Wall clock time and date at job start Fri Apr 10 2020 18:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 C 1.52994 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47008 * 305.00767 * 4 3 2 6 6 N 1.46504 * 109.47185 * 65.00261 * 4 3 2 7 7 C 1.34773 * 119.99785 * 275.00073 * 6 4 3 8 8 N 1.34777 * 119.99550 * 179.97438 * 7 6 4 9 9 O 1.21585 * 120.00548 * 0.02562 * 7 6 4 10 10 C 1.50698 * 109.47368 * 185.00391 * 4 3 2 11 11 O 1.21282 * 120.00158 * 240.00339 * 10 4 3 12 12 N 1.34775 * 119.99739 * 60.00174 * 10 4 3 13 13 C 1.46501 * 119.99725 * 180.02562 * 12 10 4 14 14 C 1.53004 * 109.47298 * 185.57208 * 13 12 10 15 15 H 1.08992 * 109.99734 * 296.33444 * 14 13 12 16 16 C 1.54325 * 109.88662 * 175.23104 * 14 13 12 17 17 C 1.55150 * 102.94655 * 218.39071 * 16 14 13 18 18 C 1.54914 * 101.57955 * 35.50519 * 17 16 14 19 19 N 1.47027 * 109.88001 * 57.42768 * 14 13 12 20 20 C 1.36940 * 125.64586 * 298.32397 * 19 14 13 21 21 H 1.07996 * 119.99842 * 330.52092 * 20 19 14 22 22 C 1.38807 * 119.99944 * 150.52509 * 20 19 14 23 23 N 1.31625 * 120.00289 * 163.61632 * 22 20 19 24 24 Si 1.86807 * 120.00006 * 343.61715 * 22 20 19 25 25 H 1.48497 * 109.47232 * 84.84969 * 24 22 20 26 26 H 1.48501 * 109.46930 * 204.84895 * 24 22 20 27 27 H 1.48493 * 109.46846 * 324.84569 * 24 22 20 28 28 H 1.09004 * 109.46473 * 299.99355 * 1 2 3 29 29 H 1.08995 * 109.47541 * 59.99399 * 1 2 3 30 30 H 1.09000 * 109.46588 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46989 * 240.00647 * 2 1 3 32 32 H 1.08995 * 109.47541 * 120.00601 * 2 1 3 33 33 H 1.09006 * 109.46656 * 60.00443 * 3 2 1 34 34 H 1.08995 * 109.47400 * 300.00687 * 3 2 1 35 35 H 0.96997 * 119.99445 * 94.99673 * 6 4 3 36 36 H 0.97001 * 120.00322 * 0.02562 * 8 7 6 37 37 H 0.97006 * 120.00127 * 180.02562 * 8 7 6 38 38 H 0.97000 * 120.00270 * 359.97438 * 12 10 4 39 39 H 1.09003 * 109.47636 * 65.57515 * 13 12 10 40 40 H 1.09005 * 109.47173 * 305.56847 * 13 12 10 41 41 H 1.09008 * 110.71482 * 100.02611 * 16 14 13 42 42 H 1.08999 * 110.71638 * 336.76197 * 16 14 13 43 43 H 1.09001 * 111.00600 * 277.43507 * 17 16 14 44 44 H 1.08999 * 111.00419 * 153.57497 * 17 16 14 45 45 H 1.08995 * 110.37047 * 81.82849 * 18 17 16 46 46 H 1.09004 * 110.36559 * 204.15171 * 18 17 16 47 47 H 0.96996 * 120.00452 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8529 0.8409 6 7 4.0578 0.8591 -1.2528 7 6 4.1865 -0.4775 -1.3682 8 7 4.6349 -1.0143 -2.5203 9 8 3.8974 -1.1992 -0.4334 10 6 4.0724 2.8579 0.1233 11 8 4.7692 3.3326 -0.7485 12 7 3.7472 3.5962 1.2029 13 6 4.2352 4.9724 1.3231 14 6 3.8435 5.5348 2.6911 15 1 2.7582 5.5885 2.7751 16 6 4.4545 6.9398 2.8755 17 6 4.8688 6.9452 4.3707 18 6 5.3189 5.4769 4.5739 19 7 4.3858 4.6797 3.7571 20 6 4.0751 3.3612 3.9583 21 1 3.1036 2.9858 3.6729 22 6 5.0088 2.5074 4.5292 23 7 4.6269 1.3466 5.0180 24 14 6.8076 3.0060 4.6037 25 1 7.0403 3.8411 5.8094 26 1 7.6560 1.7891 4.6732 27 1 7.1564 3.7838 3.3878 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 4.2881 1.4348 -1.9987 36 1 4.8652 -0.4386 -3.2663 37 1 4.7272 -1.9763 -2.6036 38 1 3.1896 3.2168 1.9000 39 1 3.7919 5.5850 0.5381 40 1 5.3206 4.9831 1.2231 41 1 3.7112 7.7124 2.6785 42 1 5.3258 7.0687 2.2334 43 1 4.0197 7.1856 5.0105 44 1 5.6949 7.6347 4.5447 45 1 6.3417 5.3415 4.2224 46 1 5.2377 5.1971 5.6243 47 1 5.2794 0.7498 5.4166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493156132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:00 Heat of formation + Delta-G solvation = -80.225051 kcal Electronic energy + Delta-G solvation = -27879.144054 eV Core-core repulsion = 24096.070965 eV Total energy + Delta-G solvation = -3783.073089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.60300 -40.41703 -39.40550 -36.78441 -35.57692 -34.94649 -34.64517 -33.81496 -31.79116 -31.33082 -29.68053 -26.74067 -26.02875 -24.93930 -22.67868 -22.30687 -21.88941 -21.34250 -20.90506 -19.59125 -18.97612 -18.45282 -17.39800 -17.32129 -17.09890 -16.90325 -16.72195 -15.95572 -15.79253 -15.29620 -15.19023 -15.13692 -14.86774 -14.62383 -14.32657 -14.17524 -14.00302 -13.50735 -13.39978 -13.01871 -12.77596 -12.72152 -12.63991 -12.53826 -12.28923 -12.09011 -11.97593 -11.79386 -11.63445 -11.56457 -11.34252 -11.29069 -10.85978 -10.79101 -10.61599 -10.06140 -9.89243 -8.90558 -8.18100 -5.50495 1.24042 1.35143 1.40235 1.54785 1.70645 2.17616 2.37645 2.46737 3.12750 3.30938 3.55242 3.68402 3.88962 3.92915 4.02050 4.04350 4.17944 4.25751 4.33626 4.37928 4.49435 4.67685 4.70479 4.74327 4.75855 4.83894 4.89024 4.98759 5.04420 5.05665 5.17331 5.25082 5.28125 5.30817 5.41599 5.51261 5.52893 5.56877 5.78182 5.87033 6.04244 6.11953 6.60024 6.78674 7.06333 7.20408 7.55373 7.65977 8.17803 9.00336 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.013923 B = 0.004636 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.594195 B = 6038.862741 C = 6459.060570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.113 4.113 4 C 0.151 3.849 5 H 0.083 0.917 6 N -0.718 5.718 7 C 0.700 3.300 8 N -0.845 5.845 9 O -0.629 6.629 10 C 0.509 3.491 11 O -0.581 6.581 12 N -0.695 5.695 13 C 0.117 3.883 14 C 0.139 3.861 15 H 0.064 0.936 16 C -0.114 4.114 17 C -0.117 4.117 18 C 0.099 3.901 19 N -0.619 5.619 20 C -0.213 4.213 21 H 0.075 0.925 22 C -0.018 4.018 23 N -0.945 5.945 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.321 1.321 27 H -0.279 1.279 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.412 0.588 36 H 0.413 0.587 37 H 0.422 0.578 38 H 0.412 0.588 39 H 0.082 0.918 40 H 0.036 0.964 41 H 0.107 0.893 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.009 0.991 46 H 0.037 0.963 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.898 6.454 -14.091 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.152 4.152 4 C 0.041 3.959 5 H 0.100 0.900 6 N -0.376 5.376 7 C 0.398 3.602 8 N -0.415 5.415 9 O -0.510 6.510 10 C 0.295 3.705 11 O -0.463 6.463 12 N -0.347 5.347 13 C -0.009 4.009 14 C 0.033 3.967 15 H 0.081 0.919 16 C -0.152 4.152 17 C -0.155 4.155 18 C -0.026 4.026 19 N -0.345 5.345 20 C -0.342 4.342 21 H 0.092 0.908 22 C -0.215 4.215 23 N -0.590 5.590 24 Si 0.762 3.238 25 H -0.200 1.200 26 H -0.251 1.251 27 H -0.205 1.205 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.249 0.751 36 H 0.243 0.757 37 H 0.256 0.744 38 H 0.252 0.748 39 H 0.100 0.900 40 H 0.055 0.945 41 H 0.126 0.874 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.027 0.973 46 H 0.055 0.945 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.676 6.141 -13.717 15.739 hybrid contribution 1.550 -0.712 0.157 1.713 sum -3.126 5.429 -13.560 14.937 Atomic orbital electron populations 1.21755 0.94417 1.01882 1.02253 1.21437 0.96370 0.95157 1.01665 1.21925 0.90876 0.98745 1.03607 1.20508 0.96413 0.90699 0.88271 0.89951 1.44594 1.71180 1.05452 1.16354 1.16079 0.78106 0.82090 0.83920 1.42700 1.72262 1.12325 1.14190 1.90998 1.58555 1.60959 1.40450 1.20648 0.80070 0.87759 0.82071 1.90585 1.40131 1.73557 1.41997 1.46170 1.51962 1.14799 1.21770 1.21958 0.98070 0.81843 0.99022 1.21616 0.98021 0.91328 0.85725 0.91859 1.22567 1.01591 0.94661 0.96359 1.22674 1.01996 0.93920 0.96949 1.22070 0.92534 0.93288 0.94692 1.45011 1.51725 1.07453 1.30292 1.18348 0.96803 0.82998 1.36099 0.90757 1.25669 1.00024 0.95363 1.00413 1.69864 1.34559 1.11735 1.42889 0.86151 0.84213 0.75106 0.78288 1.20043 1.25080 1.20481 0.92557 0.91550 0.92627 0.92376 0.94218 0.90356 0.89571 0.75062 0.75651 0.74449 0.74789 0.90005 0.94540 0.87431 0.90840 0.90045 0.89062 0.97331 0.94505 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.91 71.98 0.71 -2.74 16 2 C -0.11 -3.24 4.54 30.60 0.14 -3.11 16 3 C -0.11 -3.21 4.83 30.59 0.15 -3.07 16 4 C 0.15 5.16 2.67 44.24 0.12 5.28 16 5 H 0.08 3.50 7.58 -2.38 -0.02 3.48 16 6 N -0.72 -20.82 4.91 -461.42 -2.27 -23.09 16 7 C 0.70 20.85 7.41 179.06 1.33 22.17 16 8 N -0.84 -15.59 8.88 -184.75 -1.64 -17.23 16 9 O -0.63 -24.65 14.31 -3.98 -0.06 -24.71 16 10 C 0.51 18.70 7.22 87.66 0.63 19.34 16 11 O -0.58 -22.90 15.83 -3.04 -0.05 -22.95 16 12 N -0.70 -25.44 4.69 -463.05 -2.17 -27.61 16 13 C 0.12 3.94 5.25 86.38 0.45 4.39 16 14 C 0.14 4.52 3.41 45.34 0.15 4.67 16 15 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 16 C -0.11 -2.79 6.48 31.78 0.21 -2.58 16 17 C -0.12 -3.16 7.09 31.99 0.23 -2.94 16 18 C 0.10 3.89 4.80 86.86 0.42 4.31 16 19 N -0.62 -26.36 2.80 -668.25 -1.87 -28.23 16 20 C -0.21 -10.90 8.43 84.03 0.71 -10.19 16 21 H 0.08 3.95 6.80 -2.91 -0.02 3.93 16 22 C -0.02 -1.04 5.47 84.86 0.46 -0.58 16 23 N -0.94 -57.75 13.97 21.65 0.30 -57.45 16 24 Si 0.93 47.86 24.39 68.60 1.67 49.53 16 25 H -0.27 -13.36 6.88 99.48 0.68 -12.67 16 26 H -0.32 -17.32 7.11 99.48 0.71 -16.61 16 27 H -0.28 -14.29 6.68 99.48 0.66 -13.63 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.79 5.64 -2.38 -0.01 1.78 16 32 H 0.04 1.45 7.84 -2.39 -0.02 1.43 16 33 H 0.08 2.23 7.43 -2.38 -0.02 2.22 16 34 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.41 10.31 7.80 -92.71 -0.72 9.58 16 36 H 0.41 4.85 8.84 -92.71 -0.82 4.03 16 37 H 0.42 6.64 8.93 -92.70 -0.83 5.81 16 38 H 0.41 15.84 4.97 -92.71 -0.46 15.38 16 39 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.04 1.42 8.07 -2.38 -0.02 1.40 16 41 H 0.11 1.90 8.14 -2.38 -0.02 1.89 16 42 H 0.07 1.76 7.81 -2.39 -0.02 1.74 16 43 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.01 0.38 5.24 -2.39 -0.01 0.37 16 46 H 0.04 1.58 7.51 -2.38 -0.02 1.56 16 47 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -73.99 363.99 -2.25 -76.24 By element: Atomic # 1 Polarization: 42.43 SS G_CDS: -1.88 Total: 40.55 kcal Atomic # 6 Polarization: 29.25 SS G_CDS: 5.71 Total: 34.96 kcal Atomic # 7 Polarization: -145.97 SS G_CDS: -7.65 Total: -153.62 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: -0.11 Total: -47.66 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 1.67 Total: 49.53 kcal Total: -73.99 -2.25 -76.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493156132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.983 kcal (2) G-P(sol) polarization free energy of solvation -73.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds