Wall clock time and date at job start Fri Apr 10 2020 18:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36930 * 120.00406 * 2 1 4 4 H 1.07998 * 120.00229 * 146.82229 * 3 2 1 5 5 C 1.38818 * 119.99719 * 326.82649 * 3 2 1 6 6 N 1.31615 * 120.00252 * 334.38401 * 5 3 2 7 7 Si 1.86800 * 119.99995 * 154.38129 * 5 3 2 8 8 H 1.48509 * 109.46954 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.47334 * 119.99769 * 7 5 3 10 10 H 1.48498 * 109.47328 * 240.00374 * 7 5 3 11 11 C 1.46505 * 119.99715 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47091 * 273.61440 * 11 2 1 13 13 H 1.09004 * 109.58422 * 59.27230 * 12 11 2 14 14 C 1.53190 * 109.58793 * 298.84236 * 12 11 2 15 15 C 1.53043 * 109.31090 * 185.57521 * 14 12 11 16 16 C 1.53045 * 109.53773 * 61.36738 * 15 14 12 17 17 C 1.53192 * 109.31168 * 298.63272 * 16 15 14 18 18 N 1.46921 * 109.58699 * 179.55099 * 12 11 2 19 19 C 1.34780 * 120.63134 * 353.37327 * 18 12 11 20 20 O 1.21277 * 120.00010 * 4.75757 * 19 18 12 21 21 C 1.50698 * 120.00066 * 184.74930 * 19 18 12 22 22 C 1.53001 * 109.47285 * 180.02562 * 21 19 18 23 23 N 1.46496 * 109.47716 * 180.02562 * 22 21 19 24 24 C 1.34770 * 120.00519 * 180.02562 * 23 22 21 25 25 N 1.34771 * 120.00200 * 180.02562 * 24 23 22 26 26 O 1.21590 * 119.99617 * 359.97438 * 24 23 22 27 27 H 1.08998 * 109.46568 * 359.85231 * 1 2 3 28 28 H 1.09000 * 109.46700 * 119.84894 * 1 2 3 29 29 H 1.08994 * 109.46987 * 239.84912 * 1 2 3 30 30 H 0.97005 * 119.99740 * 356.56176 * 6 5 3 31 31 H 1.08997 * 109.47345 * 33.61903 * 11 2 1 32 32 H 1.09002 * 109.47295 * 153.61820 * 11 2 1 33 33 H 1.08997 * 109.49743 * 305.52440 * 14 12 11 34 34 H 1.09001 * 109.49892 * 65.62740 * 14 12 11 35 35 H 1.08994 * 109.46157 * 301.34682 * 15 14 12 36 36 H 1.09006 * 109.44822 * 181.37485 * 15 14 12 37 37 H 1.08996 * 109.49506 * 178.67863 * 16 15 14 38 38 H 1.09002 * 109.52330 * 58.59649 * 16 15 14 39 39 H 1.09003 * 109.58574 * 294.85070 * 17 16 15 40 40 H 1.08999 * 109.70775 * 174.49216 * 17 16 15 41 41 H 1.08994 * 109.47562 * 300.00768 * 21 19 18 42 42 H 1.09008 * 109.46845 * 60.00513 * 21 19 18 43 43 H 1.09004 * 109.47215 * 300.00648 * 22 21 19 44 44 H 1.09003 * 109.47143 * 59.99934 * 22 21 19 45 45 H 0.97006 * 119.99682 * 0.02562 * 23 22 21 46 46 H 0.97006 * 120.00001 * 359.97438 * 25 24 23 47 47 H 0.97003 * 120.00418 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.0977 1.2620 0.5118 5 6 1.6254 2.2900 -0.6578 6 7 0.7927 2.1230 -1.6633 7 14 2.1015 4.0131 -0.1159 8 1 3.0449 3.9293 1.0280 9 1 2.7544 4.7243 -1.2442 10 1 0.8843 4.7556 0.2992 11 6 2.1975 -1.2688 0.0006 12 6 2.3737 -1.7553 1.4404 13 1 1.3959 -1.8890 1.9032 14 6 3.1847 -0.7265 2.2345 15 6 3.4763 -1.2806 3.6310 16 6 4.3060 -2.5610 3.5106 17 6 3.5077 -3.6106 2.7310 18 7 3.0987 -3.0332 1.4433 19 6 3.3828 -3.6641 0.2867 20 8 3.1167 -3.1372 -0.7728 21 6 4.0313 -5.0242 0.3099 22 6 4.2441 -5.5124 -1.1245 23 7 4.8740 -6.8348 -1.1020 24 6 5.1589 -7.4653 -2.2586 25 7 5.7379 -8.6822 -2.2378 26 8 4.8928 -6.9367 -3.3207 27 1 -0.3632 1.0277 0.0026 28 1 -0.3633 -0.5115 -0.8914 29 1 -0.3633 -0.5161 0.8886 30 1 0.5842 1.2290 -1.9769 31 1 1.6381 -2.0116 -0.5681 32 1 3.1765 -1.1234 -0.4561 33 1 4.1241 -0.5272 1.7188 34 1 2.6138 0.1979 2.3218 35 1 2.5368 -1.5029 4.1369 36 1 4.0323 -0.5404 4.2064 37 1 4.5331 -2.9422 4.5062 38 1 5.2350 -2.3448 2.9831 39 1 2.6233 -3.8949 3.3013 40 1 4.1282 -4.4896 2.5567 41 1 4.9935 -4.9594 0.8178 42 1 3.3868 -5.7250 0.8407 43 1 3.2820 -5.5771 -1.6328 44 1 4.8887 -4.8115 -1.6550 45 1 5.0860 -7.2567 -0.2546 46 1 5.9499 -9.1041 -1.3904 47 1 5.9433 -9.1359 -3.0702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489332489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:20 Heat of formation + Delta-G solvation = -69.790881 kcal Electronic energy + Delta-G solvation = -27211.131314 eV Core-core repulsion = 23428.510685 eV Total energy + Delta-G solvation = -3782.620629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64815 -40.79415 -38.64247 -37.52459 -36.26425 -34.71176 -34.03814 -33.76289 -31.97461 -31.05876 -28.22666 -27.66790 -25.95591 -24.91286 -23.76302 -22.33089 -22.07508 -21.74490 -20.06714 -19.25069 -19.11085 -18.30061 -17.60399 -17.20439 -16.97024 -16.35059 -16.06484 -15.91311 -15.57306 -15.44736 -15.28276 -15.21155 -14.88988 -14.79592 -14.56199 -14.35290 -13.97950 -13.83695 -13.22724 -13.05948 -12.87353 -12.74530 -12.59971 -12.46780 -12.29882 -12.01806 -11.87332 -11.86044 -11.59241 -11.57361 -11.47910 -11.33000 -10.77171 -10.43925 -10.27049 -10.03957 -9.48670 -8.85854 -8.24088 -5.43953 1.55613 1.64819 1.66654 1.69833 1.80620 2.14398 2.19906 2.66893 3.23323 3.49254 3.61133 3.74490 3.81357 3.93499 3.96775 4.05515 4.10391 4.18519 4.35578 4.40047 4.52285 4.61933 4.65482 4.71113 4.81280 4.83986 4.86724 4.92814 5.02725 5.05700 5.09777 5.14040 5.19691 5.34639 5.36707 5.38883 5.51737 5.72958 5.90236 5.91634 6.02304 6.38934 6.52427 7.07747 7.13201 7.28939 7.65281 7.80426 8.24669 8.98452 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.003427 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.059000 B = 8168.171869 C = 9411.375194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.139 3.861 2 N -0.621 5.621 3 C -0.347 4.347 4 H 0.051 0.949 5 C -0.081 4.081 6 N -0.942 5.942 7 Si 1.120 2.880 8 H -0.269 1.269 9 H -0.294 1.294 10 H -0.284 1.284 11 C 0.176 3.824 12 C 0.140 3.860 13 H 0.061 0.939 14 C -0.111 4.111 15 C -0.116 4.116 16 C -0.129 4.129 17 C 0.100 3.900 18 N -0.605 5.605 19 C 0.498 3.502 20 O -0.580 6.580 21 C -0.129 4.129 22 C 0.158 3.842 23 N -0.724 5.724 24 C 0.694 3.306 25 N -0.843 5.843 26 O -0.655 6.655 27 H 0.044 0.956 28 H -0.006 1.006 29 H 0.027 0.973 30 H 0.250 0.750 31 H 0.035 0.965 32 H 0.023 0.977 33 H 0.033 0.967 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.043 0.957 44 H 0.041 0.959 45 H 0.420 0.580 46 H 0.417 0.583 47 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.152 -24.095 16.723 31.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.347 5.347 3 C -0.477 4.477 4 H 0.069 0.931 5 C -0.277 4.277 6 N -0.584 5.584 7 Si 0.945 3.055 8 H -0.194 1.194 9 H -0.222 1.222 10 H -0.210 1.210 11 C 0.051 3.949 12 C 0.034 3.966 13 H 0.079 0.921 14 C -0.150 4.150 15 C -0.154 4.154 16 C -0.166 4.166 17 C -0.020 4.020 18 N -0.338 5.338 19 C 0.287 3.713 20 O -0.460 6.460 21 C -0.168 4.168 22 C 0.032 3.968 23 N -0.382 5.382 24 C 0.392 3.608 25 N -0.412 5.412 26 O -0.537 6.537 27 H 0.063 0.937 28 H 0.013 0.987 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.142 0.858 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.258 0.742 46 H 0.249 0.751 47 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 10.489 -21.673 15.146 28.446 hybrid contribution 0.157 -1.626 -0.237 1.650 sum 10.646 -23.299 14.909 29.639 Atomic orbital electron populations 1.20843 0.84379 0.99454 0.95957 1.44402 1.01252 1.02497 1.86507 1.20162 1.07051 0.90013 1.30476 0.93097 1.27393 0.99535 1.07345 0.93385 1.70845 1.40197 1.24455 1.22882 0.82808 0.76031 0.71142 0.75553 1.19415 1.22161 1.20988 1.21193 0.94834 0.85819 0.93043 1.21696 0.93909 0.83011 0.97937 0.92136 1.21740 0.98587 0.98152 0.96480 1.21550 1.00854 0.98232 0.94746 1.21916 0.98049 0.94743 1.01931 1.22164 1.00459 0.97121 0.82304 1.48384 1.56293 1.21753 1.07404 1.21258 0.78594 0.88286 0.83146 1.90869 1.54402 1.67917 1.32801 1.21768 1.04826 0.92915 0.97319 1.20589 0.97005 0.82641 0.96549 1.44684 1.66109 1.19737 1.07718 1.16288 0.78507 0.82147 0.83875 1.42715 1.66702 1.17801 1.14024 1.90991 1.61875 1.68826 1.32020 0.93707 0.98732 0.95478 0.94020 0.94664 0.95839 0.94777 0.92542 0.91252 0.91416 0.87302 0.92371 0.89702 0.85828 0.84540 0.84306 0.93842 0.94049 0.74207 0.75125 0.74728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.27 9.09 127.77 1.16 8.43 16 2 N -0.62 -34.12 2.43 -726.93 -1.77 -35.89 16 3 C -0.35 -20.46 8.18 84.04 0.69 -19.78 16 4 H 0.05 3.00 6.92 -2.91 -0.02 2.98 16 5 C -0.08 -4.84 4.60 84.86 0.39 -4.45 16 6 N -0.94 -61.33 12.55 21.65 0.27 -61.06 16 7 Si 1.12 53.40 29.99 68.60 2.06 55.46 16 8 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 9 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 C 0.18 8.65 3.64 86.38 0.31 8.96 16 12 C 0.14 5.09 3.19 44.97 0.14 5.24 16 13 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 14 C -0.11 -3.87 4.22 30.67 0.13 -3.74 16 15 C -0.12 -2.63 5.88 30.62 0.18 -2.45 16 16 C -0.13 -1.91 6.08 30.67 0.19 -1.73 16 17 C 0.10 1.38 6.33 86.36 0.55 1.93 16 18 N -0.60 -15.98 2.97 -795.03 -2.36 -18.35 16 19 C 0.50 14.41 7.61 87.66 0.67 15.08 16 20 O -0.58 -24.60 11.39 -3.02 -0.03 -24.63 16 21 C -0.13 -1.94 4.21 29.85 0.13 -1.81 16 22 C 0.16 3.65 4.96 86.38 0.43 4.08 16 23 N -0.72 -10.94 5.56 -478.55 -2.66 -13.60 16 24 C 0.69 14.88 8.84 179.06 1.58 16.46 16 25 N -0.84 -8.19 8.88 -184.75 -1.64 -9.83 16 26 O -0.65 -23.19 17.18 -4.00 -0.07 -23.25 16 27 H 0.04 2.52 6.31 -2.39 -0.02 2.50 16 28 H -0.01 -0.30 8.07 -2.39 -0.02 -0.32 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.25 16.93 7.02 -92.70 -0.65 16.28 16 31 H 0.04 1.85 6.34 -2.39 -0.02 1.84 16 32 H 0.02 1.30 6.96 -2.39 -0.02 1.28 16 33 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 2.36 6.72 -2.39 -0.02 2.34 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.12 0.66 5.96 -2.39 -0.01 0.64 16 41 H 0.14 1.05 7.49 -2.39 -0.02 1.03 16 42 H 0.14 1.02 8.10 -2.38 -0.02 1.00 16 43 H 0.04 1.30 8.10 -2.38 -0.02 1.28 16 44 H 0.04 1.26 8.10 -2.39 -0.02 1.24 16 45 H 0.42 1.91 8.49 -92.70 -0.79 1.12 16 46 H 0.42 0.42 8.84 -92.70 -0.82 -0.40 16 47 H 0.42 3.71 8.93 -92.71 -0.83 2.89 16 Total: -1.00 -94.55 366.60 -0.97 -95.52 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -1.31 Total: 9.41 kcal Atomic # 6 Polarization: 19.67 SS G_CDS: 6.54 Total: 26.22 kcal Atomic # 7 Polarization: -130.57 SS G_CDS: -8.16 Total: -138.73 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -0.10 Total: -47.89 kcal Atomic # 14 Polarization: 53.40 SS G_CDS: 2.06 Total: 55.46 kcal Total: -94.55 -0.97 -95.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489332489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.733 kcal (2) G-P(sol) polarization free energy of solvation -94.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds