Wall clock time and date at job start Fri Apr 10 2020 18:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 N 1.46498 * 109.47120 * 240.00144 * 2 1 3 5 5 C 1.36935 * 120.00239 * 84.99640 * 4 2 1 6 6 H 1.08004 * 120.00069 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00368 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 359.72375 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72253 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72375 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72186 * 9 7 5 13 13 C 1.52998 * 109.47443 * 120.00087 * 2 1 3 14 14 H 1.09001 * 109.47463 * 185.00072 * 13 2 1 15 15 C 1.52999 * 109.47112 * 64.99513 * 13 2 1 16 16 N 1.46504 * 109.47065 * 304.99901 * 13 2 1 17 17 C 1.34771 * 119.99931 * 205.00047 * 16 13 2 18 18 O 1.21273 * 120.00187 * 359.97438 * 17 16 13 19 19 C 1.50704 * 119.99829 * 179.97438 * 17 16 13 20 20 N 1.46896 * 109.47203 * 179.97438 * 19 17 16 21 21 C 1.47194 * 111.00283 * 188.93724 * 20 19 17 22 22 C 1.52988 * 108.71789 * 167.62314 * 21 20 19 23 23 N 1.46012 * 110.04189 * 50.30546 * 22 21 20 24 24 C 1.46498 * 118.53371 * 161.86262 * 23 22 21 25 25 C 1.33713 * 122.92638 * 341.83762 * 23 22 21 26 26 O 1.21279 * 118.62059 * 181.68441 * 25 23 22 27 27 C 1.46901 * 110.99775 * 66.04485 * 20 19 17 28 28 H 1.09004 * 109.47411 * 59.99789 * 1 2 3 29 29 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46933 * 300.00179 * 1 2 3 31 31 H 0.97004 * 119.99747 * 265.00379 * 4 2 1 32 32 H 0.97000 * 120.00481 * 0.27542 * 8 7 5 33 33 H 1.08997 * 109.47031 * 60.00462 * 15 13 2 34 34 H 1.09004 * 109.47231 * 179.97438 * 15 13 2 35 35 H 1.09001 * 109.47413 * 300.00590 * 15 13 2 36 36 H 0.97001 * 119.99721 * 25.00195 * 16 13 2 37 37 H 1.08996 * 109.47221 * 300.00086 * 19 17 16 38 38 H 1.08998 * 109.47057 * 59.99882 * 19 17 16 39 39 H 1.08999 * 109.59111 * 287.41108 * 21 20 19 40 40 H 1.09004 * 109.59056 * 47.86101 * 21 20 19 41 41 H 1.09004 * 109.37676 * 290.13228 * 22 21 20 42 42 H 1.09005 * 109.28363 * 170.42477 * 22 21 20 43 43 H 1.09007 * 109.46878 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.47417 * 299.97802 * 24 23 22 45 45 H 1.09001 * 109.47516 * 59.98239 * 24 23 22 46 46 H 1.09001 * 109.39156 * 293.81994 * 27 20 19 47 47 H 1.08997 * 109.38445 * 53.61582 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4242 7 6 2.6112 -0.6619 -3.5093 8 7 2.9290 -1.9378 -3.4489 9 14 2.7902 0.2701 -5.1183 10 1 3.3049 -0.6469 -6.1669 11 1 1.4669 0.8022 -5.5320 12 1 3.7411 1.3958 -4.9350 13 6 2.0400 -0.7212 1.2492 14 1 3.1263 -0.6443 1.2951 15 6 1.6352 -2.1954 1.1880 16 7 1.4559 -0.1036 2.4424 17 6 2.0914 -0.1938 3.6275 18 8 3.1464 -0.7865 3.7063 19 6 1.4908 0.4421 4.8547 20 7 2.3680 0.2039 6.0087 21 6 1.7176 0.6226 7.2610 22 6 2.5258 0.0774 8.4401 23 7 3.9379 0.4105 8.2754 24 6 4.8131 0.3476 9.4486 25 6 4.4678 0.7698 7.1016 26 8 5.6574 0.9999 7.0473 27 6 3.6514 0.9001 5.8469 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.2489 -1.6318 -1.1526 32 1 2.8364 -2.4217 -2.6134 33 1 2.0698 -2.6550 0.3003 34 1 1.9990 -2.7094 2.0777 35 1 0.5489 -2.2724 1.1420 36 1 0.6118 0.3701 2.3794 37 1 1.3852 1.5148 4.6934 38 1 0.5108 0.0055 5.0475 39 1 1.6869 1.7110 7.3107 40 1 0.7038 0.2240 7.2974 41 1 2.4128 -1.0058 8.4860 42 1 2.1555 0.5191 9.3653 43 1 5.8277 0.6224 9.1600 44 1 4.4516 1.0396 10.2092 45 1 4.8114 -0.6661 9.8493 46 1 4.1983 0.4615 5.0122 47 1 3.4676 1.9552 5.6446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485164884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:07 Heat of formation + Delta-G solvation = -34.271947 kcal Electronic energy + Delta-G solvation = -26560.498447 eV Core-core repulsion = 22779.418034 eV Total energy + Delta-G solvation = -3781.080413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.88180 -39.76627 -37.68605 -36.82846 -35.45397 -34.14659 -32.05151 -30.64715 -29.92444 -29.05274 -28.09650 -26.73598 -25.07888 -24.27992 -23.38200 -22.71220 -20.49460 -19.38172 -19.00016 -17.76894 -17.50497 -17.03474 -16.87149 -16.37766 -15.79896 -15.38643 -15.13829 -14.82021 -14.64689 -14.35238 -14.24054 -13.76028 -13.62062 -13.39048 -13.05901 -13.01782 -12.78475 -12.63110 -12.48242 -12.26931 -12.07546 -11.86556 -11.80125 -11.63711 -11.55124 -10.84435 -10.62030 -10.44479 -10.23361 -10.12341 -9.99392 -9.72690 -9.22950 -9.07191 -8.97386 -8.93180 -8.78389 -7.09479 -6.12369 -3.13493 2.36880 2.64351 2.66512 2.92323 3.50305 3.54025 3.55124 3.71884 4.17280 4.26400 4.53050 4.65824 4.66945 4.75438 4.89744 4.94912 5.01481 5.03560 5.07368 5.15543 5.26693 5.37322 5.39166 5.47567 5.50380 5.59130 5.62911 5.69849 5.95122 6.00448 6.03780 6.17133 6.23767 6.28158 6.35170 6.43614 6.50946 6.61371 6.80083 6.96692 7.07887 7.60171 7.77585 7.88221 8.31575 8.72964 9.18720 10.04880 10.18718 11.35629 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.026891 B = 0.002449 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.992499 B =11430.496488 C =11881.418209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.174 3.826 3 H 0.052 0.948 4 N -0.731 5.731 5 C -0.333 4.333 6 H 0.065 0.935 7 C -0.044 4.044 8 N -0.941 5.941 9 Si 1.080 2.920 10 H -0.285 1.285 11 H -0.295 1.295 12 H -0.295 1.295 13 C 0.136 3.864 14 H 0.087 0.913 15 C -0.158 4.158 16 N -0.720 5.720 17 C 0.509 3.491 18 O -0.522 6.522 19 C 0.034 3.966 20 N -0.514 5.514 21 C 0.033 3.967 22 C 0.121 3.879 23 N -0.611 5.611 24 C 0.073 3.927 25 C 0.527 3.473 26 O -0.548 6.548 27 C 0.034 3.966 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.033 0.967 31 H 0.370 0.630 32 H 0.255 0.745 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.397 0.603 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.048 0.952 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.137 0.863 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.926 6.304 26.392 28.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.063 3.937 3 H 0.070 0.930 4 N -0.376 5.376 5 C -0.464 4.464 6 H 0.083 0.917 7 C -0.241 4.241 8 N -0.586 5.586 9 Si 0.911 3.089 10 H -0.210 1.210 11 H -0.223 1.223 12 H -0.222 1.222 13 C 0.032 3.968 14 H 0.105 0.895 15 C -0.216 4.216 16 N -0.373 5.373 17 C 0.293 3.707 18 O -0.398 6.398 19 C -0.097 4.097 20 N -0.240 5.240 21 C -0.095 4.095 22 C -0.002 4.002 23 N -0.345 5.345 24 C -0.070 4.070 25 C 0.315 3.685 26 O -0.425 6.425 27 C -0.096 4.096 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.205 0.795 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.233 0.767 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.066 0.934 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.154 0.846 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.005 5.573 24.784 26.103 hybrid contribution -1.281 0.947 1.602 2.259 sum -7.286 6.520 26.386 28.139 Atomic orbital electron populations 1.22516 0.99259 1.01176 0.99800 1.20288 0.92142 0.95533 0.85741 0.93023 1.42454 1.79345 1.09946 1.05810 1.20009 1.42342 0.95125 0.88883 0.91742 1.25783 0.99188 0.97506 1.01669 1.70887 1.50885 1.08415 1.28461 0.83239 0.75850 0.74308 0.75510 1.21013 1.22289 1.22243 1.21323 0.99023 0.92786 0.83708 0.89474 1.22125 1.01469 0.95906 1.02129 1.46207 1.25890 1.56926 1.08307 1.20360 0.85351 0.80730 0.84239 1.90702 1.22192 1.41862 1.85024 1.22078 0.97523 1.00258 0.89847 1.62165 1.03187 1.57353 1.01270 1.22572 0.98839 0.98944 0.89135 1.21486 0.79605 1.01275 0.97824 1.47308 1.09942 1.68029 1.09188 1.21738 0.96786 1.01513 0.86966 1.20124 0.88232 0.75737 0.84408 1.90721 1.15674 1.50771 1.85317 1.22552 0.90772 0.98602 0.97696 0.92351 0.92926 0.94785 0.79513 0.93374 0.91131 0.92819 0.92480 0.76731 0.91363 0.87204 0.93398 0.88203 0.90606 0.90114 0.89140 0.92282 0.92130 0.84570 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 9.01 37.16 0.33 -2.37 16 2 C 0.17 3.27 2.93 -67.93 -0.20 3.07 16 3 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 4 N -0.73 -17.72 5.03 -53.43 -0.27 -17.99 16 5 C -0.33 -9.16 9.93 -15.06 -0.15 -9.31 16 6 H 0.06 1.74 7.83 -52.48 -0.41 1.33 16 7 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 8 N -0.94 -28.96 13.70 55.49 0.76 -28.20 16 9 Si 1.08 25.76 29.92 -169.99 -5.09 20.67 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.30 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.30 -6.76 7.11 56.52 0.40 -6.35 16 13 C 0.14 2.26 2.62 -67.93 -0.18 2.09 16 14 H 0.09 1.70 7.58 -51.93 -0.39 1.31 16 15 C -0.16 -2.59 9.00 37.16 0.33 -2.25 16 16 N -0.72 -9.01 4.99 -53.81 -0.27 -9.28 16 17 C 0.51 6.55 7.55 -10.99 -0.08 6.46 16 18 O -0.52 -9.07 13.97 5.56 0.08 -8.99 16 19 C 0.03 0.28 5.44 -4.98 -0.03 0.25 16 20 N -0.51 -4.89 4.47 -237.54 -1.06 -5.95 16 21 C 0.03 0.19 5.60 -3.67 -0.02 0.17 16 22 C 0.12 0.73 6.64 -4.31 -0.03 0.70 16 23 N -0.61 -5.84 3.23 -182.46 -0.59 -6.43 16 24 C 0.07 0.57 10.55 59.85 0.63 1.20 16 25 C 0.53 6.84 7.57 -11.67 -0.09 6.75 16 26 O -0.55 -9.16 16.07 5.56 0.09 -9.08 16 27 C 0.03 0.40 5.14 -5.19 -0.03 0.37 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.86 6.56 -51.93 -0.34 0.52 16 30 H 0.03 0.41 6.29 -51.93 -0.33 0.08 16 31 H 0.37 9.26 4.60 -40.82 -0.19 9.07 16 32 H 0.26 7.72 6.77 -40.82 -0.28 7.44 16 33 H 0.07 1.29 6.29 -51.93 -0.33 0.96 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 36 H 0.40 3.87 6.58 -40.82 -0.27 3.60 16 37 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 38 H 0.11 0.62 7.93 -51.93 -0.41 0.21 16 39 H 0.05 0.25 8.08 -51.93 -0.42 -0.17 16 40 H 0.10 0.34 7.91 -51.93 -0.41 -0.07 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.28 8.13 -51.93 -0.42 -0.15 16 43 H 0.09 0.90 6.67 -51.93 -0.35 0.55 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.14 2.05 6.00 -51.93 -0.31 1.74 16 47 H 0.07 0.69 8.05 -51.93 -0.42 0.28 16 LS Contribution 368.87 15.07 5.56 5.56 Total: -1.00 -36.51 368.87 -7.74 -44.26 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -7.36 Total: 9.65 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 0.40 Total: 5.78 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: -1.43 Total: -67.86 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.17 Total: -18.07 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.09 Total: 20.67 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.51 -7.74 -44.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485164884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.983 kcal (2) G-P(sol) polarization free energy of solvation -36.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds