Wall clock time and date at job start Fri Apr 10 2020 18:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 111.00007 * 2 1 4 4 C 1.46906 * 110.99504 * 123.94987 * 2 1 3 5 5 C 1.53000 * 109.47077 * 66.04751 * 4 2 1 6 6 C 1.53002 * 109.47093 * 179.97438 * 5 4 2 7 7 C 1.50692 * 109.46933 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00514 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00098 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00149 * 179.97438 * 9 7 6 11 11 C 1.53514 * 114.16836 * 204.99631 * 10 9 7 12 12 N 1.47482 * 87.93039 * 220.13972 * 11 10 9 13 13 C 1.46901 * 110.99764 * 138.70591 * 12 11 10 14 14 C 1.50701 * 109.46921 * 169.99672 * 13 12 11 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00273 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46986 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47457 * 119.99901 * 21 19 17 24 24 H 1.48501 * 109.47104 * 239.99973 * 21 19 17 25 25 C 1.47480 * 87.83699 * 27.01095 * 12 11 10 26 26 H 1.08993 * 109.47253 * 296.05197 * 1 2 3 27 27 H 1.09000 * 109.46658 * 56.04905 * 1 2 3 28 28 H 1.08991 * 109.47245 * 176.04554 * 1 2 3 29 29 H 1.09004 * 109.46858 * 183.94847 * 3 2 1 30 30 H 1.08998 * 109.47133 * 303.95144 * 3 2 1 31 31 H 1.08995 * 109.47498 * 63.95458 * 3 2 1 32 32 H 1.08996 * 109.47033 * 306.04665 * 4 2 1 33 33 H 1.09001 * 109.46755 * 186.04647 * 4 2 1 34 34 H 1.09004 * 109.46993 * 59.99964 * 5 4 2 35 35 H 1.08997 * 109.47206 * 300.00107 * 5 4 2 36 36 H 1.08996 * 109.46856 * 60.00012 * 6 5 4 37 37 H 1.09001 * 109.46916 * 300.00004 * 6 5 4 38 38 H 0.96996 * 119.99685 * 359.97438 * 9 7 6 39 39 H 1.08999 * 113.25779 * 337.94959 * 10 9 7 40 40 H 1.08994 * 113.47382 * 105.36815 * 11 10 9 41 41 H 1.09003 * 113.47448 * 334.90723 * 11 10 9 42 42 H 1.09002 * 109.47401 * 49.99700 * 13 12 11 43 43 H 1.09001 * 109.46874 * 289.99713 * 13 12 11 44 44 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 45 45 H 0.97000 * 119.99884 * 180.02562 * 20 19 17 46 46 H 1.08999 * 113.47664 * 87.75895 * 25 12 11 47 47 H 1.08994 * 113.47488 * 218.22090 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6313 -2.2426 0.9705 6 6 2.1801 -3.0404 2.1551 7 6 1.8221 -4.4949 1.9901 8 8 1.1898 -4.8576 1.0208 9 7 2.2036 -5.3926 2.9203 10 6 1.8550 -6.8065 2.7601 11 6 1.7898 -7.5909 4.0781 12 7 2.4408 -8.7148 3.3794 13 6 3.4576 -9.3462 4.2312 14 6 3.9244 -10.6277 3.5902 15 8 3.4566 -10.9801 2.5281 16 7 4.8626 -11.3817 4.1968 17 6 5.2877 -12.5473 3.6134 18 1 4.8705 -12.8614 2.6681 19 6 6.2545 -13.3248 4.2389 20 7 6.7618 -12.9428 5.3894 21 14 6.8343 -14.9126 3.4437 22 1 6.1135 -15.1160 2.1615 23 1 8.2941 -14.8319 3.1841 24 1 6.5557 -16.0525 4.3539 25 6 3.0514 -7.7245 2.4730 26 1 -0.3633 0.4513 0.9232 27 1 -0.3633 0.5739 -0.8525 28 1 -0.3633 -1.0251 -0.0709 29 1 3.0828 1.3432 -0.0708 30 1 1.5899 1.9163 -0.8524 31 1 1.7045 1.8724 0.9232 32 1 1.5610 -0.3871 2.0628 33 1 3.0796 -0.6611 1.1758 34 1 2.0658 -2.6214 0.0453 35 1 0.5471 -2.3474 0.9324 36 1 1.7460 -2.6617 3.0804 37 1 3.2644 -2.9355 2.1928 38 1 2.7089 -5.1024 3.6957 39 1 1.0010 -6.9674 2.1022 40 1 0.7728 -7.8116 4.4022 41 1 2.4012 -7.1597 4.8708 42 1 3.0279 -9.5644 5.2089 43 1 4.3039 -8.6695 4.3491 44 1 5.2370 -11.0996 5.0459 45 1 7.4370 -13.4855 5.8258 46 1 3.9996 -7.3290 2.8373 47 1 3.1036 -8.0585 1.4368 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494446163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:18 Heat of formation + Delta-G solvation = -31.103692 kcal Electronic energy + Delta-G solvation = -24967.672296 eV Core-core repulsion = 21186.729269 eV Total energy + Delta-G solvation = -3780.943027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.65829 -39.32023 -38.01395 -37.66454 -34.21150 -33.80719 -33.54524 -31.25423 -29.95176 -28.06535 -27.83300 -25.92264 -25.52449 -24.06528 -23.04245 -21.23763 -20.63319 -20.09008 -19.24473 -17.90083 -17.27332 -16.63228 -16.39624 -16.09537 -15.72816 -15.45206 -15.28441 -14.98498 -14.73868 -14.46399 -14.16728 -13.90256 -13.75733 -13.24223 -12.95946 -12.79802 -12.71742 -12.61070 -12.28980 -12.26529 -12.10617 -11.79418 -11.65176 -11.59837 -11.48799 -11.18794 -11.07843 -10.95691 -10.65339 -10.32928 -10.21004 -10.04004 -9.49753 -9.16767 -8.84673 -8.78938 -8.21285 -7.94644 -6.40548 -3.81107 2.44986 2.88169 3.17472 3.27931 3.35749 3.54844 3.91226 4.02945 4.23185 4.40589 4.42477 4.54907 4.66796 4.75028 4.81136 4.91018 4.96954 4.97853 5.03796 5.15698 5.17167 5.19727 5.26548 5.27446 5.31541 5.32738 5.43701 5.54858 5.59480 5.64749 5.66880 5.79499 5.88505 6.00061 6.07170 6.23662 6.33805 6.50149 6.58486 6.60812 7.10675 7.30367 7.56917 8.05086 8.07830 8.63637 9.20197 9.55906 10.08501 10.77455 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.034808 B = 0.001738 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.217819 B =16104.016355 C =16275.378116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.548 5.548 3 C 0.024 3.976 4 C 0.054 3.946 5 C -0.102 4.102 6 C -0.140 4.140 7 C 0.514 3.486 8 O -0.535 6.535 9 N -0.721 5.721 10 C 0.118 3.882 11 C -0.014 4.014 12 N -0.435 5.435 13 C 0.011 3.989 14 C 0.446 3.554 15 O -0.573 6.573 16 N -0.568 5.568 17 C -0.297 4.297 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.904 5.904 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.008 4.008 26 H 0.024 0.976 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.024 0.976 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.400 0.600 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.391 0.609 45 H 0.270 0.730 46 H 0.069 0.931 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.983 27.715 -0.549 28.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.272 5.272 3 C -0.124 4.124 4 C -0.074 4.074 5 C -0.141 4.141 6 C -0.180 4.180 7 C 0.300 3.700 8 O -0.411 6.411 9 N -0.373 5.373 10 C 0.012 3.988 11 C -0.144 4.144 12 N -0.157 5.157 13 C -0.121 4.121 14 C 0.231 3.769 15 O -0.456 6.456 16 N -0.205 5.205 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.546 5.546 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.139 4.139 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.234 0.766 39 H 0.147 0.853 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.224 0.776 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.843 26.298 -2.553 27.863 hybrid contribution 1.286 0.436 1.964 2.388 sum -7.557 26.734 -0.589 27.788 Atomic orbital electron populations 1.22466 0.87223 1.02831 1.00339 1.61940 1.08246 1.13748 1.43249 1.22387 1.00840 0.88744 1.00452 1.22177 1.00221 0.93820 0.91185 1.21341 1.02083 0.92570 0.98074 1.21638 1.03332 0.91927 1.01152 1.20712 0.78807 0.88053 0.82426 1.90734 1.39368 1.80963 1.29997 1.46021 1.57695 1.07836 1.25708 1.22684 0.99475 0.78270 0.98359 1.24316 1.02006 0.92108 0.95950 1.68792 1.20340 1.15869 1.10668 1.22499 0.94861 0.97310 0.97419 1.19651 0.83582 0.86228 0.87445 1.90539 1.58833 1.72978 1.23203 1.41869 1.35459 1.21064 1.22104 1.19760 1.19258 0.97560 1.06087 0.87878 1.25246 0.96915 0.99844 0.95993 1.69621 1.29311 1.39566 1.16054 0.85800 0.78334 0.80997 0.79232 1.19208 1.20797 1.20766 1.24398 0.96425 0.91696 1.01338 0.95711 0.91424 0.90691 0.91288 0.91321 0.95752 0.94815 0.90644 0.90106 0.91034 0.89009 0.88705 0.76584 0.85337 0.88929 0.91169 0.89262 0.92261 0.77594 0.91994 0.91239 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.32 60.07 0.56 0.69 16 2 N -0.55 -4.12 5.02 -251.26 -1.26 -5.38 16 3 C 0.02 0.14 9.57 60.07 0.57 0.71 16 4 C 0.05 0.35 4.96 -3.82 -0.02 0.33 16 5 C -0.10 -0.80 4.43 -26.73 -0.12 -0.92 16 6 C -0.14 -0.90 5.70 -27.89 -0.16 -1.06 16 7 C 0.51 5.31 7.83 -10.99 -0.09 5.22 16 8 O -0.53 -7.96 15.57 5.56 0.09 -7.88 16 9 N -0.72 -6.50 5.39 -53.54 -0.29 -6.79 16 10 C 0.12 1.41 4.59 -67.72 -0.31 1.10 16 11 C -0.01 -0.16 7.45 -7.54 -0.06 -0.22 16 12 N -0.43 -7.20 5.82 -246.09 -1.43 -8.63 16 13 C 0.01 0.20 5.30 -4.97 -0.03 0.17 16 14 C 0.45 10.75 7.85 -10.98 -0.09 10.66 16 15 O -0.57 -16.15 16.01 5.55 0.09 -16.06 16 16 N -0.57 -14.52 5.29 -10.96 -0.06 -14.58 16 17 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 18 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 21 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 25 C -0.01 -0.12 7.53 -7.54 -0.06 -0.18 16 26 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 28 H 0.07 0.54 6.47 -51.93 -0.34 0.20 16 29 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 30 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.02 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.03 0.20 8.12 -51.93 -0.42 -0.22 16 33 H 0.08 0.44 8.06 -51.93 -0.42 0.02 16 34 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.07 0.64 6.51 -51.93 -0.34 0.30 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.40 2.36 8.75 -40.82 -0.36 2.00 16 39 H 0.13 1.79 7.45 -51.93 -0.39 1.41 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 0.64 7.90 -51.93 -0.41 0.23 16 42 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 43 H 0.06 0.90 7.30 -51.93 -0.38 0.53 16 44 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.07 0.92 7.42 -51.93 -0.39 0.53 16 47 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -35.23 387.47 -9.26 -44.49 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -7.91 Total: 8.24 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -0.02 Total: 8.45 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -2.32 Total: -59.31 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: 0.18 Total: -23.94 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.23 -9.26 -44.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494446163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.384 kcal (2) G-P(sol) polarization free energy of solvation -35.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds