Wall clock time and date at job start Fri Apr 10 2020 18:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00640 * 2 1 4 4 H 1.48495 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46779 * 300.00307 * 3 2 1 6 6 H 1.48504 * 109.47072 * 59.99699 * 3 2 1 7 7 C 1.38818 * 119.99342 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99898 * 197.37992 * 7 2 1 9 9 N 1.36935 * 120.00136 * 17.38100 * 7 2 1 10 10 C 1.46928 * 120.62677 * 207.68180 * 9 7 2 11 11 C 1.53191 * 108.77175 * 233.58222 * 10 9 7 12 12 C 1.53042 * 109.34324 * 305.34796 * 11 10 9 13 13 C 1.53111 * 109.50011 * 61.34972 * 12 11 10 14 14 H 1.08997 * 109.48693 * 58.61398 * 13 12 11 15 15 N 1.46495 * 109.51631 * 178.68865 * 13 12 11 16 16 C 1.34779 * 120.00059 * 204.87197 * 15 13 12 17 17 O 1.21276 * 119.99974 * 359.97438 * 16 15 13 18 18 C 1.50697 * 119.99931 * 179.97438 * 16 15 13 19 19 C 1.52998 * 109.47024 * 179.97438 * 18 16 15 20 20 C 1.53006 * 109.47221 * 179.97438 * 19 18 16 21 21 C 1.52998 * 109.47221 * 179.97438 * 20 19 18 22 22 N 1.46495 * 109.47151 * 180.02562 * 21 20 19 23 23 C 1.34779 * 120.00059 * 180.02562 * 22 21 20 24 24 N 1.34778 * 119.99962 * 179.97438 * 23 22 21 25 25 O 1.21584 * 119.99891 * 359.97438 * 23 22 21 26 26 C 1.46928 * 120.63227 * 27.65403 * 9 7 2 27 27 H 0.97004 * 119.99493 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.58889 * 113.79934 * 10 9 7 29 29 H 1.08996 * 109.58804 * 353.36829 * 10 9 7 30 30 H 1.08998 * 109.49729 * 65.32061 * 11 10 9 31 31 H 1.09005 * 109.49658 * 185.38085 * 11 10 9 32 32 H 1.08999 * 109.46313 * 181.39809 * 12 11 10 33 33 H 1.08998 * 109.46016 * 301.36614 * 12 11 10 34 34 H 0.97001 * 119.99787 * 24.86398 * 15 13 12 35 35 H 1.09009 * 109.47192 * 299.99738 * 18 16 15 36 36 H 1.09000 * 109.47255 * 59.99689 * 18 16 15 37 37 H 1.08995 * 109.46994 * 299.99983 * 19 18 16 38 38 H 1.09000 * 109.47211 * 59.99843 * 19 18 16 39 39 H 1.09001 * 109.47081 * 300.00194 * 20 19 18 40 40 H 1.09000 * 109.46814 * 60.00019 * 20 19 18 41 41 H 1.09009 * 109.47070 * 300.00413 * 21 20 19 42 42 H 1.09000 * 109.47211 * 60.00263 * 21 20 19 43 43 H 0.97001 * 119.99787 * 359.97438 * 22 21 20 44 44 H 0.96998 * 120.00287 * 0.02562 * 24 23 22 45 45 H 0.96998 * 119.99666 * 179.97438 * 24 23 22 46 46 H 1.08996 * 109.58356 * 246.20564 * 26 9 7 47 47 H 1.08993 * 109.58512 * 6.62776 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3461 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0532 -1.2236 0.2799 9 7 1.3723 -2.3612 -0.3532 10 6 1.8190 -3.6547 0.1815 11 6 2.0740 -4.6102 -0.9884 12 6 0.8186 -4.6909 -1.8599 13 6 0.5006 -3.3050 -2.4278 14 1 1.3493 -2.9475 -3.0108 15 7 -0.6829 -3.3880 -3.2871 16 6 -0.8699 -2.4805 -4.2660 17 8 -0.0586 -1.5951 -4.4350 18 6 -2.0871 -2.5662 -5.1503 19 6 -2.0578 -1.4261 -6.1701 20 6 -3.2933 -1.5134 -7.0685 21 6 -3.2643 -0.3729 -8.0879 22 7 -4.4475 -0.4561 -8.9476 23 6 -4.6348 0.4516 -9.9261 24 7 -5.7231 0.3747 -10.7174 25 8 -3.8219 1.3399 -10.0950 26 6 0.2277 -2.3347 -1.2741 27 1 -0.4849 0.8401 -0.0004 28 1 1.0466 -4.0687 0.8297 29 1 2.7397 -3.5174 0.7485 30 1 2.9079 -4.2404 -1.5850 31 1 2.3137 -5.6013 -0.6031 32 1 0.9894 -5.3894 -2.6791 33 1 -0.0206 -5.0372 -1.2566 34 1 -1.3319 -4.0960 -3.1517 35 1 -2.0893 -3.5224 -5.6738 36 1 -2.9863 -2.4841 -4.5398 37 1 -2.0557 -0.4702 -5.6464 38 1 -1.1585 -1.5077 -6.7807 39 1 -3.2949 -2.4694 -7.5922 40 1 -4.1927 -1.4319 -6.4582 41 1 -3.2629 0.5830 -7.5638 42 1 -2.3648 -0.4538 -8.6983 43 1 -5.0958 -1.1650 -8.8131 44 1 -6.3718 -0.3337 -10.5824 45 1 -5.8580 1.0282 -11.4213 46 1 -0.6744 -2.6409 -0.7446 47 1 0.0985 -1.3265 -1.6675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494280210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:15 Heat of formation + Delta-G solvation = -70.332553 kcal Electronic energy + Delta-G solvation = -25812.623171 eV Core-core repulsion = 22029.979053 eV Total energy + Delta-G solvation = -3782.644118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.05260 -39.47253 -37.39365 -36.17139 -34.17933 -34.03333 -33.33962 -32.63385 -30.11414 -29.70140 -28.28454 -25.24550 -24.50528 -22.25095 -21.96129 -21.54213 -21.04730 -19.85274 -19.19653 -18.48845 -17.57819 -16.74996 -16.53569 -16.27746 -15.56119 -15.41990 -15.03769 -14.79489 -14.45314 -14.31164 -14.00476 -13.64433 -13.46574 -13.15433 -12.80253 -12.53320 -12.36900 -12.27710 -12.02543 -11.67049 -11.64414 -11.28403 -10.99457 -10.74809 -10.71649 -10.68782 -10.57010 -10.46334 -10.20379 -10.02982 -9.95813 -9.91271 -9.49809 -9.28381 -9.27536 -8.48213 -8.40393 -6.63230 -5.73090 -3.16005 2.61417 2.95213 3.10757 3.44829 3.53338 3.54470 3.60584 4.17404 4.56235 4.59193 4.76662 4.86786 5.14297 5.22268 5.34671 5.38274 5.42902 5.53836 5.56183 5.60256 5.64914 5.67319 5.74219 5.80150 6.09975 6.13510 6.15872 6.17998 6.30012 6.35461 6.39469 6.43307 6.53053 6.58266 6.72007 6.79350 6.96906 7.00722 7.33184 7.64537 7.75630 7.86175 7.99782 8.33937 8.50727 8.73287 9.25831 9.89885 10.44476 11.34887 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.002559 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.210177 B =10937.598980 C =12451.398052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.291 1.291 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.116 3.884 14 H 0.080 0.920 15 N -0.724 5.724 16 C 0.506 3.494 17 O -0.533 6.533 18 C -0.138 4.138 19 C -0.102 4.102 20 C -0.129 4.129 21 C 0.134 3.866 22 N -0.745 5.745 23 C 0.702 3.298 24 N -0.870 5.870 25 O -0.593 6.593 26 C 0.167 3.833 27 H 0.253 0.747 28 H 0.018 0.982 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.391 0.609 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.396 0.604 44 H 0.396 0.604 45 H 0.414 0.586 46 H 0.016 0.984 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.941 -10.684 -15.868 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.218 1.218 7 C -0.385 4.385 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.011 3.989 14 H 0.098 0.902 15 N -0.374 5.374 16 C 0.291 3.709 17 O -0.409 6.409 18 C -0.178 4.178 19 C -0.141 4.141 20 C -0.167 4.167 21 C 0.010 3.990 22 N -0.401 5.401 23 C 0.400 3.600 24 N -0.438 5.438 25 O -0.471 6.471 26 C 0.040 3.960 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.224 0.776 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.229 0.771 44 H 0.223 0.777 45 H 0.246 0.754 46 H 0.034 0.966 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.613 -9.173 -15.958 21.764 hybrid contribution -0.777 -0.014 -0.058 0.780 sum -12.390 -9.187 -16.016 22.236 Atomic orbital electron populations 1.70029 1.05342 1.25396 1.53556 1.25031 0.95287 0.98499 1.00531 0.86240 0.79405 0.83968 0.77249 1.20219 1.21363 1.21793 1.19190 0.92749 0.84825 1.41731 0.91574 1.43983 1.36041 1.01601 1.49551 1.20954 0.97692 0.86909 0.92863 1.22005 0.97031 0.99289 0.98800 1.21680 0.98845 0.96125 0.98687 1.21955 0.87258 0.96705 0.93012 0.90154 1.46105 1.26276 1.31159 1.33878 1.20559 0.87595 0.81787 0.80945 1.90751 1.45769 1.33826 1.70526 1.21638 0.97479 1.00789 0.97877 1.21224 0.97301 0.99131 0.96432 1.21809 0.99643 0.98079 0.97172 1.21291 0.86859 0.99502 0.91342 1.45145 1.27590 1.32102 1.35305 1.16012 0.82107 0.82243 0.79644 1.43002 1.25684 1.36332 1.38811 1.90998 1.45771 1.36857 1.73450 1.21092 0.88623 0.99039 0.87264 0.93746 0.96455 0.92647 0.92141 0.92691 0.93194 0.92342 0.77606 0.89421 0.89084 0.90452 0.90786 0.91334 0.91168 0.91170 0.91301 0.77094 0.77680 0.75431 0.96631 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 11.19 55.49 0.62 -26.44 16 2 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 3 Si 0.90 22.86 29.59 -169.99 -5.03 17.83 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.26 -7.26 9.59 -15.06 -0.14 -7.41 16 8 H 0.07 1.84 7.89 -52.48 -0.41 1.43 16 9 N -0.59 -15.10 2.99 -172.32 -0.52 -15.62 16 10 C 0.14 2.97 6.52 -3.71 -0.02 2.95 16 11 C -0.13 -2.23 6.08 -26.61 -0.16 -2.39 16 12 C -0.12 -1.84 5.36 -26.65 -0.14 -1.99 16 13 C 0.12 2.26 2.60 -67.78 -0.18 2.08 16 14 H 0.08 1.80 7.58 -51.93 -0.39 1.41 16 15 N -0.72 -11.34 5.08 -53.66 -0.27 -11.61 16 16 C 0.51 8.35 7.79 -10.99 -0.09 8.27 16 17 O -0.53 -11.64 15.65 5.56 0.09 -11.55 16 18 C -0.14 -1.47 5.70 -27.89 -0.16 -1.63 16 19 C -0.10 -1.12 4.50 -26.73 -0.12 -1.24 16 20 C -0.13 -0.97 5.33 -26.73 -0.14 -1.11 16 21 C 0.13 1.26 5.67 -4.05 -0.02 1.24 16 22 N -0.75 -5.80 5.56 -65.23 -0.36 -6.16 16 23 C 0.70 7.19 8.84 -86.91 -0.77 6.42 16 24 N -0.87 -4.74 8.88 27.63 0.25 -4.49 16 25 O -0.59 -9.27 17.18 5.29 0.09 -9.18 16 26 C 0.17 4.09 4.89 -3.71 -0.02 4.07 16 27 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.39 4.63 8.60 -40.82 -0.35 4.28 16 35 H 0.09 0.70 8.14 -51.92 -0.42 0.27 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 38 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.40 1.72 8.49 -40.82 -0.35 1.37 16 44 H 0.40 0.80 8.84 -40.82 -0.36 0.44 16 45 H 0.41 1.96 8.93 -40.82 -0.36 1.60 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.09 2.75 6.04 -51.93 -0.31 2.44 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -38.28 381.73 -9.44 -47.72 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -8.01 Total: 4.44 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -2.05 Total: 9.32 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -0.29 Total: -64.32 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.18 Total: -20.73 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.03 Total: 17.83 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.28 -9.44 -47.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494280210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.613 kcal (2) G-P(sol) polarization free energy of solvation -38.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds