Wall clock time and date at job start Fri Apr 10 2020 18:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36930 * 120.00406 * 2 1 4 4 H 1.07998 * 120.00229 * 146.82229 * 3 2 1 5 5 C 1.38818 * 119.99719 * 326.82649 * 3 2 1 6 6 N 1.31615 * 120.00252 * 334.38401 * 5 3 2 7 7 Si 1.86800 * 119.99995 * 154.38129 * 5 3 2 8 8 H 1.48509 * 109.46954 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.47334 * 119.99769 * 7 5 3 10 10 H 1.48498 * 109.47328 * 240.00374 * 7 5 3 11 11 C 1.46505 * 119.99715 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47091 * 273.61440 * 11 2 1 13 13 H 1.09004 * 109.58422 * 59.27230 * 12 11 2 14 14 C 1.53190 * 109.58793 * 298.84236 * 12 11 2 15 15 C 1.53043 * 109.31090 * 185.57521 * 14 12 11 16 16 C 1.53045 * 109.53773 * 61.36738 * 15 14 12 17 17 C 1.53192 * 109.31168 * 298.63272 * 16 15 14 18 18 N 1.46921 * 109.58699 * 179.55099 * 12 11 2 19 19 C 1.34780 * 120.63134 * 353.37327 * 18 12 11 20 20 O 1.21277 * 120.00010 * 4.75757 * 19 18 12 21 21 C 1.50698 * 120.00066 * 184.74930 * 19 18 12 22 22 C 1.53001 * 109.47285 * 180.02562 * 21 19 18 23 23 N 1.46496 * 109.47716 * 180.02562 * 22 21 19 24 24 C 1.34770 * 120.00519 * 180.02562 * 23 22 21 25 25 N 1.34771 * 120.00200 * 180.02562 * 24 23 22 26 26 O 1.21590 * 119.99617 * 359.97438 * 24 23 22 27 27 H 1.08998 * 109.46568 * 359.85231 * 1 2 3 28 28 H 1.09000 * 109.46700 * 119.84894 * 1 2 3 29 29 H 1.08994 * 109.46987 * 239.84912 * 1 2 3 30 30 H 0.97005 * 119.99740 * 356.56176 * 6 5 3 31 31 H 1.08997 * 109.47345 * 33.61903 * 11 2 1 32 32 H 1.09002 * 109.47295 * 153.61820 * 11 2 1 33 33 H 1.08997 * 109.49743 * 305.52440 * 14 12 11 34 34 H 1.09001 * 109.49892 * 65.62740 * 14 12 11 35 35 H 1.08994 * 109.46157 * 301.34682 * 15 14 12 36 36 H 1.09006 * 109.44822 * 181.37485 * 15 14 12 37 37 H 1.08996 * 109.49506 * 178.67863 * 16 15 14 38 38 H 1.09002 * 109.52330 * 58.59649 * 16 15 14 39 39 H 1.09003 * 109.58574 * 294.85070 * 17 16 15 40 40 H 1.08999 * 109.70775 * 174.49216 * 17 16 15 41 41 H 1.08994 * 109.47562 * 300.00768 * 21 19 18 42 42 H 1.09008 * 109.46845 * 60.00513 * 21 19 18 43 43 H 1.09004 * 109.47215 * 300.00648 * 22 21 19 44 44 H 1.09003 * 109.47143 * 59.99934 * 22 21 19 45 45 H 0.97006 * 119.99682 * 0.02562 * 23 22 21 46 46 H 0.97006 * 120.00001 * 359.97438 * 25 24 23 47 47 H 0.97003 * 120.00418 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.0977 1.2620 0.5118 5 6 1.6254 2.2900 -0.6578 6 7 0.7927 2.1230 -1.6633 7 14 2.1015 4.0131 -0.1159 8 1 3.0449 3.9293 1.0280 9 1 2.7544 4.7243 -1.2442 10 1 0.8843 4.7556 0.2992 11 6 2.1975 -1.2688 0.0006 12 6 2.3737 -1.7553 1.4404 13 1 1.3959 -1.8890 1.9032 14 6 3.1847 -0.7265 2.2345 15 6 3.4763 -1.2806 3.6310 16 6 4.3060 -2.5610 3.5106 17 6 3.5077 -3.6106 2.7310 18 7 3.0987 -3.0332 1.4433 19 6 3.3828 -3.6641 0.2867 20 8 3.1167 -3.1372 -0.7728 21 6 4.0313 -5.0242 0.3099 22 6 4.2441 -5.5124 -1.1245 23 7 4.8740 -6.8348 -1.1020 24 6 5.1589 -7.4653 -2.2586 25 7 5.7379 -8.6822 -2.2378 26 8 4.8928 -6.9367 -3.3207 27 1 -0.3632 1.0277 0.0026 28 1 -0.3633 -0.5115 -0.8914 29 1 -0.3633 -0.5161 0.8886 30 1 0.5842 1.2290 -1.9769 31 1 1.6381 -2.0116 -0.5681 32 1 3.1765 -1.1234 -0.4561 33 1 4.1241 -0.5272 1.7188 34 1 2.6138 0.1979 2.3218 35 1 2.5368 -1.5029 4.1369 36 1 4.0323 -0.5404 4.2064 37 1 4.5331 -2.9422 4.5062 38 1 5.2350 -2.3448 2.9831 39 1 2.6233 -3.8949 3.3013 40 1 4.1282 -4.4896 2.5567 41 1 4.9935 -4.9594 0.8178 42 1 3.3868 -5.7250 0.8407 43 1 3.2820 -5.5771 -1.6328 44 1 4.8887 -4.8115 -1.6550 45 1 5.0860 -7.2567 -0.2546 46 1 5.9499 -9.1041 -1.3904 47 1 5.9433 -9.1359 -3.0702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489332489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:21 Heat of formation + Delta-G solvation = -38.334490 kcal Electronic energy + Delta-G solvation = -27209.767262 eV Core-core repulsion = 23428.510685 eV Total energy + Delta-G solvation = -3781.256578 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.45962 -39.85811 -37.36349 -35.71270 -35.21292 -33.88785 -32.78758 -32.20367 -30.50699 -29.86052 -26.57774 -25.69633 -24.61584 -23.91740 -22.19325 -21.38996 -20.64651 -20.39805 -18.98668 -18.23793 -17.53368 -17.20444 -16.44452 -16.15501 -15.69392 -15.22070 -14.80361 -14.42684 -14.36839 -14.19028 -14.10421 -13.82028 -13.47127 -13.31642 -13.12515 -12.93529 -12.68323 -12.55952 -11.93661 -11.71211 -11.59757 -11.23982 -11.05084 -10.85581 -10.66708 -10.51638 -10.49008 -10.41605 -10.27072 -10.06874 -10.01135 -9.96136 -9.33558 -9.22619 -8.83919 -8.27849 -8.17228 -6.66980 -5.95507 -3.15201 2.56913 2.79295 3.02771 3.21593 3.55181 3.58818 3.71420 4.19557 4.55067 4.61049 4.70292 4.76473 4.84946 4.94322 5.07374 5.17320 5.35273 5.45904 5.47504 5.49787 5.69072 5.76019 5.84923 5.86556 5.87373 5.96112 6.09011 6.12748 6.21822 6.41501 6.43943 6.45020 6.64061 6.71332 6.72421 6.87233 6.96458 7.02042 7.24737 7.39943 7.63035 7.70807 8.18444 8.40033 8.43409 8.73597 9.30323 9.99415 10.45299 11.32121 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.003427 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.059000 B = 8168.171869 C = 9411.375194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.603 5.603 3 C -0.353 4.353 4 H 0.056 0.944 5 C -0.024 4.024 6 N -0.914 5.914 7 Si 1.068 2.932 8 H -0.292 1.292 9 H -0.295 1.295 10 H -0.291 1.291 11 C 0.163 3.837 12 C 0.126 3.874 13 H 0.059 0.941 14 C -0.119 4.119 15 C -0.122 4.122 16 C -0.133 4.133 17 C 0.108 3.892 18 N -0.606 5.606 19 C 0.510 3.490 20 O -0.515 6.515 21 C -0.152 4.152 22 C 0.151 3.849 23 N -0.746 5.746 24 C 0.703 3.297 25 N -0.870 5.870 26 O -0.588 6.588 27 H 0.067 0.933 28 H 0.005 0.995 29 H -0.003 1.003 30 H 0.271 0.729 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.394 0.606 46 H 0.395 0.605 47 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.418 -21.366 12.442 26.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.327 5.327 3 C -0.482 4.482 4 H 0.073 0.927 5 C -0.227 4.227 6 N -0.553 5.553 7 Si 0.898 3.102 8 H -0.219 1.219 9 H -0.222 1.222 10 H -0.218 1.218 11 C 0.036 3.964 12 C 0.022 3.978 13 H 0.077 0.923 14 C -0.157 4.157 15 C -0.159 4.159 16 C -0.172 4.172 17 C -0.015 4.015 18 N -0.341 5.341 19 C 0.297 3.703 20 O -0.390 6.390 21 C -0.193 4.193 22 C 0.027 3.973 23 N -0.403 5.403 24 C 0.401 3.599 25 N -0.438 5.438 26 O -0.465 6.465 27 H 0.086 0.914 28 H 0.024 0.976 29 H 0.015 0.985 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.227 0.773 46 H 0.222 0.778 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 8.697 -18.817 10.731 23.343 hybrid contribution 0.650 -2.344 1.105 2.671 sum 9.347 -21.161 11.836 25.986 Atomic orbital electron populations 1.20997 0.84903 1.00746 0.95196 1.44140 1.00671 1.01900 1.86011 1.19950 1.07189 0.89138 1.31929 0.92677 1.25884 0.99615 1.03294 0.93862 1.70686 1.37787 1.25970 1.20827 0.83497 0.75632 0.75724 0.75326 1.21857 1.22190 1.21812 1.21377 0.97688 0.87523 0.89766 1.22323 0.92850 0.80472 1.02158 0.92251 1.21919 1.00816 0.99567 0.93415 1.21586 0.99471 0.96424 0.98468 1.21906 0.99154 0.96383 0.99721 1.21694 0.98828 0.96071 0.84950 1.48319 1.57114 1.23401 1.05241 1.20212 0.79435 0.86567 0.84095 1.90881 1.51694 1.66012 1.30385 1.21864 1.02595 0.96257 0.98571 1.20936 0.99321 0.81854 0.95237 1.45085 1.67091 1.21034 1.07079 1.15956 0.78494 0.81123 0.84358 1.42992 1.68695 1.19756 1.12405 1.91026 1.59116 1.66896 1.29421 0.91413 0.97626 0.98495 0.91824 0.92728 0.92078 0.92249 0.88867 0.92324 0.92137 0.91334 0.91646 0.91669 0.90348 0.88650 0.88663 0.90424 0.90372 0.77286 0.77758 0.75396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.18 9.09 59.85 0.54 3.72 16 2 N -0.60 -15.72 2.43 -181.12 -0.44 -16.16 16 3 C -0.35 -9.95 8.18 -15.06 -0.12 -10.08 16 4 H 0.06 1.55 6.92 -52.49 -0.36 1.19 16 5 C -0.02 -0.69 4.60 -17.43 -0.08 -0.77 16 6 N -0.91 -28.45 12.55 55.49 0.70 -27.75 16 7 Si 1.07 25.92 29.99 -169.99 -5.10 20.83 16 8 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 C 0.16 3.76 3.64 -4.04 -0.01 3.75 16 12 C 0.13 2.29 3.19 -67.60 -0.22 2.07 16 13 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 14 C -0.12 -2.07 4.22 -26.61 -0.11 -2.18 16 15 C -0.12 -1.55 5.88 -26.69 -0.16 -1.71 16 16 C -0.13 -1.33 6.08 -26.61 -0.16 -1.49 16 17 C 0.11 1.04 6.33 -3.71 -0.02 1.01 16 18 N -0.61 -8.59 2.97 -165.22 -0.49 -9.09 16 19 C 0.51 7.57 7.61 -10.98 -0.08 7.48 16 20 O -0.51 -10.22 11.39 5.56 0.06 -10.15 16 21 C -0.15 -1.41 4.21 -27.88 -0.12 -1.53 16 22 C 0.15 1.77 4.96 -4.04 -0.02 1.75 16 23 N -0.75 -6.47 5.56 -65.23 -0.36 -6.84 16 24 C 0.70 7.87 8.84 -86.93 -0.77 7.10 16 25 N -0.87 -5.25 8.88 27.63 0.25 -5.00 16 26 O -0.59 -10.02 17.18 5.29 0.09 -9.93 16 27 H 0.07 1.83 6.31 -51.93 -0.33 1.50 16 28 H 0.01 0.14 8.07 -51.93 -0.42 -0.28 16 29 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 30 H 0.27 8.63 7.02 -40.82 -0.29 8.34 16 31 H 0.05 1.33 6.34 -51.93 -0.33 1.00 16 32 H 0.06 1.57 6.96 -51.93 -0.36 1.21 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.90 6.72 -51.93 -0.35 1.55 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.51 5.96 -51.93 -0.31 0.20 16 41 H 0.10 0.66 7.49 -51.93 -0.39 0.27 16 42 H 0.10 0.65 8.10 -51.92 -0.42 0.22 16 43 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 44 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 45 H 0.39 1.81 8.49 -40.82 -0.35 1.47 16 46 H 0.39 0.94 8.84 -40.82 -0.36 0.58 16 47 H 0.41 2.22 8.93 -40.82 -0.36 1.85 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -37.82 366.60 -8.75 -46.57 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.65 Total: 2.87 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -1.33 Total: 9.13 kcal Atomic # 7 Polarization: -64.49 SS G_CDS: -0.35 Total: -64.84 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.15 Total: -20.08 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.10 Total: 20.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.82 -8.75 -46.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489332489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.240 kcal (2) G-P(sol) polarization free energy of solvation -37.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds