Wall clock time and date at job start Fri Apr 10 2020 18:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47052 * 2 1 4 4 C 1.36935 * 119.99815 * 275.30841 * 3 2 1 5 5 H 1.08001 * 120.00068 * 37.58135 * 4 3 2 6 6 C 1.38811 * 120.00234 * 217.57392 * 4 3 2 7 7 N 1.31622 * 119.99764 * 21.43669 * 6 4 3 8 8 Si 1.86795 * 120.00462 * 201.43383 * 6 4 3 9 9 H 1.48505 * 109.46987 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46936 * 119.99691 * 8 6 4 11 11 H 1.48489 * 109.47350 * 240.00227 * 8 6 4 12 12 C 1.46499 * 119.99871 * 95.31308 * 3 2 1 13 13 C 1.53008 * 109.46675 * 269.99909 * 12 3 2 14 14 N 1.46501 * 109.46766 * 180.02562 * 13 12 3 15 15 C 1.34777 * 119.99520 * 180.02562 * 14 13 12 16 16 O 1.21276 * 120.00532 * 359.97438 * 15 14 13 17 17 C 1.50705 * 119.99806 * 179.97438 * 15 14 13 18 18 N 1.46495 * 109.47293 * 179.97438 * 17 15 14 19 19 C 1.34779 * 120.00201 * 180.02562 * 18 17 15 20 20 O 1.21586 * 119.99821 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99894 * 180.02562 * 19 18 17 22 22 C 1.47022 * 125.65265 * 359.68355 * 21 19 18 23 23 C 1.54314 * 107.27422 * 181.32916 * 22 21 19 24 24 C 1.55158 * 102.94353 * 22.19445 * 23 22 21 25 25 C 1.47422 * 125.64466 * 179.97438 * 21 19 18 26 26 H 1.08996 * 109.47068 * 60.00499 * 1 2 3 27 27 H 1.09007 * 109.46758 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47280 * 299.99817 * 1 2 3 29 29 H 1.09005 * 109.47099 * 239.99752 * 2 1 3 30 30 H 1.09001 * 109.47552 * 120.00263 * 2 1 3 31 31 H 0.97000 * 120.00148 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.46892 * 150.00276 * 12 3 2 33 33 H 1.08997 * 109.47612 * 29.99713 * 12 3 2 34 34 H 1.08999 * 109.47137 * 59.99836 * 13 12 3 35 35 H 1.09005 * 109.46940 * 299.99908 * 13 12 3 36 36 H 0.97003 * 120.00171 * 359.97438 * 14 13 12 37 37 H 1.09006 * 109.46652 * 60.00361 * 17 15 14 38 38 H 1.08997 * 109.47155 * 300.00752 * 17 15 14 39 39 H 0.97002 * 119.99719 * 359.97438 * 18 17 15 40 40 H 1.09004 * 109.87870 * 300.74802 * 22 21 19 41 41 H 1.09001 * 109.88070 * 61.90779 * 22 21 19 42 42 H 1.09005 * 110.72035 * 263.83008 * 23 22 21 43 43 H 1.08995 * 110.72361 * 140.55694 * 23 22 21 44 44 H 1.09005 * 111.00646 * 206.42611 * 24 23 22 45 45 H 1.08991 * 111.00599 * 82.57176 * 24 23 22 46 46 H 1.08998 * 110.36751 * 274.44108 * 25 21 19 47 47 H 1.09002 * 110.37268 * 36.65546 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9278 -1.9627 6 6 3.2111 2.9290 -1.3729 7 7 4.3026 2.7981 -0.6492 8 14 3.0992 4.2796 -2.6584 9 1 1.7770 4.2142 -3.3313 10 1 3.2548 5.6024 -2.0014 11 1 4.1764 4.0965 -3.6639 12 6 2.3732 2.0327 1.2633 13 6 1.1425 2.7382 1.8366 14 7 1.4976 3.3902 3.0996 15 6 0.5649 4.0768 3.7888 16 8 -0.5681 4.1555 3.3634 17 6 0.9299 4.7470 5.0884 18 7 -0.2484 5.4227 5.6372 19 6 -0.1585 6.0941 6.8024 20 8 0.9004 6.1387 7.3982 21 7 -1.2427 6.7153 7.3075 22 6 -2.5772 6.7463 6.6915 23 6 -3.4839 7.5977 7.6049 24 6 -2.4672 8.4674 8.3906 25 6 -1.2853 7.4812 8.5665 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 5.0491 3.4028 -0.7836 32 1 3.1616 2.7641 1.0859 33 1 2.7255 1.2834 1.9721 34 1 0.3541 2.0068 2.0138 35 1 0.7902 3.4876 1.1277 36 1 2.4037 3.3270 3.4401 37 1 1.7181 5.4788 4.9109 38 1 1.2827 3.9978 5.7970 39 1 -1.0931 5.3874 5.1617 40 1 -2.5181 7.1992 5.7017 41 1 -2.9738 5.7339 6.6150 42 1 -4.0533 6.9623 8.2834 43 1 -4.1498 8.2242 7.0115 44 1 -2.8734 8.7664 9.3569 45 1 -2.1663 9.3384 7.8087 46 1 -1.4688 6.8152 9.4096 47 1 -0.3525 8.0264 8.7107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492950040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:51 Heat of formation + Delta-G solvation = -45.490616 kcal Electronic energy + Delta-G solvation = -25908.573614 eV Core-core repulsion = 22127.006723 eV Total energy + Delta-G solvation = -3781.566891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.52063 -39.38268 -37.68725 -36.38737 -34.56765 -34.12631 -31.93448 -31.91105 -29.97180 -29.36762 -28.26829 -26.69873 -24.27733 -23.59842 -21.86948 -21.52351 -20.54880 -20.18958 -20.07482 -18.64740 -16.96160 -16.84064 -16.32017 -16.18443 -15.77515 -15.39370 -15.04127 -14.73194 -14.31208 -14.02954 -13.93356 -13.68222 -13.52956 -13.32695 -13.19227 -12.84860 -12.68871 -12.42744 -12.32006 -12.02397 -11.75041 -11.60830 -11.55632 -11.16386 -11.16189 -10.81463 -10.69455 -10.52728 -10.37772 -10.13041 -9.93358 -9.91549 -9.65261 -9.34109 -8.77908 -8.65707 -8.51740 -6.66622 -5.87327 -3.46161 2.31414 2.74044 3.04618 3.30804 3.39721 3.41465 3.44696 3.85432 4.18922 4.27164 4.43095 4.51182 4.83046 4.87960 4.99222 5.22728 5.24497 5.30420 5.32435 5.33719 5.45069 5.47649 5.50030 5.57577 5.74830 5.94037 5.96177 6.04390 6.11369 6.24665 6.34753 6.37280 6.46166 6.64585 6.73461 6.85226 6.88103 6.95565 7.12747 7.48853 7.74077 7.77363 7.80189 8.36999 8.42295 8.44877 9.10753 9.72578 10.30511 11.12820 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.018572 B = 0.002465 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.252345 B =11356.904920 C =11769.816282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.261 4.261 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.137 3.863 13 C 0.097 3.903 14 N -0.712 5.712 15 C 0.503 3.497 16 O -0.548 6.548 17 C 0.118 3.882 18 N -0.730 5.730 19 C 0.725 3.275 20 O -0.592 6.592 21 N -0.638 5.638 22 C 0.095 3.905 23 C -0.130 4.130 24 C -0.135 4.135 25 C 0.124 3.876 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.255 0.745 32 H 0.099 0.901 33 H 0.030 0.970 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.401 0.599 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.408 0.592 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.953 7.234 17.144 22.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 N -0.300 5.300 4 C -0.390 4.390 5 H 0.080 0.920 6 C -0.188 4.188 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.009 3.991 13 C -0.028 4.028 14 N -0.363 5.363 15 C 0.287 3.713 16 O -0.427 6.427 17 C -0.010 4.010 18 N -0.389 5.389 19 C 0.427 3.573 20 O -0.470 6.470 21 N -0.377 5.377 22 C -0.028 4.028 23 C -0.167 4.167 24 C -0.173 4.173 25 C 0.001 3.999 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.235 0.765 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.245 0.755 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.720 7.299 17.158 22.024 hybrid contribution -0.063 0.688 -0.789 1.049 sum -11.783 7.987 16.369 21.693 Atomic orbital electron populations 1.22387 0.99914 0.99098 1.01360 1.20888 0.91757 0.86968 0.98943 1.43620 1.76030 1.08291 1.02074 1.19053 1.04794 1.21225 0.93962 0.92026 1.25198 0.94167 1.01241 0.98147 1.69999 1.03162 1.37257 1.42467 0.86333 0.77780 0.82136 0.81192 1.19985 1.21377 1.21551 1.21068 0.94498 0.97040 0.86494 1.22533 1.01282 0.96559 0.82420 1.46053 1.13131 1.52579 1.24512 1.20431 0.85778 0.79312 0.85741 1.90665 1.20570 1.61560 1.69914 1.20939 0.88649 0.97845 0.93589 1.44748 1.14435 1.56270 1.23430 1.15286 0.82801 0.78481 0.80762 1.90930 1.27239 1.66982 1.61841 1.47521 1.09069 1.56111 1.25025 1.22049 0.82730 1.00689 0.97308 1.22605 0.97323 0.98255 0.98565 1.22819 0.95329 0.97862 1.01287 1.22078 0.99420 0.92922 0.85434 0.93104 0.94436 0.93713 0.93542 0.94705 0.93510 0.88323 0.95176 0.92824 0.91604 0.76481 0.88478 0.88543 0.75460 0.91349 0.91347 0.90400 0.89839 0.89633 0.90475 0.91630 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 10.21 37.16 0.38 -2.67 16 2 C 0.14 2.89 6.44 -4.04 -0.03 2.86 16 3 N -0.58 -13.79 2.43 -173.23 -0.42 -14.22 16 4 C -0.26 -6.89 9.45 -15.06 -0.14 -7.03 16 5 H 0.06 1.65 7.92 -52.49 -0.42 1.23 16 6 C 0.01 0.34 4.95 -17.43 -0.09 0.26 16 7 N -0.89 -24.44 11.47 55.49 0.64 -23.80 16 8 Si 0.90 21.17 29.60 -169.99 -5.03 16.14 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.14 2.95 5.45 -4.04 -0.02 2.93 16 13 C 0.10 1.89 6.00 -4.04 -0.02 1.86 16 14 N -0.71 -11.18 5.56 -60.29 -0.33 -11.51 16 15 C 0.50 7.81 7.90 -10.98 -0.09 7.72 16 16 O -0.55 -10.23 15.67 5.56 0.09 -10.15 16 17 C 0.12 1.51 6.15 -5.19 -0.03 1.48 16 18 N -0.73 -9.56 5.49 -66.41 -0.36 -9.92 16 19 C 0.73 10.10 8.49 -86.92 -0.74 9.36 16 20 O -0.59 -10.13 16.59 5.29 0.09 -10.04 16 21 N -0.64 -6.86 3.33 -176.23 -0.59 -7.45 16 22 C 0.10 0.75 6.15 -3.07 -0.02 0.73 16 23 C -0.13 -0.69 6.95 -24.90 -0.17 -0.86 16 24 C -0.13 -0.74 7.09 -24.57 -0.17 -0.92 16 25 C 0.12 1.06 6.91 -2.52 -0.02 1.04 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 28 H 0.04 0.81 6.64 -51.93 -0.34 0.47 16 29 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 30 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 31 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.10 2.40 5.52 -51.93 -0.29 2.12 16 33 H 0.03 0.60 7.86 -51.93 -0.41 0.20 16 34 H 0.05 1.06 6.64 -51.93 -0.34 0.72 16 35 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 36 H 0.40 5.28 8.47 -40.82 -0.35 4.93 16 37 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.41 5.19 6.42 -40.82 -0.26 4.93 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.75 8.03 -51.93 -0.42 0.33 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -32.67 383.03 -9.18 -41.85 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.86 Total: 6.56 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: -1.16 Total: 16.77 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: -1.07 Total: -66.90 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.17 Total: -20.19 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.67 -9.18 -41.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492950040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.645 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds