Wall clock time and date at job start Fri Apr 10 2020 18:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00640 * 2 1 4 4 H 1.48495 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46779 * 300.00307 * 3 2 1 6 6 H 1.48504 * 109.47072 * 59.99699 * 3 2 1 7 7 C 1.38818 * 119.99342 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99898 * 197.37992 * 7 2 1 9 9 N 1.36935 * 120.00136 * 17.38100 * 7 2 1 10 10 C 1.46928 * 120.62677 * 207.68180 * 9 7 2 11 11 C 1.53191 * 108.77175 * 233.58222 * 10 9 7 12 12 C 1.53042 * 109.34324 * 305.34796 * 11 10 9 13 13 C 1.53111 * 109.50011 * 61.34972 * 12 11 10 14 14 H 1.08997 * 109.48693 * 58.61398 * 13 12 11 15 15 N 1.46495 * 109.51631 * 178.68865 * 13 12 11 16 16 C 1.34779 * 120.00059 * 204.87197 * 15 13 12 17 17 O 1.21276 * 119.99974 * 359.97438 * 16 15 13 18 18 C 1.50697 * 119.99931 * 179.97438 * 16 15 13 19 19 C 1.52998 * 109.47024 * 179.97438 * 18 16 15 20 20 C 1.53006 * 109.47221 * 179.97438 * 19 18 16 21 21 C 1.52998 * 109.47221 * 179.97438 * 20 19 18 22 22 N 1.46495 * 109.47151 * 180.02562 * 21 20 19 23 23 C 1.34779 * 120.00059 * 180.02562 * 22 21 20 24 24 N 1.34778 * 119.99962 * 179.97438 * 23 22 21 25 25 O 1.21584 * 119.99891 * 359.97438 * 23 22 21 26 26 C 1.46928 * 120.63227 * 27.65403 * 9 7 2 27 27 H 0.97004 * 119.99493 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.58889 * 113.79934 * 10 9 7 29 29 H 1.08996 * 109.58804 * 353.36829 * 10 9 7 30 30 H 1.08998 * 109.49729 * 65.32061 * 11 10 9 31 31 H 1.09005 * 109.49658 * 185.38085 * 11 10 9 32 32 H 1.08999 * 109.46313 * 181.39809 * 12 11 10 33 33 H 1.08998 * 109.46016 * 301.36614 * 12 11 10 34 34 H 0.97001 * 119.99787 * 24.86398 * 15 13 12 35 35 H 1.09009 * 109.47192 * 299.99738 * 18 16 15 36 36 H 1.09000 * 109.47255 * 59.99689 * 18 16 15 37 37 H 1.08995 * 109.46994 * 299.99983 * 19 18 16 38 38 H 1.09000 * 109.47211 * 59.99843 * 19 18 16 39 39 H 1.09001 * 109.47081 * 300.00194 * 20 19 18 40 40 H 1.09000 * 109.46814 * 60.00019 * 20 19 18 41 41 H 1.09009 * 109.47070 * 300.00413 * 21 20 19 42 42 H 1.09000 * 109.47211 * 60.00263 * 21 20 19 43 43 H 0.97001 * 119.99787 * 359.97438 * 22 21 20 44 44 H 0.96998 * 120.00287 * 0.02562 * 24 23 22 45 45 H 0.96998 * 119.99666 * 179.97438 * 24 23 22 46 46 H 1.08996 * 109.58356 * 246.20564 * 26 9 7 47 47 H 1.08993 * 109.58512 * 6.62776 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3461 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0532 -1.2236 0.2799 9 7 1.3723 -2.3612 -0.3532 10 6 1.8190 -3.6547 0.1815 11 6 2.0740 -4.6102 -0.9884 12 6 0.8186 -4.6909 -1.8599 13 6 0.5006 -3.3050 -2.4278 14 1 1.3493 -2.9475 -3.0108 15 7 -0.6829 -3.3880 -3.2871 16 6 -0.8699 -2.4805 -4.2660 17 8 -0.0586 -1.5951 -4.4350 18 6 -2.0871 -2.5662 -5.1503 19 6 -2.0578 -1.4261 -6.1701 20 6 -3.2933 -1.5134 -7.0685 21 6 -3.2643 -0.3729 -8.0879 22 7 -4.4475 -0.4561 -8.9476 23 6 -4.6348 0.4516 -9.9261 24 7 -5.7231 0.3747 -10.7174 25 8 -3.8219 1.3399 -10.0950 26 6 0.2277 -2.3347 -1.2741 27 1 -0.4849 0.8401 -0.0004 28 1 1.0466 -4.0687 0.8297 29 1 2.7397 -3.5174 0.7485 30 1 2.9079 -4.2404 -1.5850 31 1 2.3137 -5.6013 -0.6031 32 1 0.9894 -5.3894 -2.6791 33 1 -0.0206 -5.0372 -1.2566 34 1 -1.3319 -4.0960 -3.1517 35 1 -2.0893 -3.5224 -5.6738 36 1 -2.9863 -2.4841 -4.5398 37 1 -2.0557 -0.4702 -5.6464 38 1 -1.1585 -1.5077 -6.7807 39 1 -3.2949 -2.4694 -7.5922 40 1 -4.1927 -1.4319 -6.4582 41 1 -3.2629 0.5830 -7.5638 42 1 -2.3648 -0.4538 -8.6983 43 1 -5.0958 -1.1650 -8.8131 44 1 -6.3718 -0.3337 -10.5824 45 1 -5.8580 1.0282 -11.4213 46 1 -0.6744 -2.6409 -0.7446 47 1 0.0985 -1.3265 -1.6675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494280210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:15 Heat of formation + Delta-G solvation = -102.888979 kcal Electronic energy + Delta-G solvation = -25814.034924 eV Core-core repulsion = 22029.979053 eV Total energy + Delta-G solvation = -3784.055870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93323 -40.78223 -38.98685 -37.03934 -35.76027 -34.97731 -34.42248 -34.08276 -31.93533 -31.00428 -29.49417 -27.25017 -25.49916 -23.94385 -23.38649 -22.35380 -21.98686 -21.29008 -20.70801 -19.18529 -18.75762 -18.26196 -17.76791 -17.17743 -17.10417 -16.64341 -16.33021 -15.79485 -15.74988 -15.49656 -15.27525 -15.23421 -14.85873 -14.76560 -14.16325 -14.05603 -13.86181 -13.53279 -13.29656 -12.97489 -12.71633 -12.63348 -12.54452 -12.38198 -12.23320 -12.08421 -12.05538 -11.69200 -11.58767 -11.54806 -11.52277 -11.24978 -10.75765 -10.70001 -10.57894 -10.00499 -9.97918 -8.70087 -7.91178 -5.36223 1.38031 1.43287 1.51199 1.80913 1.94445 2.15623 2.35147 2.48839 3.25041 3.64411 3.73497 3.81687 3.91737 4.01824 4.04047 4.15852 4.28174 4.32912 4.40551 4.49961 4.57200 4.65310 4.77221 4.82738 4.85231 4.90157 4.94605 5.04445 5.09168 5.20823 5.25517 5.32978 5.35751 5.41221 5.49299 5.52451 5.56114 5.61378 5.81429 5.91414 6.03372 6.35261 6.75646 7.10762 7.13027 7.48959 7.65656 7.84473 8.32593 9.13312 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.002559 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.210177 B =10937.598980 C =12451.398052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.052 4.052 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.299 1.299 6 H -0.284 1.284 7 C -0.263 4.263 8 H 0.067 0.933 9 N -0.611 5.611 10 C 0.135 3.865 11 C -0.123 4.123 12 C -0.105 4.105 13 C 0.130 3.870 14 H 0.044 0.956 15 N -0.711 5.711 16 C 0.494 3.506 17 O -0.597 6.597 18 C -0.123 4.123 19 C -0.103 4.103 20 C -0.109 4.109 21 C 0.135 3.865 22 N -0.729 5.729 23 C 0.693 3.307 24 N -0.846 5.846 25 O -0.655 6.655 26 C 0.178 3.822 27 H 0.247 0.753 28 H 0.023 0.977 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.415 0.585 35 H 0.133 0.867 36 H 0.117 0.883 37 H 0.041 0.959 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.043 0.957 42 H 0.050 0.950 43 H 0.417 0.583 44 H 0.416 0.584 45 H 0.419 0.581 46 H 0.000 1.000 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.504 -14.231 -16.684 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.247 4.247 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.227 1.227 6 H -0.211 1.211 7 C -0.393 4.393 8 H 0.085 0.915 9 N -0.335 5.335 10 C 0.010 3.990 11 C -0.162 4.162 12 C -0.143 4.143 13 C 0.023 3.977 14 H 0.063 0.937 15 N -0.363 5.363 16 C 0.283 3.717 17 O -0.478 6.478 18 C -0.162 4.162 19 C -0.142 4.142 20 C -0.147 4.147 21 C 0.010 3.990 22 N -0.386 5.386 23 C 0.391 3.609 24 N -0.416 5.416 25 O -0.537 6.537 26 C 0.051 3.949 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.252 0.748 35 H 0.151 0.849 36 H 0.135 0.865 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.254 0.746 44 H 0.247 0.753 45 H 0.252 0.748 46 H 0.018 0.982 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.255 -12.843 -16.768 24.936 hybrid contribution -0.301 1.054 0.213 1.116 sum -13.556 -11.790 -16.556 24.430 Atomic orbital electron populations 1.70170 1.06588 1.25462 1.55295 1.25769 0.96097 1.01498 1.01353 0.85317 0.78957 0.80290 0.76632 1.18785 1.22684 1.21104 1.19526 0.93019 0.86298 1.40483 0.91522 1.44274 1.36071 1.02647 1.50500 1.21186 0.97509 0.85626 0.94691 1.21909 0.97163 1.00072 0.97090 1.21638 0.98928 0.93964 0.99762 1.21443 0.87500 0.97735 0.91052 0.93734 1.45935 1.25741 1.31741 1.32883 1.21744 0.88495 0.80401 0.81101 1.90732 1.48425 1.36341 1.72258 1.21673 0.94934 1.02563 0.97038 1.21183 0.98518 0.97793 0.96713 1.21648 0.98375 0.98444 0.96187 1.21152 0.86977 0.99313 0.91602 1.44884 1.27402 1.32123 1.34216 1.16331 0.82468 0.81865 0.80278 1.42763 1.24472 1.36714 1.37606 1.90959 1.48195 1.39411 1.75173 1.20812 0.87971 0.97618 0.88508 0.94433 0.95922 0.92810 0.93292 0.88420 0.89527 0.90579 0.74774 0.84940 0.86506 0.94019 0.92608 0.88163 0.89111 0.93882 0.93125 0.74612 0.75293 0.74804 0.98154 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.50 11.19 21.65 0.24 -58.26 16 2 C -0.05 -3.10 4.91 84.86 0.42 -2.68 16 3 Si 0.96 48.75 29.59 68.60 2.03 50.78 16 4 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.30 -15.68 7.11 99.48 0.71 -14.97 16 6 H -0.28 -14.02 7.11 99.48 0.71 -13.32 16 7 C -0.26 -15.38 9.59 84.04 0.81 -14.57 16 8 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 9 N -0.61 -32.00 2.99 -699.09 -2.09 -34.10 16 10 C 0.13 5.50 6.52 86.36 0.56 6.06 16 11 C -0.12 -3.83 6.08 30.67 0.19 -3.64 16 12 C -0.10 -3.01 5.36 30.65 0.16 -2.85 16 13 C 0.13 5.00 2.60 45.09 0.12 5.12 16 14 H 0.04 2.05 7.58 -2.39 -0.02 2.04 16 15 N -0.71 -21.32 5.08 -442.07 -2.25 -23.57 16 16 C 0.49 16.24 7.79 87.66 0.68 16.92 16 17 O -0.60 -27.58 15.65 -3.02 -0.05 -27.63 16 18 C -0.12 -2.31 5.70 29.85 0.17 -2.14 16 19 C -0.10 -2.23 4.50 30.60 0.14 -2.09 16 20 C -0.11 -1.37 5.33 30.60 0.16 -1.20 16 21 C 0.13 2.52 5.67 86.38 0.49 3.01 16 22 N -0.73 -10.25 5.56 -478.54 -2.66 -12.91 16 23 C 0.69 13.78 8.84 179.05 1.58 15.36 16 24 N -0.85 -7.75 8.88 -184.75 -1.64 -9.39 16 25 O -0.65 -21.22 17.18 -3.98 -0.07 -21.29 16 26 C 0.18 9.00 4.89 86.36 0.42 9.42 16 27 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.05 2.16 7.93 -2.39 -0.02 2.14 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.42 8.42 8.60 -92.71 -0.80 7.63 16 35 H 0.13 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.04 1.18 8.10 -2.39 -0.02 1.16 16 38 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 39 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.42 2.26 8.49 -92.71 -0.79 1.47 16 44 H 0.42 0.49 8.84 -92.71 -0.82 -0.33 16 45 H 0.42 3.39 8.93 -92.71 -0.83 2.56 16 46 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 47 H 0.04 2.56 6.04 -2.39 -0.01 2.54 16 Total: -1.00 -92.98 381.73 -2.81 -95.79 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -2.23 Total: 13.84 kcal Atomic # 6 Polarization: 20.82 SS G_CDS: 5.90 Total: 26.72 kcal Atomic # 7 Polarization: -129.82 SS G_CDS: -8.40 Total: -138.22 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -0.12 Total: -48.92 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 2.03 Total: 50.78 kcal Total: -92.98 -2.81 -95.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494280210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.096 kcal (2) G-P(sol) polarization free energy of solvation -92.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds