Wall clock time and date at job start Fri Apr 10 2020 18:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46861 * 2 1 4 4 C 1.36936 * 119.99914 * 272.99137 * 3 2 1 5 5 H 1.07995 * 119.99682 * 174.22669 * 4 3 2 6 6 C 1.38813 * 120.00156 * 354.22949 * 4 3 2 7 7 N 1.31625 * 119.99752 * 33.98636 * 6 4 3 8 8 Si 1.86799 * 119.99927 * 213.98516 * 6 4 3 9 9 H 1.48501 * 109.47154 * 94.99904 * 8 6 4 10 10 H 1.48498 * 109.46879 * 214.99867 * 8 6 4 11 11 H 1.48495 * 109.47061 * 334.99759 * 8 6 4 12 12 C 1.46500 * 119.99667 * 92.99521 * 3 2 1 13 13 C 1.52997 * 109.47280 * 269.99528 * 12 3 2 14 14 N 1.46501 * 109.47146 * 180.02562 * 13 12 3 15 15 C 1.34776 * 119.99911 * 180.02562 * 14 13 12 16 16 O 1.21287 * 119.99867 * 359.97438 * 15 14 13 17 17 C 1.50695 * 119.99878 * 180.02562 * 15 14 13 18 18 H 1.08997 * 109.70518 * 5.51605 * 17 15 14 19 19 C 1.52762 * 109.50647 * 245.40100 * 17 15 14 20 20 C 1.53043 * 109.38240 * 185.70288 * 19 17 15 21 21 C 1.53040 * 109.53544 * 61.24197 * 20 19 17 22 22 C 1.53196 * 109.31453 * 298.63484 * 21 20 19 23 23 N 1.46923 * 109.58807 * 125.87442 * 17 15 14 24 24 C 1.34772 * 120.62996 * 353.41580 * 23 17 15 25 25 N 1.34780 * 119.99952 * 184.67365 * 24 23 17 26 26 O 1.21585 * 120.00365 * 4.68065 * 24 23 17 27 27 H 1.09000 * 109.46953 * 299.99630 * 1 2 3 28 28 H 1.08996 * 109.47594 * 60.00081 * 1 2 3 29 29 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46665 * 239.99918 * 2 1 3 31 31 H 1.09001 * 109.47179 * 120.00139 * 2 1 3 32 32 H 0.97000 * 119.99450 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.46591 * 149.99846 * 12 3 2 34 34 H 1.08999 * 109.47166 * 30.00455 * 12 3 2 35 35 H 1.09004 * 109.46562 * 60.00397 * 13 12 3 36 36 H 1.09003 * 109.47067 * 300.00492 * 13 12 3 37 37 H 0.97002 * 120.00082 * 0.02562 * 14 13 12 38 38 H 1.08999 * 109.56366 * 65.67039 * 19 17 15 39 39 H 1.09003 * 109.36219 * 305.61608 * 19 17 15 40 40 H 1.08997 * 109.46214 * 301.22045 * 20 19 17 41 41 H 1.09007 * 109.45976 * 181.25463 * 20 19 17 42 42 H 1.09000 * 109.49842 * 178.68229 * 21 20 19 43 43 H 1.09007 * 109.52734 * 58.60147 * 21 20 19 44 44 H 1.08999 * 109.58425 * 294.84785 * 22 21 20 45 45 H 1.08996 * 109.70085 * 174.49348 * 22 21 20 46 46 H 0.96997 * 119.99625 * 175.34539 * 25 24 23 47 47 H 0.97000 * 119.99756 * 355.07932 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1881 2.0474 -1.1843 5 1 2.4580 3.0931 -1.1817 6 6 2.0134 1.3786 -2.3881 7 7 1.1095 0.4270 -2.4870 8 14 3.0610 1.8293 -3.8675 9 1 4.2329 0.9200 -3.9397 10 1 2.2527 1.6944 -5.1059 11 1 3.5302 3.2317 -3.7330 12 6 2.3249 2.0497 1.2670 13 6 1.0736 2.7626 1.7835 14 7 1.3804 3.4316 3.0502 15 6 0.4224 4.1273 3.6942 16 8 -0.6936 4.1999 3.2247 17 6 0.7382 4.8159 4.9969 18 1 1.8030 4.7258 5.2115 19 6 -0.0640 4.1678 6.1239 20 6 0.1488 4.9572 7.4177 21 6 -0.3507 6.3916 7.2300 22 6 0.4535 7.0662 6.1141 23 7 0.3726 6.2359 4.9047 24 6 -0.0344 6.7656 3.7341 25 7 -0.2762 8.0882 3.6408 26 8 -0.1837 6.0503 2.7624 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 0.9876 -0.0406 -3.3281 33 1 3.1198 2.7789 1.1100 34 1 2.6499 1.3100 1.9987 35 1 0.2788 2.0334 1.9404 36 1 0.7487 3.5023 1.0517 37 1 2.2730 3.3738 3.4254 38 1 0.2704 3.1401 6.2657 39 1 -1.1225 4.1739 5.8639 40 1 1.2105 4.9717 7.6639 41 1 -0.4053 4.4829 8.2278 42 1 -0.2204 6.9467 8.1589 43 1 -1.4066 6.3773 6.9597 44 1 1.4946 7.1634 6.4217 45 1 0.0396 8.0533 5.9082 46 1 -0.5035 8.4803 2.7832 47 1 -0.2266 8.6473 4.4319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493041929.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:56 Heat of formation + Delta-G solvation = -10.009064 kcal Electronic energy + Delta-G solvation = -27447.175002 eV Core-core repulsion = 23667.146707 eV Total energy + Delta-G solvation = -3780.028295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.93667 -38.42964 -37.44468 -36.23576 -34.12597 -33.74523 -32.56419 -31.60738 -31.10762 -29.53740 -27.53955 -25.75003 -24.28293 -23.59913 -21.86273 -21.52137 -20.43911 -20.14319 -19.49916 -18.40528 -17.02888 -16.63929 -16.33753 -15.76086 -15.29949 -15.02610 -14.80632 -14.72914 -14.42937 -14.24195 -13.87572 -13.66009 -13.44420 -13.36627 -12.89854 -12.79710 -12.24415 -11.97494 -11.79443 -11.77299 -11.47840 -11.30383 -11.19219 -11.03664 -10.97465 -10.68920 -10.42930 -10.25580 -9.86854 -9.67238 -9.64411 -9.52162 -9.29865 -9.03123 -8.75810 -8.14280 -8.10212 -6.92828 -5.77425 -2.93473 2.45186 3.15324 3.47244 3.49092 3.56630 3.57417 3.65090 4.09389 4.41401 4.48458 4.56724 4.62097 4.78366 4.90813 5.04474 5.09894 5.20271 5.33092 5.39990 5.49642 5.53604 5.67819 5.70504 5.74798 5.99699 6.04034 6.10117 6.24132 6.38990 6.60941 6.63200 6.80479 6.90427 6.97451 7.04112 7.13937 7.22310 7.26827 7.80153 7.80912 7.87019 8.09534 8.21286 8.39180 8.65893 8.99263 9.30106 9.94450 10.39122 11.28921 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.021807 B = 0.003188 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.681428 B = 8780.691559 C = 9480.369723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.162 3.838 3 N -0.594 5.594 4 C -0.258 4.258 5 H 0.078 0.922 6 C 0.007 3.993 7 N -0.882 5.882 8 Si 0.880 3.120 9 H -0.289 1.289 10 H -0.295 1.295 11 H -0.281 1.281 12 C 0.147 3.853 13 C 0.101 3.899 14 N -0.728 5.728 15 C 0.516 3.484 16 O -0.497 6.497 17 C 0.148 3.852 18 H 0.083 0.917 19 C -0.125 4.125 20 C -0.116 4.116 21 C -0.138 4.138 22 C 0.115 3.885 23 N -0.621 5.621 24 C 0.691 3.309 25 N -0.871 5.871 26 O -0.536 6.536 27 H 0.014 0.986 28 H 0.088 0.912 29 H 0.019 0.981 30 H 0.086 0.914 31 H 0.006 0.994 32 H 0.252 0.748 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.388 0.612 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.413 0.587 47 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.777 12.831 23.567 26.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.037 3.963 3 N -0.316 5.316 4 C -0.386 4.386 5 H 0.096 0.904 6 C -0.191 4.191 7 N -0.526 5.526 8 Si 0.710 3.290 9 H -0.217 1.217 10 H -0.222 1.222 11 H -0.206 1.206 12 C 0.018 3.982 13 C -0.025 4.025 14 N -0.381 5.381 15 C 0.299 3.701 16 O -0.369 6.369 17 C 0.040 3.960 18 H 0.101 0.899 19 C -0.164 4.164 20 C -0.154 4.154 21 C -0.176 4.176 22 C -0.008 4.008 23 N -0.362 5.362 24 C 0.391 3.609 25 N -0.443 5.443 26 O -0.409 6.409 27 H 0.033 0.967 28 H 0.107 0.893 29 H 0.038 0.962 30 H 0.104 0.896 31 H 0.025 0.975 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.221 0.779 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.245 0.755 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.158 12.128 22.433 25.502 hybrid contribution 0.669 0.862 -0.485 1.194 sum 0.510 12.990 21.947 25.508 Atomic orbital electron populations 1.22355 0.99205 0.98113 1.01211 1.21014 0.92586 0.84433 0.98221 1.44286 1.75861 1.10854 1.00605 1.19237 1.41129 0.94917 0.83298 0.90449 1.24695 0.98667 0.98560 0.97143 1.70321 1.29319 1.27831 1.25145 0.86559 0.81751 0.77968 0.82767 1.21681 1.22232 1.20613 1.20895 0.93938 0.94970 0.88378 1.22485 1.00707 0.96202 0.83124 1.45976 1.12933 1.54116 1.25033 1.19688 0.86073 0.79410 0.84937 1.90716 1.22561 1.57988 1.65667 1.20922 0.99183 0.80501 0.95385 0.89918 1.21791 1.01821 0.99348 0.93457 1.21493 1.01625 0.95062 0.97201 1.21952 1.00644 0.96709 0.98307 1.21623 1.00556 0.93642 0.84972 1.46968 1.72100 1.08932 1.08250 1.16125 0.78378 0.82530 0.83893 1.43248 1.79116 1.07599 1.14347 1.91345 1.55943 1.56816 1.36757 0.96734 0.89342 0.96220 0.89583 0.97538 0.93783 0.93235 0.94042 0.92414 0.91702 0.77937 0.90145 0.90339 0.91487 0.91169 0.90580 0.91239 0.91191 0.90363 0.75527 0.78152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.72 37.16 0.36 -3.33 16 2 C 0.16 4.04 5.71 -4.04 -0.02 4.02 16 3 N -0.59 -15.14 2.53 -173.24 -0.44 -15.58 16 4 C -0.26 -7.24 9.64 -15.06 -0.15 -7.38 16 5 H 0.08 2.18 8.02 -52.49 -0.42 1.76 16 6 C 0.01 0.20 4.90 -17.43 -0.09 0.12 16 7 N -0.88 -25.39 8.64 55.49 0.48 -24.91 16 8 Si 0.88 22.01 29.67 -169.99 -5.04 16.97 16 9 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 10 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 C 0.15 3.05 5.82 -4.04 -0.02 3.03 16 13 C 0.10 2.12 6.00 -4.04 -0.02 2.10 16 14 N -0.73 -12.26 5.56 -60.29 -0.33 -12.59 16 15 C 0.52 9.04 4.93 -10.99 -0.05 8.99 16 16 O -0.50 -11.26 13.69 -20.23 -0.28 -11.54 16 17 C 0.15 1.78 3.29 -68.98 -0.23 1.55 16 18 H 0.08 0.78 7.94 -51.93 -0.41 0.37 16 19 C -0.13 -1.24 5.32 -26.83 -0.14 -1.38 16 20 C -0.12 -0.75 5.89 -26.69 -0.16 -0.91 16 21 C -0.14 -0.81 6.08 -26.61 -0.16 -0.97 16 22 C 0.12 0.75 6.39 -3.71 -0.02 0.73 16 23 N -0.62 -7.07 2.98 -172.49 -0.51 -7.58 16 24 C 0.69 10.16 8.38 -86.92 -0.73 9.44 16 25 N -0.87 -8.51 8.78 27.63 0.24 -8.27 16 26 O -0.54 -11.18 12.15 -20.49 -0.25 -11.43 16 27 H 0.01 0.33 6.47 -51.93 -0.34 0.00 16 28 H 0.09 2.49 6.38 -51.93 -0.33 2.16 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 2.36 5.82 -51.93 -0.30 2.05 16 31 H 0.01 0.14 7.86 -51.93 -0.41 -0.27 16 32 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 34 H 0.04 0.77 7.87 -51.93 -0.41 0.36 16 35 H 0.06 1.33 6.47 -51.93 -0.34 1.00 16 36 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 37 H 0.39 5.08 8.33 -40.82 -0.34 4.74 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.36 5.64 -51.93 -0.29 0.06 16 46 H 0.41 3.86 8.93 -40.82 -0.36 3.50 16 47 H 0.39 2.33 6.31 -40.82 -0.26 2.07 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -37.34 362.98 -9.66 -47.00 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.56 Total: 6.47 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: -1.43 Total: 15.99 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -0.57 Total: -68.93 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.53 Total: -22.97 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.04 Total: 16.97 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.34 -9.66 -47.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493041929.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.991 kcal (2) G-P(sol) polarization free energy of solvation -37.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds