Wall clock time and date at job start Fri Apr 10 2020 18:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 C 1.52994 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47008 * 305.00767 * 4 3 2 6 6 N 1.46504 * 109.47185 * 65.00261 * 4 3 2 7 7 C 1.34773 * 119.99785 * 275.00073 * 6 4 3 8 8 N 1.34777 * 119.99550 * 179.97438 * 7 6 4 9 9 O 1.21585 * 120.00548 * 0.02562 * 7 6 4 10 10 C 1.50698 * 109.47368 * 185.00391 * 4 3 2 11 11 O 1.21282 * 120.00158 * 240.00339 * 10 4 3 12 12 N 1.34775 * 119.99739 * 60.00174 * 10 4 3 13 13 C 1.46501 * 119.99725 * 180.02562 * 12 10 4 14 14 C 1.53004 * 109.47298 * 185.57208 * 13 12 10 15 15 H 1.08992 * 109.99734 * 296.33444 * 14 13 12 16 16 C 1.54325 * 109.88662 * 175.23104 * 14 13 12 17 17 C 1.55150 * 102.94655 * 218.39071 * 16 14 13 18 18 C 1.54914 * 101.57955 * 35.50519 * 17 16 14 19 19 N 1.47027 * 109.88001 * 57.42768 * 14 13 12 20 20 C 1.36940 * 125.64586 * 298.32397 * 19 14 13 21 21 H 1.07996 * 119.99842 * 330.52092 * 20 19 14 22 22 C 1.38807 * 119.99944 * 150.52509 * 20 19 14 23 23 N 1.31625 * 120.00289 * 163.61632 * 22 20 19 24 24 Si 1.86807 * 120.00006 * 343.61715 * 22 20 19 25 25 H 1.48497 * 109.47232 * 84.84969 * 24 22 20 26 26 H 1.48501 * 109.46930 * 204.84895 * 24 22 20 27 27 H 1.48493 * 109.46846 * 324.84569 * 24 22 20 28 28 H 1.09004 * 109.46473 * 299.99355 * 1 2 3 29 29 H 1.08995 * 109.47541 * 59.99399 * 1 2 3 30 30 H 1.09000 * 109.46588 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46989 * 240.00647 * 2 1 3 32 32 H 1.08995 * 109.47541 * 120.00601 * 2 1 3 33 33 H 1.09006 * 109.46656 * 60.00443 * 3 2 1 34 34 H 1.08995 * 109.47400 * 300.00687 * 3 2 1 35 35 H 0.96997 * 119.99445 * 94.99673 * 6 4 3 36 36 H 0.97001 * 120.00322 * 0.02562 * 8 7 6 37 37 H 0.97006 * 120.00127 * 180.02562 * 8 7 6 38 38 H 0.97000 * 120.00270 * 359.97438 * 12 10 4 39 39 H 1.09003 * 109.47636 * 65.57515 * 13 12 10 40 40 H 1.09005 * 109.47173 * 305.56847 * 13 12 10 41 41 H 1.09008 * 110.71482 * 100.02611 * 16 14 13 42 42 H 1.08999 * 110.71638 * 336.76197 * 16 14 13 43 43 H 1.09001 * 111.00600 * 277.43507 * 17 16 14 44 44 H 1.08999 * 111.00419 * 153.57497 * 17 16 14 45 45 H 1.08995 * 110.37047 * 81.82849 * 18 17 16 46 46 H 1.09004 * 110.36559 * 204.15171 * 18 17 16 47 47 H 0.96996 * 120.00452 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8529 0.8409 6 7 4.0578 0.8591 -1.2528 7 6 4.1865 -0.4775 -1.3682 8 7 4.6349 -1.0143 -2.5203 9 8 3.8974 -1.1992 -0.4334 10 6 4.0724 2.8579 0.1233 11 8 4.7692 3.3326 -0.7485 12 7 3.7472 3.5962 1.2029 13 6 4.2352 4.9724 1.3231 14 6 3.8435 5.5348 2.6911 15 1 2.7582 5.5885 2.7751 16 6 4.4545 6.9398 2.8755 17 6 4.8688 6.9452 4.3707 18 6 5.3189 5.4769 4.5739 19 7 4.3858 4.6797 3.7571 20 6 4.0751 3.3612 3.9583 21 1 3.1036 2.9858 3.6729 22 6 5.0088 2.5074 4.5292 23 7 4.6269 1.3466 5.0180 24 14 6.8076 3.0060 4.6037 25 1 7.0403 3.8411 5.8094 26 1 7.6560 1.7891 4.6732 27 1 7.1564 3.7838 3.3878 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 4.2881 1.4348 -1.9987 36 1 4.8652 -0.4386 -3.2663 37 1 4.7272 -1.9763 -2.6036 38 1 3.1896 3.2168 1.9000 39 1 3.7919 5.5850 0.5381 40 1 5.3206 4.9831 1.2231 41 1 3.7112 7.7124 2.6785 42 1 5.3258 7.0687 2.2334 43 1 4.0197 7.1856 5.0105 44 1 5.6949 7.6347 4.5447 45 1 6.3417 5.3415 4.2224 46 1 5.2377 5.1971 5.6243 47 1 5.2794 0.7498 5.4166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493156132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:01 Heat of formation + Delta-G solvation = -53.312408 kcal Electronic energy + Delta-G solvation = -27877.977034 eV Core-core repulsion = 24096.070965 eV Total energy + Delta-G solvation = -3781.906069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.27121 -39.01641 -37.90959 -35.51454 -34.12061 -33.71303 -32.72541 -32.69218 -30.04396 -29.94711 -28.39790 -25.30055 -24.44954 -23.41339 -21.28606 -21.10697 -20.62349 -19.81657 -19.47736 -18.32388 -17.52669 -16.93656 -16.05723 -15.89089 -15.60142 -15.40111 -15.11534 -14.66978 -14.42772 -14.08729 -13.79192 -13.46530 -13.30912 -13.09019 -12.96500 -12.69244 -12.58258 -12.25000 -11.74149 -11.51036 -11.36948 -11.27022 -11.18169 -10.96750 -10.90005 -10.69838 -10.55420 -10.36726 -10.13149 -10.04303 -10.00157 -9.55142 -9.54124 -9.38439 -8.81786 -8.76059 -8.36348 -7.03677 -6.05731 -3.46263 2.90383 3.05832 3.30585 3.38087 3.45489 3.48078 3.83286 4.46909 4.58783 4.86709 4.99891 5.14400 5.19370 5.24159 5.27494 5.36011 5.44032 5.54038 5.61360 5.78949 5.80494 5.87545 5.90346 6.05627 6.06979 6.08694 6.11975 6.21553 6.27411 6.29339 6.35214 6.46541 6.61601 6.62955 6.72815 6.73964 6.79138 6.80402 6.98101 7.07470 7.69176 8.07040 8.14149 8.20648 8.66548 8.74188 8.77264 9.57038 10.11624 11.08779 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.013923 B = 0.004636 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.594195 B = 6038.862741 C = 6459.060570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.122 4.122 4 C 0.145 3.855 5 H 0.121 0.879 6 N -0.724 5.724 7 C 0.705 3.295 8 N -0.871 5.871 9 O -0.584 6.584 10 C 0.509 3.491 11 O -0.566 6.566 12 N -0.691 5.691 13 C 0.115 3.885 14 C 0.144 3.856 15 H 0.050 0.950 16 C -0.123 4.123 17 C -0.131 4.131 18 C 0.111 3.889 19 N -0.602 5.602 20 C -0.252 4.252 21 H 0.087 0.913 22 C 0.037 3.963 23 N -0.899 5.899 24 Si 0.888 3.112 25 H -0.285 1.285 26 H -0.303 1.303 27 H -0.274 1.274 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.402 0.598 36 H 0.395 0.605 37 H 0.413 0.587 38 H 0.416 0.584 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.024 0.976 46 H 0.056 0.944 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.030 3.626 -12.223 13.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.161 4.161 4 C 0.036 3.964 5 H 0.139 0.861 6 N -0.381 5.381 7 C 0.404 3.596 8 N -0.439 5.439 9 O -0.461 6.461 10 C 0.294 3.706 11 O -0.446 6.446 12 N -0.344 5.344 13 C -0.011 4.011 14 C 0.037 3.963 15 H 0.067 0.933 16 C -0.162 4.162 17 C -0.169 4.169 18 C -0.014 4.014 19 N -0.328 5.328 20 C -0.379 4.379 21 H 0.104 0.896 22 C -0.164 4.164 23 N -0.540 5.540 24 Si 0.718 3.282 25 H -0.212 1.212 26 H -0.231 1.231 27 H -0.200 1.200 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.238 0.762 36 H 0.222 0.778 37 H 0.244 0.756 38 H 0.257 0.743 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.041 0.959 46 H 0.075 0.925 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.830 3.242 -11.782 12.806 hybrid contribution 1.310 0.101 -0.343 1.358 sum -2.520 3.343 -12.125 12.828 Atomic orbital electron populations 1.21797 0.96608 1.01192 1.01248 1.21554 0.94554 0.95514 1.03633 1.21976 0.92772 0.98710 1.02631 1.20711 0.94869 0.92358 0.88496 0.86123 1.44742 1.71171 1.05309 1.16909 1.15865 0.78132 0.82362 0.83286 1.42958 1.74080 1.11536 1.15309 1.91014 1.56584 1.60064 1.38484 1.20438 0.80502 0.87335 0.82366 1.90604 1.39525 1.73029 1.41471 1.46108 1.52100 1.14219 1.21973 1.21928 0.99440 0.81879 0.97849 1.21354 0.97298 0.90253 0.87432 0.93257 1.22525 1.00461 0.96114 0.97091 1.22715 1.00656 0.97500 0.96064 1.21968 0.93415 0.89834 0.96162 1.44799 1.51701 1.08167 1.28088 1.18308 0.97962 0.81589 1.40026 0.89601 1.25225 0.97703 0.94921 0.98584 1.69763 1.34307 1.10288 1.39633 0.86855 0.86722 0.76349 0.78253 1.21210 1.23086 1.19978 0.92704 0.93504 0.93071 0.91830 0.90740 0.90312 0.91806 0.76216 0.77769 0.75567 0.74294 0.92926 0.92074 0.91336 0.91440 0.91252 0.91789 0.95891 0.92526 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.12 -1.70 4.54 -26.73 -0.12 -1.82 16 3 C -0.12 -1.76 4.83 -26.73 -0.13 -1.89 16 4 C 0.14 2.43 2.67 -69.08 -0.18 2.24 16 5 H 0.12 2.40 7.58 -51.93 -0.39 2.00 16 6 N -0.72 -10.59 4.91 -59.81 -0.29 -10.88 16 7 C 0.71 10.51 7.41 -86.92 -0.64 9.87 16 8 N -0.87 -8.59 8.88 27.63 0.25 -8.35 16 9 O -0.58 -11.06 14.31 5.29 0.08 -10.98 16 10 C 0.51 9.42 7.22 -10.99 -0.08 9.34 16 11 O -0.57 -11.43 15.83 5.56 0.09 -11.34 16 12 N -0.69 -12.84 4.69 -60.29 -0.28 -13.12 16 13 C 0.12 2.06 5.25 -4.04 -0.02 2.04 16 14 C 0.14 2.54 3.41 -66.95 -0.23 2.31 16 15 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 16 C -0.12 -1.80 6.48 -24.90 -0.16 -1.96 16 17 C -0.13 -2.03 7.09 -24.58 -0.17 -2.20 16 18 C 0.11 2.27 4.80 -2.53 -0.01 2.26 16 19 N -0.60 -13.14 2.80 -162.57 -0.46 -13.59 16 20 C -0.25 -6.35 8.43 -15.06 -0.13 -6.48 16 21 H 0.09 2.24 6.80 -52.49 -0.36 1.88 16 22 C 0.04 1.02 5.47 -17.43 -0.10 0.92 16 23 N -0.90 -26.28 13.97 55.49 0.78 -25.51 16 24 Si 0.89 22.52 24.39 -169.99 -4.15 18.37 16 25 H -0.29 -6.99 6.88 56.52 0.39 -6.60 16 26 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 27 H -0.27 -7.02 6.68 56.52 0.38 -6.64 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.98 5.64 -51.93 -0.29 0.68 16 32 H 0.07 1.28 7.84 -51.93 -0.41 0.88 16 33 H 0.08 1.13 7.43 -51.93 -0.39 0.74 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.40 5.27 7.80 -40.82 -0.32 4.95 16 36 H 0.39 2.74 8.84 -40.82 -0.36 2.38 16 37 H 0.41 3.52 8.93 -40.82 -0.36 3.15 16 38 H 0.42 7.97 4.97 -40.82 -0.20 7.77 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.24 8.07 -51.93 -0.42 0.82 16 41 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 42 H 0.07 0.96 7.81 -51.93 -0.41 0.55 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.02 0.51 5.24 -51.93 -0.27 0.24 16 46 H 0.06 1.23 7.51 -51.93 -0.39 0.84 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -32.59 363.99 -7.66 -40.25 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -7.55 Total: 16.54 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: -1.61 Total: 13.13 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -0.01 Total: -71.45 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.16 Total: -22.32 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.15 Total: 18.37 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.59 -7.66 -40.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493156132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.061 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds