319.56992 * 25 24 23 27 27 H 1.09000 * 109.47099 * 60.00184 * 1 2 3 28 28 H 1.08997 * 109.47450 * 299.99934 * 1 2 3 29 29 H 1.09007 * 109.47051 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47173 * 300.00135 * 3 2 1 31 31 H 1.09001 * 109.46606 * 59.99860 * 3 2 1 32 32 H 1.09001 * 109.59029 * 353.36737 * 8 7 5 33 33 H 1.09004 * 109.59096 * 113.79896 * 8 7 5 34 34 H 1.09001 * 109.50031 * 65.31794 * 9 8 7 35 35 H 1.09006 * 109.49735 * 185.41279 * 9 8 7 36 36 H 1.08996 * 109.46539 * 181.38772 * 10 9 8 37 37 H 1.09001 * 109.45551 * 301.36178 * 10 9 8 38 38 H 0.97005 * 119.99804 * 95.00178 * 13 11 10 39 39 H 0.97004 * 119.99399 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.58706 * 246.20654 * 22 7 5 41 41 H 1.09008 * 109.58234 * 6.62401 * 22 7 5 42 42 H 1.09004 * 110.51176 * 237.28749 * 23 4 3 43 43 H 1.08996 * 110.51214 * 359.86536 * 23 4 3 44 44 H 1.09000 * 110.37319 * 142.80611 * 24 23 4 45 45 H 1.08998 * 110.37477 * 265.14995 * 24 23 4 46 46 H 1.08994 * 110.33957 * 281.58255 * 26 25 24 47 47 H 1.09005 * 110.50093 * 159.18381 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.0008 0.3835 -1.1877 6 8 4.5596 -0.6799 -1.0209 7 7 3.7960 0.8485 -2.4360 8 6 3.2293 2.1866 -2.6528 9 6 2.0085 2.0625 -3.5698 10 6 2.4123 1.3353 -4.8545 11 6 2.9047 -0.0727 -4.5124 12 1 2.1152 -0.6186 -3.9958 13 7 3.2614 -0.7790 -5.7453 14 6 2.2962 -1.4334 -6.4633 15 1 1.2721 -1.4291 -6.1204 16 6 2.6343 -2.1030 -7.6313 17 7 3.8825 -2.1086 -8.0489 18 14 1.3178 -2.9962 -8.6103 19 1 0.0056 -2.8400 -7.9327 20 1 1.2413 -2.4207 -9.9770 21 1 1.6600 -4.4385 -8.6989 22 6 4.1408 0.0295 -3.6060 23 6 4.1893 2.5847 0.0000 24 6 4.9985 2.6216 1.3154 25 8 5.2539 1.2355 1.6306 26 6 4.0266 0.5382 1.3148 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8465 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 2.9263 2.6144 -1.6971 33 1 3.9754 2.8278 -3.1224 34 1 1.2277 1.4967 -3.0616 35 1 1.6361 3.0568 -3.8164 36 1 1.5513 1.2674 -5.5194 37 1 3.2105 1.8886 -5.3493 38 1 4.1813 -0.7831 -6.0531 39 1 4.1186 -2.5763 -8.8653 40 1 4.9597 0.4982 -4.1517 41 1 4.4396 -0.9667 -3.2794 42 1 4.8511 2.6967 -0.8588 43 1 3.4260 3.3627 -0.0032 44 1 5.9369 3.1565 1.1687 45 1 4.4139 3.0893 2.1076 46 1 3.2929 0.6848 2.1073 47 1 4.2186 -0.5245 1.1662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208779659.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:01 Heat of formation + Delta-G solvation = -127.053555 kcal Electronic energy + Delta-G solvation = -28250.597922 eV Core-core repulsion = 24433.201446 eV Total energy + Delta-G solvation = -3817.396476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.20247 -39.88895 -38.61686 -38.49767 -36.34572 -34.58270 -33.45254 -32.77745 -30.59049 -30.06197 -27.93778 -26.77703 -26.22105 -25.84636 -24.00356 -23.43692 -22.76835 -21.25870 -19.96891 -19.18249 -18.43884 -17.62474 -17.24728 -17.14247 -16.78922 -16.59084 -16.33094 -15.99212 -15.88301 -15.51433 -15.30090 -15.19387 -14.78789 -14.71025 -14.45896 -14.03869 -13.89914 -13.57265 -13.29942 -12.96528 -12.89948 -12.77032 -12.65879 -12.49365 -12.30460 -12.23654 -12.07444 -11.98787 -11.92169 -11.81775 -11.71253 -11.54730 -10.95555 -10.89911 -10.73338 -10.48464 -9.69994 -9.05135 -7.97551 -5.27416 1.44334 1.46421 1.55119 1.56432 1.87330 2.54066 2.62713 2.99354 3.26366 3.35779 3.52593 3.68543 3.76137 3.89135 3.98264 4.01429 4.05483 4.13691 4.24550 4.29556 4.32892 4.34810 4.45517 4.51222 4.55072 4.58932 4.62871 4.71813 4.75411 4.79885 4.85410 4.86392 4.88094 4.90032 4.99274 5.06661 5.14000 5.37980 5.41198 5.49574 5.57984 5.81431 6.18502 6.24010 6.41638 7.12817 7.29744 8.02237 8.26826 9.26083 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.019928 B = 0.003667 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.690605 B = 7633.697527 C = 7956.441396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.419 6.419 3 C 0.068 3.932 4 C -0.106 4.106 5 C 0.528 3.472 6 O -0.588 6.588 7 N -0.600 5.600 8 C 0.091 3.909 9 C -0.124 4.124 10 C -0.126 4.126 11 C 0.170 3.830 12 H 0.028 0.972 13 N -0.736 5.736 14 C -0.239 4.239 15 H 0.073 0.927 16 C -0.074 4.074 17 N -0.969 5.969 18 Si 0.973 3.027 19 H -0.266 1.266 20 H -0.289 1.289 21 H -0.296 1.296 22 C 0.120 3.880 23 C -0.141 4.141 24 C 0.038 3.962 25 O -0.403 6.403 26 C 0.070 3.930 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.109 0.891 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.373 0.627 39 H 0.251 0.749 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.138 0.862 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.492 18.741 20.831 28.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.339 6.339 3 C -0.008 4.008 4 C -0.110 4.110 5 C 0.317 3.683 6 O -0.468 6.468 7 N -0.332 5.332 8 C -0.029 4.029 9 C -0.163 4.163 10 C -0.167 4.167 11 C 0.061 3.939 12 H 0.046 0.954 13 N -0.377 5.377 14 C -0.370 4.370 15 H 0.091 0.909 16 C -0.266 4.266 17 N -0.619 5.619 18 Si 0.802 3.198 19 H -0.190 1.190 20 H -0.216 1.216 21 H -0.223 1.223 22 C -0.004 4.004 23 C -0.179 4.179 24 C -0.038 4.038 25 O -0.322 6.322 26 C -0.007 4.007 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.140 0.860 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.204 0.796 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.156 0.844 44 H 0.123 0.877 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.074 17.860 20.956 28.196 hybrid contribution -0.256 -1.167 -1.409 1.847 sum -6.330 16.693 19.546 26.472 Atomic orbital electron populations 1.22894 0.79098 1.03387 1.01400 1.87968 1.21762 1.28483 1.95682 1.22955 0.88398 0.85603 1.03887 1.22228 0.97234 0.97815 0.93718 1.20786 0.77460 0.85444 0.84615 1.90659 1.44577 1.25691 1.85825 1.48020 1.62755 1.18090 1.04364 1.22483 0.96136 0.82037 1.02272 1.21937 0.97347 1.02138 0.94874 1.22048 1.00682 0.96046 0.97874 1.20682 0.94197 0.92853 0.86142 0.95401 1.42513 1.08291 1.61953 1.24901 1.19574 0.90613 1.24063 1.02785 0.90885 1.25560 0.98393 1.02684 0.99956 1.69831 1.18041 1.49089 1.24979 0.85081 0.78795 0.77564 0.78368 1.19027 1.21616 1.22299 1.21635 0.97287 0.95274 0.86183 1.23301 1.01110 0.93230 1.00231 1.23746 1.01569 0.82878 0.95629 1.89190 1.34959 1.21055 1.86980 1.23338 0.86666 0.97337 0.93319 0.93283 0.91375 0.90121 0.90182 0.88165 0.86010 0.89368 0.92070 0.87307 0.93385 0.92423 0.79561 0.93971 0.91416 0.92881 0.89913 0.84436 0.87734 0.88912 0.88809 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.70 16 2 O -0.42 -9.88 10.10 -148.98 -1.50 -11.39 16 3 C 0.07 1.06 4.28 71.98 0.31 1.37 16 4 C -0.11 -2.22 0.49 -51.91 -0.03 -2.24 16 5 C 0.53 17.05 5.98 87.66 0.52 17.57 16 6 O -0.59 -25.69 14.87 -3.05 -0.05 -25.74 16 7 N -0.60 -17.76 2.95 -818.09 -2.41 -20.17 16 8 C 0.09 1.70 4.35 86.36 0.38 2.07 16 9 C -0.12 -2.57 5.86 30.67 0.18 -2.39 16 10 C -0.13 -4.10 5.46 30.62 0.17 -3.94 16 11 C 0.17 7.05 2.94 45.21 0.13 7.18 16 12 H 0.03 1.27 8.08 -2.38 -0.02 1.25 16 13 N -0.74 -38.50 5.13 -321.90 -1.65 -40.15 16 14 C -0.24 -13.57 9.93 84.03 0.83 -12.74 16 15 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 16 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 17 N -0.97 -60.45 13.06 21.65 0.28 -60.16 16 18 Si 0.97 46.91 29.55 68.60 2.03 48.94 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 21 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 22 C 0.12 4.61 5.92 86.51 0.51 5.13 16 23 C -0.14 -1.72 4.56 31.61 0.14 -1.58 16 24 C 0.04 0.50 7.64 72.49 0.55 1.06 16 25 O -0.40 -9.95 11.65 -148.98 -1.74 -11.69 16 26 C 0.07 1.69 6.43 72.48 0.47 2.16 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.08 1.01 4.99 -2.39 -0.01 1.00 16 31 H 0.10 0.82 8.09 -2.39 -0.02 0.80 16 32 H 0.12 1.37 2.84 -2.39 -0.01 1.37 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.06 1.32 7.73 -2.39 -0.02 1.30 16 35 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.37 20.89 7.80 -92.70 -0.72 20.17 16 39 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 40 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.05 2.43 7.04 -2.38 -0.02 2.42 16 42 H 0.08 1.17 6.74 -2.38 -0.02 1.15 16 43 H 0.14 0.40 7.18 -2.39 -0.02 0.39 16 44 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.09 1.67 7.83 -2.39 -0.02 1.66 16 47 H 0.07 2.34 6.83 -2.38 -0.02 2.33 16 Total: -1.00 -82.27 361.68 1.10 -81.17 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.25 Total: 27.67 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 5.89 Total: 11.51 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -3.78 Total: -120.48 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -3.29 Total: -48.82 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -82.27 1.10 -81.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208779659.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.879 kcal (2) G-P(sol) polarization free energy of solvation -82.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds