Wall clock time and date at job start Fri Apr 10 2020 18:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47066 * 2 1 4 4 N 1.46499 * 109.47153 * 119.99504 * 2 1 3 5 5 C 1.36934 * 120.00516 * 302.24463 * 4 2 1 6 6 H 1.07996 * 119.99937 * 321.91110 * 5 4 2 7 7 C 1.38808 * 120.00290 * 141.90898 * 5 4 2 8 8 N 1.31620 * 120.00029 * 338.45649 * 7 5 4 9 9 Si 1.86796 * 120.00127 * 158.45995 * 7 5 4 10 10 H 1.48499 * 109.47381 * 89.99916 * 9 7 5 11 11 H 1.48504 * 109.47222 * 209.99912 * 9 7 5 12 12 H 1.48503 * 109.47146 * 329.99804 * 9 7 5 13 13 C 1.46508 * 119.99754 * 122.23984 * 4 2 1 14 14 C 1.53000 * 109.46934 * 90.00214 * 13 4 2 15 15 C 1.53002 * 109.46724 * 179.97438 * 14 13 4 16 16 N 1.46508 * 109.46832 * 180.02562 * 15 14 13 17 17 C 1.34766 * 119.99791 * 180.02562 * 16 15 14 18 18 O 1.21281 * 120.00329 * 359.97438 * 17 16 15 19 19 C 1.50709 * 120.00043 * 179.97438 * 17 16 15 20 20 H 1.09007 * 110.59772 * 321.32807 * 19 17 16 21 21 C 1.54104 * 110.54708 * 84.10200 * 19 17 16 22 22 N 1.47056 * 103.85955 * 118.36649 * 21 19 17 23 23 C 1.46496 * 125.41218 * 180.23030 * 22 21 19 24 24 C 1.33950 * 109.17930 * 0.39564 * 22 21 19 25 25 O 1.21582 * 123.04529 * 179.83768 * 24 22 21 26 26 N 1.33957 * 113.91701 * 359.56572 * 24 22 21 27 27 H 1.09004 * 109.47461 * 305.40589 * 1 2 3 28 28 H 1.09007 * 109.47357 * 65.40014 * 1 2 3 29 29 H 1.08995 * 109.47293 * 185.40474 * 1 2 3 30 30 H 1.08992 * 109.47606 * 240.00266 * 2 1 3 31 31 H 1.09001 * 109.47209 * 180.43707 * 3 2 1 32 32 H 1.08993 * 109.47234 * 300.43673 * 3 2 1 33 33 H 1.09001 * 109.47135 * 60.44097 * 3 2 1 34 34 H 0.97001 * 120.00217 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.46829 * 330.00199 * 13 4 2 36 36 H 1.08994 * 109.46820 * 210.00421 * 13 4 2 37 37 H 1.08998 * 109.46708 * 60.00420 * 14 13 4 38 38 H 1.08994 * 109.47443 * 300.00317 * 14 13 4 39 39 H 1.08998 * 109.47126 * 60.00748 * 15 14 13 40 40 H 1.08997 * 109.47144 * 299.99691 * 15 14 13 41 41 H 0.96996 * 119.99759 * 0.02562 * 16 15 14 42 42 H 1.08996 * 110.54642 * 237.18996 * 21 19 17 43 43 H 1.08997 * 110.55121 * 359.86025 * 21 19 17 44 44 H 1.09003 * 109.47262 * 180.21525 * 23 22 21 45 45 H 1.09001 * 109.47349 * 300.21323 * 23 22 21 46 46 H 1.08997 * 109.47350 * 60.21347 * 23 22 21 47 47 H 0.96989 * 125.41232 * 180.27225 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6500 -0.2501 2.4394 6 1 1.5672 0.8089 2.6345 7 6 1.3831 -1.1647 3.4489 8 7 1.0659 -2.4056 3.1457 9 14 1.4740 -0.6344 5.2377 10 1 0.1443 -0.1389 5.6753 11 1 1.8718 -1.7925 6.0778 12 1 2.4784 0.4500 5.3821 13 6 2.9006 -1.8524 1.0624 14 6 4.3580 -1.3871 1.0483 15 6 5.2795 -2.6006 0.9092 16 7 6.6751 -2.1550 0.8964 17 6 7.6694 -3.0574 0.7810 18 8 7.4090 -4.2383 0.6883 19 6 9.1051 -2.5991 0.7672 20 1 9.2061 -1.6716 0.2034 21 6 9.6288 -2.4179 2.2051 22 7 10.7344 -3.3828 2.3015 23 6 11.5660 -3.6053 3.4869 24 6 10.8625 -4.0235 1.1322 25 8 11.7051 -4.8770 0.9327 26 7 9.9747 -3.6427 0.2042 27 1 -0.3634 0.5954 0.8376 28 1 -0.3634 0.4278 -0.9344 29 1 -0.3633 -1.0230 0.0968 30 1 1.8933 -0.5137 -0.8899 31 1 3.1299 1.4426 -0.0078 32 1 1.6702 1.9586 -0.8860 33 1 1.6831 1.9541 0.8939 34 1 0.8798 -3.0448 3.8511 35 1 2.6765 -2.3735 0.1315 36 1 2.7427 -2.5272 1.9036 37 1 4.5820 -0.8661 1.9792 38 1 4.5159 -0.7121 0.2072 39 1 5.0556 -3.1219 -0.0215 40 1 5.1215 -3.2750 1.7507 41 1 6.8834 -1.2106 0.9709 42 1 9.9901 -1.4006 2.3553 43 1 8.8499 -2.6570 2.9290 44 1 12.3079 -4.3742 3.2711 45 1 12.0716 -2.6777 3.7553 46 1 10.9373 -3.9295 4.3161 47 1 9.9149 -3.9989 -0.6960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493865967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:10 Heat of formation + Delta-G solvation = -58.472466 kcal Electronic energy + Delta-G solvation = -26319.331635 eV Core-core repulsion = 22537.201809 eV Total energy + Delta-G solvation = -3782.129826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.42318 -40.39927 -38.47917 -37.44822 -36.37563 -35.11609 -34.25465 -33.23406 -31.00880 -29.99812 -28.26200 -27.70283 -26.98853 -25.29707 -24.16773 -22.36150 -21.66509 -21.53165 -21.24540 -18.91258 -18.63106 -18.14980 -17.49733 -16.97590 -16.91418 -16.51288 -16.41962 -15.85043 -15.69500 -15.28660 -15.15502 -14.94302 -14.73630 -14.52450 -14.46441 -14.04481 -13.56465 -13.28211 -13.23154 -13.21110 -13.11891 -12.96067 -12.80995 -12.68913 -12.43457 -12.31459 -12.10111 -11.89133 -11.67392 -11.58964 -11.38101 -11.26961 -11.17961 -10.44036 -10.42255 -10.12831 -9.61656 -8.44404 -7.73425 -5.34917 1.30845 1.47310 1.51734 1.58807 1.60797 1.83823 2.17141 2.56450 2.89578 3.26810 3.32927 3.55553 3.66892 3.89299 4.10193 4.23390 4.34384 4.39609 4.47937 4.54428 4.57141 4.68022 4.70307 4.77458 4.83921 4.85164 4.91421 5.00000 5.01773 5.15464 5.20483 5.24273 5.27040 5.42859 5.55277 5.59350 5.65976 5.71621 5.79866 5.93856 5.99355 6.31081 6.53698 6.57150 7.17784 7.28034 7.40969 7.98654 8.51112 9.21795 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.002833 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.236040 B = 9879.527928 C =10785.859451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.152 3.848 3 C -0.141 4.141 4 N -0.593 5.593 5 C -0.244 4.244 6 H 0.057 0.943 7 C -0.036 4.036 8 N -0.919 5.919 9 Si 0.945 3.055 10 H -0.291 1.291 11 H -0.299 1.299 12 H -0.266 1.266 13 C 0.150 3.850 14 C -0.121 4.121 15 C 0.133 3.867 16 N -0.701 5.701 17 C 0.497 3.503 18 O -0.580 6.580 19 C 0.112 3.888 20 H 0.168 0.832 21 C 0.104 3.896 22 N -0.638 5.638 23 C 0.113 3.887 24 C 0.692 3.308 25 O -0.635 6.635 26 N -0.715 5.715 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.021 0.979 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.246 0.754 35 H 0.023 0.977 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.041 0.959 41 H 0.421 0.579 42 H 0.144 0.856 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.072 0.928 47 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.589 8.011 -4.088 18.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.046 3.954 3 C -0.200 4.200 4 N -0.314 5.314 5 C -0.375 4.375 6 H 0.074 0.926 7 C -0.233 4.233 8 N -0.563 5.563 9 Si 0.774 3.226 10 H -0.218 1.218 11 H -0.225 1.225 12 H -0.191 1.191 13 C 0.023 3.977 14 C -0.161 4.161 15 C 0.008 3.992 16 N -0.354 5.354 17 C 0.281 3.719 18 O -0.459 6.459 19 C 0.003 3.997 20 H 0.185 0.815 21 C -0.019 4.019 22 N -0.377 5.377 23 C -0.028 4.028 24 C 0.392 3.608 25 O -0.517 6.517 26 N -0.375 5.375 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.259 0.741 42 H 0.161 0.839 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.112 0.888 46 H 0.090 0.910 47 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 16.845 6.626 -3.987 18.536 hybrid contribution -0.653 -0.293 0.809 1.080 sum 16.192 6.334 -3.178 17.675 Atomic orbital electron populations 1.21990 0.98196 0.99558 1.00012 1.20662 0.92311 0.93311 0.89090 1.22020 1.00580 0.96822 1.00574 1.44081 1.52512 1.33483 1.01345 1.19027 1.39708 0.91013 0.87730 0.92591 1.25762 0.99360 0.96549 1.01666 1.70144 1.49038 1.05133 1.32007 0.85643 0.77851 0.77157 0.81965 1.21791 1.22527 1.19079 1.20688 0.87673 0.90154 0.99208 1.22112 0.95744 0.96220 1.01996 1.21134 0.80098 0.97327 1.00641 1.45894 1.05395 1.11199 1.72898 1.21376 0.88509 0.85937 0.76043 1.90758 1.85153 1.19252 1.50764 1.22150 0.85991 0.94139 0.97464 0.81481 1.22596 0.89296 0.96482 0.93548 1.47205 1.36309 1.41757 1.12412 1.21625 0.93987 1.03347 0.83880 1.16163 0.81668 0.80962 0.82037 1.90905 1.41340 1.37190 1.82314 1.44879 1.33447 1.43430 1.15775 0.94618 0.91782 0.95988 0.92359 0.92920 0.91743 0.94479 0.94450 0.95901 0.92573 0.92301 0.90912 0.92455 0.94053 0.74118 0.83866 0.89817 0.91365 0.88794 0.90959 0.72307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 9.03 71.98 0.65 -4.61 16 2 C 0.15 5.65 3.36 44.99 0.15 5.80 16 3 C -0.14 -4.37 9.20 71.98 0.66 -3.71 16 4 N -0.59 -26.28 2.36 -678.04 -1.60 -27.88 16 5 C -0.24 -12.13 8.23 84.03 0.69 -11.44 16 6 H 0.06 2.79 6.95 -2.91 -0.02 2.77 16 7 C -0.04 -1.90 4.94 84.86 0.42 -1.48 16 8 N -0.92 -51.76 11.52 21.65 0.25 -51.51 16 9 Si 0.94 42.38 29.60 68.60 2.03 44.41 16 10 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 11 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 13 C 0.15 6.27 5.27 86.38 0.46 6.73 16 14 C -0.12 -3.74 5.65 30.60 0.17 -3.57 16 15 C 0.13 3.79 5.67 86.38 0.49 4.28 16 16 N -0.70 -13.78 5.56 -463.05 -2.57 -16.35 16 17 C 0.50 11.07 6.93 87.66 0.61 11.68 16 18 O -0.58 -19.82 16.60 -3.03 -0.05 -19.87 16 19 C 0.11 1.53 4.17 44.52 0.19 1.72 16 20 H 0.17 0.66 8.14 -2.38 -0.02 0.64 16 21 C 0.10 1.19 7.32 86.65 0.63 1.83 16 22 N -0.64 -11.99 3.36 -863.44 -2.90 -14.88 16 23 C 0.11 1.57 11.21 127.77 1.43 3.01 16 24 C 0.69 18.19 8.60 179.57 1.54 19.74 16 25 O -0.64 -22.50 17.29 -3.97 -0.07 -22.57 16 26 N -0.72 -14.76 5.63 -460.31 -2.59 -17.35 16 27 H 0.03 1.45 7.80 -2.39 -0.02 1.43 16 28 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 2.00 7.78 -2.39 -0.02 1.98 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.04 1.26 7.06 -2.39 -0.02 1.25 16 34 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 35 H 0.02 0.93 7.90 -2.38 -0.02 0.91 16 36 H 0.06 2.83 5.56 -2.39 -0.01 2.82 16 37 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.42 4.94 8.47 -92.71 -0.79 4.15 16 42 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.08 1.09 7.72 -2.39 -0.02 1.07 16 44 H 0.07 1.22 7.52 -2.39 -0.02 1.20 16 45 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.43 8.51 8.96 -92.72 -0.83 7.68 16 Total: -1.00 -78.31 384.59 -0.05 -78.36 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -0.64 Total: 17.68 kcal Atomic # 6 Polarization: 21.87 SS G_CDS: 8.10 Total: 29.97 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -9.41 Total: -127.97 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -0.12 Total: -42.44 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -78.31 -0.05 -78.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493865967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.885 kcal (2) G-P(sol) polarization free energy of solvation -78.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds