Wall clock time and date at job start Fri Apr 10 2020 18:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 N 1.46498 * 109.47120 * 240.00144 * 2 1 3 5 5 C 1.36935 * 120.00239 * 84.99640 * 4 2 1 6 6 H 1.08004 * 120.00069 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00368 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 359.72375 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72253 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72375 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72186 * 9 7 5 13 13 C 1.52998 * 109.47443 * 120.00087 * 2 1 3 14 14 H 1.09001 * 109.47463 * 185.00072 * 13 2 1 15 15 C 1.52999 * 109.47112 * 64.99513 * 13 2 1 16 16 N 1.46504 * 109.47065 * 304.99901 * 13 2 1 17 17 C 1.34771 * 119.99931 * 205.00047 * 16 13 2 18 18 O 1.21273 * 120.00187 * 359.97438 * 17 16 13 19 19 C 1.50704 * 119.99829 * 179.97438 * 17 16 13 20 20 N 1.46896 * 109.47203 * 179.97438 * 19 17 16 21 21 C 1.47194 * 111.00283 * 188.93724 * 20 19 17 22 22 C 1.52988 * 108.71789 * 167.62314 * 21 20 19 23 23 N 1.46012 * 110.04189 * 50.30546 * 22 21 20 24 24 C 1.46498 * 118.53371 * 161.86262 * 23 22 21 25 25 C 1.33713 * 122.92638 * 341.83762 * 23 22 21 26 26 O 1.21279 * 118.62059 * 181.68441 * 25 23 22 27 27 C 1.46901 * 110.99775 * 66.04485 * 20 19 17 28 28 H 1.09004 * 109.47411 * 59.99789 * 1 2 3 29 29 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46933 * 300.00179 * 1 2 3 31 31 H 0.97004 * 119.99747 * 265.00379 * 4 2 1 32 32 H 0.97000 * 120.00481 * 0.27542 * 8 7 5 33 33 H 1.08997 * 109.47031 * 60.00462 * 15 13 2 34 34 H 1.09004 * 109.47231 * 179.97438 * 15 13 2 35 35 H 1.09001 * 109.47413 * 300.00590 * 15 13 2 36 36 H 0.97001 * 119.99721 * 25.00195 * 16 13 2 37 37 H 1.08996 * 109.47221 * 300.00086 * 19 17 16 38 38 H 1.08998 * 109.47057 * 59.99882 * 19 17 16 39 39 H 1.08999 * 109.59111 * 287.41108 * 21 20 19 40 40 H 1.09004 * 109.59056 * 47.86101 * 21 20 19 41 41 H 1.09004 * 109.37676 * 290.13228 * 22 21 20 42 42 H 1.09005 * 109.28363 * 170.42477 * 22 21 20 43 43 H 1.09007 * 109.46878 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.47417 * 299.97802 * 24 23 22 45 45 H 1.09001 * 109.47516 * 59.98239 * 24 23 22 46 46 H 1.09001 * 109.39156 * 293.81994 * 27 20 19 47 47 H 1.08997 * 109.38445 * 53.61582 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4242 7 6 2.6112 -0.6619 -3.5093 8 7 2.9290 -1.9378 -3.4489 9 14 2.7902 0.2701 -5.1183 10 1 3.3049 -0.6469 -6.1669 11 1 1.4669 0.8022 -5.5320 12 1 3.7411 1.3958 -4.9350 13 6 2.0400 -0.7212 1.2492 14 1 3.1263 -0.6443 1.2951 15 6 1.6352 -2.1954 1.1880 16 7 1.4559 -0.1036 2.4424 17 6 2.0914 -0.1938 3.6275 18 8 3.1464 -0.7865 3.7063 19 6 1.4908 0.4421 4.8547 20 7 2.3680 0.2039 6.0087 21 6 1.7176 0.6226 7.2610 22 6 2.5258 0.0774 8.4401 23 7 3.9379 0.4105 8.2754 24 6 4.8131 0.3476 9.4486 25 6 4.4678 0.7698 7.1016 26 8 5.6574 0.9999 7.0473 27 6 3.6514 0.9001 5.8469 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.2489 -1.6318 -1.1526 32 1 2.8364 -2.4217 -2.6134 33 1 2.0698 -2.6550 0.3003 34 1 1.9990 -2.7094 2.0777 35 1 0.5489 -2.2724 1.1420 36 1 0.6118 0.3701 2.3794 37 1 1.3852 1.5148 4.6934 38 1 0.5108 0.0055 5.0475 39 1 1.6869 1.7110 7.3107 40 1 0.7038 0.2240 7.2974 41 1 2.4128 -1.0058 8.4860 42 1 2.1555 0.5191 9.3653 43 1 5.8277 0.6224 9.1600 44 1 4.4516 1.0396 10.2092 45 1 4.8114 -0.6661 9.8493 46 1 4.1983 0.4615 5.0122 47 1 3.4676 1.9552 5.6446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485164884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:06 Heat of formation + Delta-G solvation = -64.344455 kcal Electronic energy + Delta-G solvation = -26561.802489 eV Core-core repulsion = 22779.418034 eV Total energy + Delta-G solvation = -3782.384454 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.72251 -40.86080 -38.84124 -37.96950 -36.28879 -35.79057 -33.65951 -31.54628 -30.90935 -30.15451 -29.72897 -27.49836 -26.04527 -25.79831 -24.86475 -23.59421 -21.59371 -20.79748 -19.71723 -19.52994 -18.65282 -17.89172 -17.75930 -17.19447 -17.07853 -16.42257 -16.35649 -15.95832 -15.71892 -15.65367 -15.41603 -15.21365 -14.68225 -14.62517 -14.23983 -14.04869 -13.59494 -13.57108 -13.40764 -13.28692 -13.17354 -13.08558 -12.88756 -12.66199 -12.57636 -12.35755 -12.27178 -11.99901 -11.86368 -11.76102 -11.27203 -11.10761 -10.94589 -10.76715 -10.10228 -9.79414 -9.50393 -9.14177 -8.37983 -5.32469 1.41998 1.58312 1.68052 1.68595 1.84432 1.92695 2.04114 2.70695 2.77264 3.40989 3.46718 3.70693 3.78844 3.80512 3.87631 3.99961 4.01250 4.23923 4.24890 4.28260 4.38430 4.41498 4.52457 4.54600 4.60603 4.61486 4.65292 4.74524 4.81075 4.89202 4.90724 4.96258 4.99166 5.10978 5.19439 5.33113 5.50977 5.56593 5.58856 5.62487 5.84376 6.29638 6.49919 6.63057 6.99516 7.09765 7.34325 8.00118 8.10663 9.13654 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.026891 B = 0.002449 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.992499 B =11430.496488 C =11881.418209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.170 3.830 3 H 0.043 0.957 4 N -0.747 5.747 5 C -0.326 4.326 6 H 0.069 0.931 7 C -0.108 4.108 8 N -0.977 5.977 9 Si 1.127 2.873 10 H -0.296 1.296 11 H -0.274 1.274 12 H -0.281 1.281 13 C 0.151 3.849 14 H 0.049 0.951 15 C -0.148 4.148 16 N -0.706 5.706 17 C 0.502 3.498 18 O -0.574 6.574 19 C 0.044 3.956 20 N -0.532 5.532 21 C 0.034 3.966 22 C 0.112 3.888 23 N -0.606 5.606 24 C 0.069 3.931 25 C 0.515 3.485 26 O -0.603 6.603 27 C 0.041 3.959 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.362 0.638 32 H 0.243 0.757 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.415 0.585 37 H 0.098 0.902 38 H 0.151 0.849 39 H 0.061 0.939 40 H 0.135 0.865 41 H 0.077 0.923 42 H 0.118 0.882 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.474 7.978 28.780 31.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.061 3.939 3 H 0.061 0.939 4 N -0.392 5.392 5 C -0.458 4.458 6 H 0.087 0.913 7 C -0.298 4.298 8 N -0.625 5.625 9 Si 0.952 3.048 10 H -0.222 1.222 11 H -0.200 1.200 12 H -0.207 1.207 13 C 0.045 3.955 14 H 0.067 0.933 15 C -0.206 4.206 16 N -0.362 5.362 17 C 0.290 3.710 18 O -0.453 6.453 19 C -0.086 4.086 20 N -0.259 5.259 21 C -0.093 4.093 22 C -0.009 4.009 23 N -0.338 5.338 24 C -0.073 4.073 25 C 0.304 3.696 26 O -0.485 6.485 27 C -0.089 4.089 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.196 0.804 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.254 0.746 37 H 0.116 0.884 38 H 0.168 0.832 39 H 0.079 0.921 40 H 0.153 0.847 41 H 0.095 0.905 42 H 0.136 0.864 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.112 0.888 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.661 7.288 27.265 29.831 hybrid contribution -0.203 0.431 1.030 1.135 sum -9.864 7.720 28.295 30.944 Atomic orbital electron populations 1.22327 0.96165 1.01639 1.01384 1.20486 0.94094 0.94581 0.84714 0.93916 1.42689 1.79884 1.09834 1.06777 1.20357 1.40107 0.95353 0.89938 0.91330 1.27181 0.99716 0.97642 1.05306 1.70995 1.53797 1.09729 1.27998 0.82631 0.76973 0.73416 0.71759 1.22197 1.20003 1.20690 1.20783 0.96998 0.93060 0.84656 0.93313 1.22012 1.02416 0.95443 1.00742 1.45953 1.26418 1.56741 1.07039 1.21365 0.84540 0.79787 0.85328 1.90707 1.24594 1.44149 1.85801 1.22155 0.98002 1.01665 0.86798 1.62086 1.02747 1.57837 1.03228 1.22767 0.99887 0.99995 0.86651 1.21861 0.77403 1.01830 0.99824 1.47503 1.11790 1.66037 1.08428 1.21865 0.95339 1.03217 0.86918 1.20425 0.87696 0.75685 0.85779 1.90684 1.17921 1.53596 1.86278 1.22261 0.91834 0.99165 0.95666 0.94193 0.93003 0.89758 0.80416 0.94680 0.93766 0.92941 0.90489 0.74564 0.88400 0.83154 0.92057 0.84697 0.90479 0.86443 0.92071 0.89243 0.90596 0.88758 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.65 9.01 71.98 0.65 -4.00 16 2 C 0.17 6.34 2.93 44.99 0.13 6.47 16 3 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 4 N -0.75 -37.04 5.03 -322.95 -1.62 -38.67 16 5 C -0.33 -18.14 9.93 84.03 0.83 -17.31 16 6 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 7 C -0.11 -6.27 5.50 84.86 0.47 -5.80 16 8 N -0.98 -61.95 13.70 21.65 0.30 -61.65 16 9 Si 1.13 52.22 29.92 68.60 2.05 54.28 16 10 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 13 C 0.15 5.04 2.62 44.99 0.12 5.16 16 14 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 15 C -0.15 -4.87 9.00 71.98 0.65 -4.22 16 16 N -0.71 -16.23 4.99 -442.54 -2.21 -18.43 16 17 C 0.50 12.16 7.55 87.66 0.66 12.83 16 18 O -0.57 -20.46 13.97 -3.01 -0.04 -20.51 16 19 C 0.04 0.55 5.44 85.56 0.47 1.01 16 20 N -0.53 -8.69 4.47 -905.45 -4.05 -12.74 16 21 C 0.03 0.23 5.60 86.24 0.48 0.72 16 22 C 0.11 0.93 6.64 86.47 0.57 1.51 16 23 N -0.61 -10.69 3.23 -850.17 -2.74 -13.43 16 24 C 0.07 0.99 10.55 127.77 1.35 2.34 16 25 C 0.52 13.60 7.57 87.68 0.66 14.27 16 26 O -0.60 -21.56 16.07 -3.03 -0.05 -21.61 16 27 C 0.04 0.97 5.14 85.42 0.44 1.41 16 28 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.05 1.57 6.56 -2.39 -0.02 1.56 16 30 H 0.08 1.65 6.29 -2.39 -0.02 1.64 16 31 H 0.36 18.94 4.60 -92.71 -0.43 18.51 16 32 H 0.24 15.39 6.77 -92.71 -0.63 14.76 16 33 H 0.04 1.68 6.29 -2.39 -0.02 1.67 16 34 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.08 2.20 6.56 -2.39 -0.02 2.18 16 36 H 0.42 6.37 6.58 -92.71 -0.61 5.76 16 37 H 0.10 0.73 8.05 -2.39 -0.02 0.71 16 38 H 0.15 0.73 7.93 -2.39 -0.02 0.72 16 39 H 0.06 0.32 8.08 -2.39 -0.02 0.30 16 40 H 0.14 0.05 7.91 -2.38 -0.02 0.03 16 41 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.12 0.18 8.13 -2.38 -0.02 0.16 16 43 H 0.06 1.27 6.67 -2.38 -0.02 1.26 16 44 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.09 3.05 6.00 -2.39 -0.01 3.03 16 47 H 0.08 1.59 8.05 -2.39 -0.02 1.57 16 Total: -1.00 -87.03 368.87 -0.79 -87.81 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.09 Total: 30.57 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 7.48 Total: 14.38 kcal Atomic # 7 Polarization: -134.60 SS G_CDS: -10.33 Total: -144.92 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.09 Total: -42.11 kcal Atomic # 14 Polarization: 52.22 SS G_CDS: 2.05 Total: 54.28 kcal Total: -87.03 -0.79 -87.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485164884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.470 kcal (2) G-P(sol) polarization free energy of solvation -87.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds