Wall clock time and date at job start Fri Apr 10 2020 18:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 111.00007 * 2 1 4 4 C 1.46906 * 110.99504 * 123.94987 * 2 1 3 5 5 C 1.53000 * 109.47077 * 66.04751 * 4 2 1 6 6 C 1.53002 * 109.47093 * 179.97438 * 5 4 2 7 7 C 1.50692 * 109.46933 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00514 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00098 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00149 * 179.97438 * 9 7 6 11 11 C 1.53514 * 114.16836 * 204.99631 * 10 9 7 12 12 N 1.47482 * 87.93039 * 220.13972 * 11 10 9 13 13 C 1.46901 * 110.99764 * 138.70591 * 12 11 10 14 14 C 1.50701 * 109.46921 * 169.99672 * 13 12 11 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00273 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46986 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47457 * 119.99901 * 21 19 17 24 24 H 1.48501 * 109.47104 * 239.99973 * 21 19 17 25 25 C 1.47480 * 87.83699 * 27.01095 * 12 11 10 26 26 H 1.08993 * 109.47253 * 296.05197 * 1 2 3 27 27 H 1.09000 * 109.46658 * 56.04905 * 1 2 3 28 28 H 1.08991 * 109.47245 * 176.04554 * 1 2 3 29 29 H 1.09004 * 109.46858 * 183.94847 * 3 2 1 30 30 H 1.08998 * 109.47133 * 303.95144 * 3 2 1 31 31 H 1.08995 * 109.47498 * 63.95458 * 3 2 1 32 32 H 1.08996 * 109.47033 * 306.04665 * 4 2 1 33 33 H 1.09001 * 109.46755 * 186.04647 * 4 2 1 34 34 H 1.09004 * 109.46993 * 59.99964 * 5 4 2 35 35 H 1.08997 * 109.47206 * 300.00107 * 5 4 2 36 36 H 1.08996 * 109.46856 * 60.00012 * 6 5 4 37 37 H 1.09001 * 109.46916 * 300.00004 * 6 5 4 38 38 H 0.96996 * 119.99685 * 359.97438 * 9 7 6 39 39 H 1.08999 * 113.25779 * 337.94959 * 10 9 7 40 40 H 1.08994 * 113.47382 * 105.36815 * 11 10 9 41 41 H 1.09003 * 113.47448 * 334.90723 * 11 10 9 42 42 H 1.09002 * 109.47401 * 49.99700 * 13 12 11 43 43 H 1.09001 * 109.46874 * 289.99713 * 13 12 11 44 44 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 45 45 H 0.97000 * 119.99884 * 180.02562 * 20 19 17 46 46 H 1.08999 * 113.47664 * 87.75895 * 25 12 11 47 47 H 1.08994 * 113.47488 * 218.22090 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6313 -2.2426 0.9705 6 6 2.1801 -3.0404 2.1551 7 6 1.8221 -4.4949 1.9901 8 8 1.1898 -4.8576 1.0208 9 7 2.2036 -5.3926 2.9203 10 6 1.8550 -6.8065 2.7601 11 6 1.7898 -7.5909 4.0781 12 7 2.4408 -8.7148 3.3794 13 6 3.4576 -9.3462 4.2312 14 6 3.9244 -10.6277 3.5902 15 8 3.4566 -10.9801 2.5281 16 7 4.8626 -11.3817 4.1968 17 6 5.2877 -12.5473 3.6134 18 1 4.8705 -12.8614 2.6681 19 6 6.2545 -13.3248 4.2389 20 7 6.7618 -12.9428 5.3894 21 14 6.8343 -14.9126 3.4437 22 1 6.1135 -15.1160 2.1615 23 1 8.2941 -14.8319 3.1841 24 1 6.5557 -16.0525 4.3539 25 6 3.0514 -7.7245 2.4730 26 1 -0.3633 0.4513 0.9232 27 1 -0.3633 0.5739 -0.8525 28 1 -0.3633 -1.0251 -0.0709 29 1 3.0828 1.3432 -0.0708 30 1 1.5899 1.9163 -0.8524 31 1 1.7045 1.8724 0.9232 32 1 1.5610 -0.3871 2.0628 33 1 3.0796 -0.6611 1.1758 34 1 2.0658 -2.6214 0.0453 35 1 0.5471 -2.3474 0.9324 36 1 1.7460 -2.6617 3.0804 37 1 3.2644 -2.9355 2.1928 38 1 2.7089 -5.1024 3.6957 39 1 1.0010 -6.9674 2.1022 40 1 0.7728 -7.8116 4.4022 41 1 2.4012 -7.1597 4.8708 42 1 3.0279 -9.5644 5.2089 43 1 4.3039 -8.6695 4.3491 44 1 5.2370 -11.0996 5.0459 45 1 7.4370 -13.4855 5.8258 46 1 3.9996 -7.3290 2.8373 47 1 3.1036 -8.0585 1.4368 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494446163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:17 Heat of formation + Delta-G solvation = -61.823759 kcal Electronic energy + Delta-G solvation = -24969.004418 eV Core-core repulsion = 21186.729269 eV Total energy + Delta-G solvation = -3782.275149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.71690 -40.38411 -39.49855 -38.50205 -35.97258 -35.07153 -34.16790 -33.28964 -31.23973 -28.64397 -28.42896 -27.21947 -26.95323 -25.30517 -23.93507 -21.85535 -21.47825 -21.15752 -20.89854 -19.91286 -18.06690 -17.91393 -17.57294 -17.01000 -16.59460 -16.55719 -16.35008 -16.13696 -15.80534 -15.70639 -15.52829 -14.97095 -14.93587 -14.56079 -14.24290 -13.80791 -13.69073 -13.52156 -13.27547 -13.15392 -13.03050 -12.84554 -12.72482 -12.57595 -12.43483 -12.35263 -12.24663 -12.20095 -12.12636 -11.83740 -11.52959 -11.51261 -10.94092 -10.40114 -10.07405 -10.01168 -9.77319 -9.27976 -8.47619 -5.96080 1.35647 1.40935 1.55026 1.64663 2.04981 2.08226 2.29656 2.87914 3.07876 3.18549 3.31231 3.52978 3.74125 3.80389 4.00950 4.09061 4.13418 4.24791 4.27546 4.29989 4.39229 4.44031 4.52267 4.53170 4.57488 4.67229 4.67989 4.73709 4.77302 4.78914 4.81510 4.97566 5.03610 5.03925 5.21450 5.32691 5.36465 5.40508 5.47708 5.87675 6.07010 6.09837 6.14283 6.58886 6.60892 7.13190 7.30698 7.56364 8.13824 8.69953 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.034808 B = 0.001738 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.217819 B =16104.016355 C =16275.378116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.571 5.571 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.098 4.098 6 C -0.128 4.128 7 C 0.508 3.492 8 O -0.589 6.589 9 N -0.704 5.704 10 C 0.131 3.869 11 C 0.004 3.996 12 N -0.477 5.477 13 C 0.026 3.974 14 C 0.438 3.562 15 O -0.623 6.623 16 N -0.574 5.574 17 C -0.335 4.335 18 H 0.074 0.926 19 C -0.011 4.011 20 N -0.919 5.919 21 Si 0.991 3.009 22 H -0.277 1.277 23 H -0.269 1.269 24 H -0.269 1.269 25 C -0.012 4.012 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.421 0.579 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.090 0.910 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.090 0.910 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.082 29.560 1.813 30.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.296 5.296 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.137 4.137 6 C -0.168 4.168 7 C 0.297 3.703 8 O -0.469 6.469 9 N -0.357 5.357 10 C 0.024 3.976 11 C -0.125 4.125 12 N -0.200 5.200 13 C -0.105 4.105 14 C 0.226 3.774 15 O -0.509 6.509 16 N -0.212 5.212 17 C -0.464 4.464 18 H 0.092 0.908 19 C -0.210 4.210 20 N -0.560 5.560 21 Si 0.815 3.185 22 H -0.202 1.202 23 H -0.194 1.194 24 H -0.195 1.195 25 C -0.142 4.142 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.259 0.741 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.107 0.893 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.915 28.185 -0.121 29.276 hybrid contribution 0.980 -0.113 1.190 1.546 sum -6.935 28.073 1.070 28.937 Atomic orbital electron populations 1.22433 0.87143 1.02222 1.00912 1.61936 1.08603 1.14910 1.44114 1.22406 1.01085 0.87890 1.00939 1.22144 1.00871 0.92471 0.91412 1.21254 1.00900 0.93929 0.97603 1.21644 1.04987 0.88448 1.01689 1.21486 0.77641 0.89689 0.81477 1.90725 1.41879 1.82002 1.32261 1.45823 1.57357 1.06269 1.26203 1.22227 0.97225 0.79756 0.98399 1.24326 1.02620 0.89575 0.95988 1.68707 1.20742 1.18372 1.12200 1.22378 0.96379 0.94177 0.97600 1.20901 0.82060 0.87727 0.86725 1.90505 1.60167 1.74633 1.25554 1.41924 1.36103 1.20818 1.22373 1.19671 1.21012 0.99683 1.06078 0.90765 1.25986 0.96262 1.02422 0.96377 1.69665 1.29281 1.40555 1.16473 0.84896 0.78134 0.77404 0.78045 1.20166 1.19442 1.19455 1.24437 0.98413 0.92157 0.99235 0.94961 0.91034 0.91889 0.90808 0.91095 0.95036 0.93483 0.89577 0.92983 0.92703 0.85780 0.86123 0.74126 0.87987 0.88060 0.87386 0.86713 0.89260 0.76870 0.91268 0.89249 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.32 127.69 1.19 1.46 16 2 N -0.57 -8.03 5.02 -948.86 -4.76 -12.79 16 3 C 0.02 0.25 9.57 127.69 1.22 1.47 16 4 C 0.06 0.66 4.96 86.30 0.43 1.08 16 5 C -0.10 -1.47 4.43 30.59 0.14 -1.34 16 6 C -0.13 -1.30 5.70 29.85 0.17 -1.13 16 7 C 0.51 9.89 7.83 87.65 0.69 10.58 16 8 O -0.59 -18.09 15.57 -3.03 -0.05 -18.13 16 9 N -0.70 -11.00 5.39 -441.69 -2.38 -13.38 16 10 C 0.13 3.00 4.59 45.45 0.21 3.20 16 11 C 0.00 0.08 7.45 83.58 0.62 0.70 16 12 N -0.48 -15.33 5.82 -932.48 -5.43 -20.75 16 13 C 0.03 0.87 5.30 85.56 0.45 1.33 16 14 C 0.44 21.38 7.85 87.66 0.69 22.07 16 15 O -0.62 -36.49 16.01 -3.07 -0.05 -36.54 16 16 N -0.57 -29.72 5.29 -306.98 -1.62 -31.35 16 17 C -0.33 -19.38 9.68 84.04 0.81 -18.57 16 18 H 0.07 4.65 7.16 -2.91 -0.02 4.63 16 19 C -0.01 -0.58 5.50 84.92 0.47 -0.11 16 20 N -0.92 -49.37 13.05 21.66 0.28 -49.08 16 21 Si 0.99 43.47 29.55 68.60 2.03 45.49 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 C -0.01 -0.35 7.53 83.58 0.63 0.28 16 26 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 28 H 0.06 0.94 6.47 -2.39 -0.02 0.93 16 29 H 0.07 0.65 8.12 -2.38 -0.02 0.63 16 30 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 31 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.05 0.41 8.12 -2.39 -0.02 0.39 16 33 H 0.09 0.78 8.06 -2.39 -0.02 0.76 16 34 H 0.05 1.07 8.10 -2.38 -0.02 1.05 16 35 H 0.05 1.00 6.51 -2.39 -0.02 0.98 16 36 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.42 3.17 8.75 -92.71 -0.81 2.36 16 39 H 0.10 2.95 7.45 -2.39 -0.02 2.93 16 40 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.11 1.41 7.90 -2.39 -0.02 1.39 16 42 H 0.11 3.22 8.08 -2.39 -0.02 3.20 16 43 H 0.09 2.43 7.30 -2.39 -0.02 2.41 16 44 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 45 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 46 H 0.09 2.18 7.42 -2.39 -0.02 2.17 16 47 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -81.05 387.47 -4.84 -85.88 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.57 Total: 29.64 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 7.71 Total: 21.02 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -13.91 Total: -127.36 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: -0.10 Total: -54.68 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -81.05 -4.84 -85.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494446163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.060 kcal (2) G-P(sol) polarization free energy of solvation -81.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds