Wall clock time and date at job start Fri Apr 10 2020 18:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47324 * 2 1 4 4 C 1.53003 * 109.46830 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47243 * 305.00201 * 4 3 2 6 6 N 1.46500 * 109.47260 * 65.00408 * 4 3 2 7 7 C 1.34772 * 119.99696 * 59.99418 * 6 4 3 8 8 N 1.34780 * 119.99598 * 179.97438 * 7 6 4 9 9 O 1.21580 * 120.00487 * 0.02562 * 7 6 4 10 10 C 1.50706 * 109.46959 * 185.00455 * 4 3 2 11 11 O 1.21281 * 119.99617 * 260.00228 * 10 4 3 12 12 N 1.34775 * 120.00144 * 79.99713 * 10 4 3 13 13 C 1.46503 * 119.99877 * 0.02562 * 12 10 4 14 14 C 1.46496 * 119.99898 * 179.97438 * 12 10 4 15 15 H 1.08996 * 110.88600 * 356.12293 * 14 12 10 16 16 C 1.55157 * 111.00250 * 120.00225 * 14 12 10 17 17 C 1.54330 * 102.94161 * 82.57155 * 16 14 12 18 18 N 1.47012 * 107.26812 * 22.19318 * 17 16 14 19 19 C 1.36943 * 125.64384 * 181.01969 * 18 17 16 20 20 H 1.08008 * 119.99719 * 176.06100 * 19 18 17 21 21 C 1.38810 * 120.00151 * 356.05879 * 19 18 17 22 22 N 1.31620 * 119.99754 * 211.81953 * 21 19 18 23 23 Si 1.86788 * 119.99989 * 31.81656 * 21 19 18 24 24 H 1.48497 * 109.47479 * 275.33220 * 23 21 19 25 25 H 1.48503 * 109.47361 * 35.33676 * 23 21 19 26 26 H 1.48502 * 109.47267 * 155.33214 * 23 21 19 27 27 C 1.47421 * 108.70813 * 1.28888 * 18 17 16 28 28 H 1.09001 * 109.46885 * 59.99942 * 1 2 3 29 29 H 1.09000 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47085 * 299.99842 * 1 2 3 31 31 H 1.09001 * 109.46800 * 239.99724 * 2 1 3 32 32 H 1.09003 * 109.47212 * 120.00956 * 2 1 3 33 33 H 1.09002 * 109.46768 * 60.00777 * 3 2 1 34 34 H 1.08994 * 109.47318 * 300.00212 * 3 2 1 35 35 H 0.97000 * 119.99952 * 240.00200 * 6 4 3 36 36 H 0.97000 * 120.00050 * 0.02562 * 8 7 6 37 37 H 0.96998 * 119.99893 * 180.02562 * 8 7 6 38 38 H 1.08993 * 109.47347 * 269.99642 * 13 12 10 39 39 H 1.09006 * 109.47007 * 30.00151 * 13 12 10 40 40 H 1.08999 * 109.46839 * 149.99630 * 13 12 10 41 41 H 1.09001 * 110.72194 * 324.21045 * 16 14 12 42 42 H 1.08996 * 110.72449 * 200.93501 * 16 14 12 43 43 H 1.09000 * 109.88156 * 262.77194 * 17 16 14 44 44 H 1.09005 * 110.00652 * 141.68354 * 17 16 14 45 45 H 0.97003 * 120.00169 * 354.98040 * 22 21 19 46 46 H 1.09000 * 110.36994 * 94.47949 * 27 18 17 47 47 H 1.09000 * 110.36850 * 216.80581 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 1 3.9330 0.8530 0.8427 6 7 4.0589 0.8585 -1.2509 7 6 3.7338 1.4238 -2.4303 8 7 4.1839 0.8869 -3.5817 9 8 3.0352 2.4185 -2.4557 10 6 4.0724 2.8578 0.1246 11 8 4.4469 3.4568 -0.8612 12 7 4.1055 3.4580 1.3309 13 6 3.6535 2.7342 2.5218 14 6 4.5943 4.8337 1.4514 15 1 4.9549 5.2034 0.4916 16 6 3.4965 5.7654 2.0294 17 6 3.6095 5.5305 3.5505 18 7 4.9600 5.0121 3.8129 19 6 5.4540 4.6569 5.0397 20 1 6.4409 4.2254 5.1201 21 6 4.6865 4.8512 6.1798 22 7 5.2703 5.1244 7.3274 23 14 2.8252 4.7253 6.0854 24 1 2.2624 6.0282 5.6485 25 1 2.4493 3.6713 5.1091 26 1 2.2842 4.3761 7.4235 27 6 5.6964 4.9441 2.5376 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 1.6768 1.9562 0.8901 34 1 1.6767 1.9563 -0.8899 35 1 4.6165 0.0650 -1.2307 36 1 4.7416 0.0935 -3.5615 37 1 3.9502 1.2939 -4.4306 38 1 2.5872 2.9060 2.6685 39 1 3.8349 1.6675 2.3893 40 1 4.2023 3.0905 3.3935 41 1 2.5115 5.4723 1.6661 42 1 3.7054 6.8064 1.7833 43 1 2.8642 4.8020 3.8695 44 1 3.4625 6.4692 4.0847 45 1 6.2381 5.1181 7.3929 46 1 6.2868 5.8487 2.3917 47 1 6.3385 4.0636 2.5167 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494862641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:22 Heat of formation + Delta-G solvation = -23.110568 kcal Electronic energy + Delta-G solvation = -28270.530794 eV Core-core repulsion = 24489.934375 eV Total energy + Delta-G solvation = -3780.596419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.68606 -39.25967 -37.56732 -35.89129 -34.28939 -33.88457 -33.01541 -32.35950 -29.91536 -28.98418 -28.22242 -26.17206 -24.88748 -23.57439 -22.09344 -21.32937 -20.66500 -20.03860 -18.77560 -18.53153 -17.48104 -17.29885 -16.76320 -16.06113 -15.53062 -15.26653 -15.02308 -14.64892 -14.41069 -14.18592 -14.04213 -13.55307 -13.44412 -13.32077 -12.94196 -12.72243 -12.34538 -12.27785 -11.87375 -11.81803 -11.55249 -11.40213 -11.23316 -11.17099 -10.94987 -10.88613 -10.84692 -10.74602 -10.10939 -10.04809 -9.74862 -9.66227 -9.59119 -9.22259 -8.78859 -8.46321 -8.18716 -7.04556 -6.42520 -3.16622 2.67856 2.96595 3.25258 3.40988 3.42757 3.50857 3.63745 4.38861 4.56423 4.58694 4.77802 4.83311 4.94308 4.98402 5.07719 5.22210 5.33030 5.42926 5.48361 5.53520 5.59872 5.65783 5.70510 5.76413 5.90410 5.93084 5.99209 6.07139 6.10912 6.24071 6.28958 6.32841 6.38766 6.47878 6.54961 6.60726 6.64368 6.82322 6.88128 7.02141 7.66777 7.78795 7.93370 8.29831 8.50482 8.75685 9.00790 9.57986 10.24848 11.08782 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.018559 B = 0.004261 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.342251 B = 6569.244114 C = 7368.868244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.135 4.135 4 C 0.154 3.846 5 H 0.109 0.891 6 N -0.733 5.733 7 C 0.710 3.290 8 N -0.873 5.873 9 O -0.563 6.563 10 C 0.499 3.501 11 O -0.518 6.518 12 N -0.593 5.593 13 C 0.055 3.945 14 C 0.124 3.876 15 H 0.103 0.897 16 C -0.137 4.137 17 C 0.104 3.896 18 N -0.607 5.607 19 C -0.343 4.343 20 H 0.078 0.922 21 C -0.015 4.015 22 N -0.909 5.909 23 Si 1.061 2.939 24 H -0.293 1.293 25 H -0.290 1.290 26 H -0.301 1.301 27 C 0.131 3.869 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.397 0.603 36 H 0.392 0.608 37 H 0.412 0.588 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.119 0.881 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.036 0.964 44 H 0.041 0.959 45 H 0.264 0.736 46 H 0.037 0.963 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.046 -13.057 -17.541 22.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.174 4.174 4 C 0.044 3.956 5 H 0.127 0.873 6 N -0.389 5.389 7 C 0.409 3.591 8 N -0.442 5.442 9 O -0.437 6.437 10 C 0.284 3.716 11 O -0.392 6.392 12 N -0.327 5.327 13 C -0.088 4.088 14 C 0.019 3.981 15 H 0.121 0.879 16 C -0.176 4.176 17 C -0.020 4.020 18 N -0.335 5.335 19 C -0.469 4.469 20 H 0.096 0.904 21 C -0.217 4.217 22 N -0.549 5.549 23 Si 0.895 3.105 24 H -0.221 1.221 25 H -0.218 1.218 26 H -0.229 1.229 27 C 0.004 3.996 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.230 0.770 36 H 0.219 0.781 37 H 0.243 0.757 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.137 0.863 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.055 0.945 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.793 -11.720 -16.915 21.670 hybrid contribution 1.868 -0.844 -1.070 2.312 sum -4.925 -12.563 -17.984 22.484 Atomic orbital electron populations 1.21746 0.95692 1.01384 1.02051 1.21451 0.96051 0.96157 1.01705 1.22015 0.92253 0.98139 1.04949 1.20781 0.95918 0.92775 0.86122 0.87301 1.44717 1.57298 1.32605 1.04315 1.15835 0.80406 0.82378 0.80489 1.42979 1.58900 1.34517 1.07776 1.90963 1.41727 1.25230 1.85796 1.20810 0.78946 0.88839 0.82991 1.90709 1.46965 1.65416 1.36144 1.47674 1.63644 1.14305 1.07030 1.22359 1.00526 0.95495 0.90393 1.22270 0.95052 0.80935 0.99805 0.87871 1.22912 0.98932 0.99484 0.96308 1.21813 0.88813 0.97850 0.93546 1.44826 1.09202 1.76078 1.03421 1.19887 1.01435 1.43429 0.82171 0.90430 1.25614 1.05894 0.98021 0.92128 1.70912 1.11931 1.43478 1.28586 0.83927 0.76457 0.76467 0.73664 1.22086 1.21769 1.22865 1.21918 0.93191 0.99070 0.85426 0.92794 0.92878 0.92526 0.92188 0.92044 0.90530 0.88757 0.76955 0.78142 0.75658 0.93215 0.92421 0.86279 0.91219 0.90467 0.94657 0.94132 0.92518 0.94548 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.07 5.82 -26.73 -0.16 -1.22 16 3 C -0.13 -1.61 4.47 -26.73 -0.12 -1.73 16 4 C 0.15 1.88 2.28 -69.08 -0.16 1.72 16 5 H 0.11 1.08 6.31 -51.93 -0.33 0.75 16 6 N -0.73 -7.74 4.66 -59.81 -0.28 -8.02 16 7 C 0.71 9.21 7.59 -86.92 -0.66 8.55 16 8 N -0.87 -7.21 8.88 27.63 0.25 -6.96 16 9 O -0.56 -10.11 13.03 -18.20 -0.24 -10.35 16 10 C 0.50 8.29 6.67 -10.98 -0.07 8.21 16 11 O -0.52 -10.42 13.06 -17.94 -0.23 -10.65 16 12 N -0.59 -9.99 2.91 -171.35 -0.50 -10.49 16 13 C 0.06 0.89 7.83 59.85 0.47 1.35 16 14 C 0.12 2.24 3.66 -65.66 -0.24 2.00 16 15 H 0.10 1.90 7.02 -51.93 -0.36 1.53 16 16 C -0.14 -2.45 6.48 -24.89 -0.16 -2.61 16 17 C 0.10 2.23 3.81 -3.07 -0.01 2.22 16 18 N -0.61 -14.18 1.85 -169.93 -0.31 -14.50 16 19 C -0.34 -9.33 9.93 -15.06 -0.15 -9.48 16 20 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 21 C -0.01 -0.42 5.44 -17.43 -0.09 -0.51 16 22 N -0.91 -27.65 13.70 55.49 0.76 -26.89 16 23 Si 1.06 25.58 24.66 -169.99 -4.19 21.39 16 24 H -0.29 -6.85 6.41 56.52 0.36 -6.49 16 25 H -0.29 -6.30 6.41 56.52 0.36 -5.94 16 26 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 27 C 0.13 2.63 6.43 -2.41 -0.02 2.62 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.53 7.75 -51.93 -0.40 0.13 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.94 6.94 -51.93 -0.36 0.58 16 34 H 0.09 1.41 6.04 -51.93 -0.31 1.09 16 35 H 0.40 2.72 8.84 -40.82 -0.36 2.36 16 36 H 0.39 1.85 8.84 -40.82 -0.36 1.49 16 37 H 0.41 3.13 8.93 -40.82 -0.36 2.76 16 38 H 0.05 0.77 7.41 -51.93 -0.38 0.39 16 39 H 0.06 0.74 5.94 -51.93 -0.31 0.43 16 40 H 0.12 2.36 4.74 -51.93 -0.25 2.11 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.04 0.77 3.26 -51.93 -0.17 0.60 16 44 H 0.04 0.93 6.89 -51.93 -0.36 0.58 16 45 H 0.26 7.97 8.73 -40.82 -0.36 7.61 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 353.83 15.07 5.33 5.33 Total: -1.00 -35.78 353.83 -7.78 -43.56 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -7.36 Total: 7.44 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -1.00 Total: 10.14 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: -0.09 Total: -66.86 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.47 Total: -21.00 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -4.19 Total: 21.39 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.78 -7.78 -43.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494862641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.448 kcal (2) G-P(sol) polarization free energy of solvation -35.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds