Wall clock time and date at job start Fri Apr 10 2020 18:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47324 * 2 1 4 4 C 1.53003 * 109.46830 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47243 * 305.00201 * 4 3 2 6 6 N 1.46500 * 109.47260 * 65.00408 * 4 3 2 7 7 C 1.34772 * 119.99696 * 59.99418 * 6 4 3 8 8 N 1.34780 * 119.99598 * 179.97438 * 7 6 4 9 9 O 1.21580 * 120.00487 * 0.02562 * 7 6 4 10 10 C 1.50706 * 109.46959 * 185.00455 * 4 3 2 11 11 O 1.21281 * 119.99617 * 260.00228 * 10 4 3 12 12 N 1.34775 * 120.00144 * 79.99713 * 10 4 3 13 13 C 1.46503 * 119.99877 * 0.02562 * 12 10 4 14 14 C 1.46496 * 119.99898 * 179.97438 * 12 10 4 15 15 H 1.08996 * 110.88600 * 356.12293 * 14 12 10 16 16 C 1.55157 * 111.00250 * 120.00225 * 14 12 10 17 17 C 1.54330 * 102.94161 * 82.57155 * 16 14 12 18 18 N 1.47012 * 107.26812 * 22.19318 * 17 16 14 19 19 C 1.36943 * 125.64384 * 181.01969 * 18 17 16 20 20 H 1.08008 * 119.99719 * 176.06100 * 19 18 17 21 21 C 1.38810 * 120.00151 * 356.05879 * 19 18 17 22 22 N 1.31620 * 119.99754 * 211.81953 * 21 19 18 23 23 Si 1.86788 * 119.99989 * 31.81656 * 21 19 18 24 24 H 1.48497 * 109.47479 * 275.33220 * 23 21 19 25 25 H 1.48503 * 109.47361 * 35.33676 * 23 21 19 26 26 H 1.48502 * 109.47267 * 155.33214 * 23 21 19 27 27 C 1.47421 * 108.70813 * 1.28888 * 18 17 16 28 28 H 1.09001 * 109.46885 * 59.99942 * 1 2 3 29 29 H 1.09000 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47085 * 299.99842 * 1 2 3 31 31 H 1.09001 * 109.46800 * 239.99724 * 2 1 3 32 32 H 1.09003 * 109.47212 * 120.00956 * 2 1 3 33 33 H 1.09002 * 109.46768 * 60.00777 * 3 2 1 34 34 H 1.08994 * 109.47318 * 300.00212 * 3 2 1 35 35 H 0.97000 * 119.99952 * 240.00200 * 6 4 3 36 36 H 0.97000 * 120.00050 * 0.02562 * 8 7 6 37 37 H 0.96998 * 119.99893 * 180.02562 * 8 7 6 38 38 H 1.08993 * 109.47347 * 269.99642 * 13 12 10 39 39 H 1.09006 * 109.47007 * 30.00151 * 13 12 10 40 40 H 1.08999 * 109.46839 * 149.99630 * 13 12 10 41 41 H 1.09001 * 110.72194 * 324.21045 * 16 14 12 42 42 H 1.08996 * 110.72449 * 200.93501 * 16 14 12 43 43 H 1.09000 * 109.88156 * 262.77194 * 17 16 14 44 44 H 1.09005 * 110.00652 * 141.68354 * 17 16 14 45 45 H 0.97003 * 120.00169 * 354.98040 * 22 21 19 46 46 H 1.09000 * 110.36994 * 94.47949 * 27 18 17 47 47 H 1.09000 * 110.36850 * 216.80581 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 1 3.9330 0.8530 0.8427 6 7 4.0589 0.8585 -1.2509 7 6 3.7338 1.4238 -2.4303 8 7 4.1839 0.8869 -3.5817 9 8 3.0352 2.4185 -2.4557 10 6 4.0724 2.8578 0.1246 11 8 4.4469 3.4568 -0.8612 12 7 4.1055 3.4580 1.3309 13 6 3.6535 2.7342 2.5218 14 6 4.5943 4.8337 1.4514 15 1 4.9549 5.2034 0.4916 16 6 3.4965 5.7654 2.0294 17 6 3.6095 5.5305 3.5505 18 7 4.9600 5.0121 3.8129 19 6 5.4540 4.6569 5.0397 20 1 6.4409 4.2254 5.1201 21 6 4.6865 4.8512 6.1798 22 7 5.2703 5.1244 7.3274 23 14 2.8252 4.7253 6.0854 24 1 2.2624 6.0282 5.6485 25 1 2.4493 3.6713 5.1091 26 1 2.2842 4.3761 7.4235 27 6 5.6964 4.9441 2.5376 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 1.6768 1.9562 0.8901 34 1 1.6767 1.9563 -0.8899 35 1 4.6165 0.0650 -1.2307 36 1 4.7416 0.0935 -3.5615 37 1 3.9502 1.2939 -4.4306 38 1 2.5872 2.9060 2.6685 39 1 3.8349 1.6675 2.3893 40 1 4.2023 3.0905 3.3935 41 1 2.5115 5.4723 1.6661 42 1 3.7054 6.8064 1.7833 43 1 2.8642 4.8020 3.8695 44 1 3.4625 6.4692 4.0847 45 1 6.2381 5.1181 7.3929 46 1 6.2868 5.8487 2.3917 47 1 6.3385 4.0636 2.5167 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494862641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:22 Heat of formation + Delta-G solvation = -50.757472 kcal Electronic energy + Delta-G solvation = -28271.729654 eV Core-core repulsion = 24489.934375 eV Total energy + Delta-G solvation = -3781.795279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.82670 -40.51174 -39.01036 -36.87377 -35.84087 -34.83349 -34.28083 -33.78851 -31.59545 -30.28305 -29.51486 -27.54537 -26.12361 -25.17926 -23.11141 -22.52995 -22.22278 -21.23395 -19.92551 -19.61532 -19.46990 -18.22684 -18.00577 -17.41190 -16.76419 -16.44972 -16.40294 -15.90024 -15.57710 -15.39680 -15.22259 -15.07863 -14.90594 -14.52222 -14.27126 -14.05995 -13.55108 -13.49410 -13.24927 -13.16060 -12.96809 -12.77461 -12.67849 -12.47142 -12.40314 -12.19477 -11.97373 -11.86233 -11.64274 -11.61026 -11.18651 -11.05512 -10.76359 -10.52003 -10.43572 -9.87237 -9.66252 -8.98321 -8.66003 -5.32032 1.46406 1.53394 1.61429 1.73392 1.82257 2.19063 2.47563 2.58226 2.99056 3.39789 3.49839 3.68468 3.74190 3.83931 3.89753 3.96167 4.14179 4.23160 4.30251 4.35596 4.42249 4.57087 4.64864 4.67168 4.75919 4.79403 4.85885 4.89341 4.94264 4.98833 5.04760 5.13743 5.21824 5.26469 5.33883 5.48008 5.49481 5.60616 5.65385 5.98260 6.11910 6.13793 6.50005 6.86392 7.21691 7.24768 7.51894 7.87310 8.18428 8.87380 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.018559 B = 0.004261 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.342251 B = 6569.244114 C = 7368.868244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C -0.128 4.128 4 C 0.158 3.842 5 H 0.141 0.859 6 N -0.721 5.721 7 C 0.702 3.298 8 N -0.854 5.854 9 O -0.616 6.616 10 C 0.494 3.506 11 O -0.555 6.555 12 N -0.595 5.595 13 C 0.056 3.944 14 C 0.133 3.867 15 H 0.102 0.898 16 C -0.126 4.126 17 C 0.103 3.897 18 N -0.618 5.618 19 C -0.324 4.324 20 H 0.048 0.952 21 C -0.068 4.068 22 N -0.948 5.948 23 Si 1.097 2.903 24 H -0.282 1.282 25 H -0.251 1.251 26 H -0.311 1.311 27 C 0.132 3.868 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.417 0.583 36 H 0.411 0.589 37 H 0.416 0.584 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.041 0.959 44 H 0.024 0.976 45 H 0.250 0.750 46 H 0.037 0.963 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.414 -15.191 -19.163 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.167 4.167 4 C 0.048 3.952 5 H 0.159 0.841 6 N -0.378 5.378 7 C 0.400 3.600 8 N -0.424 5.424 9 O -0.495 6.495 10 C 0.281 3.719 11 O -0.432 6.432 12 N -0.328 5.328 13 C -0.086 4.086 14 C 0.028 3.972 15 H 0.120 0.880 16 C -0.165 4.165 17 C -0.021 4.021 18 N -0.346 5.346 19 C -0.452 4.452 20 H 0.066 0.934 21 C -0.264 4.264 22 N -0.591 5.591 23 Si 0.924 3.076 24 H -0.209 1.209 25 H -0.176 1.176 26 H -0.240 1.240 27 C 0.006 3.994 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.254 0.746 36 H 0.241 0.759 37 H 0.248 0.752 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.059 0.941 44 H 0.042 0.958 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.119 -13.932 -18.603 24.619 hybrid contribution 2.424 -0.193 -0.650 2.517 sum -5.695 -14.125 -19.253 24.548 Atomic orbital electron populations 1.21751 0.95637 1.02143 1.01411 1.21419 0.96048 0.94284 1.02883 1.21928 0.91798 0.99680 1.03247 1.20842 0.96162 0.90443 0.87772 0.84139 1.44552 1.57169 1.32889 1.03237 1.16155 0.80095 0.82006 0.81750 1.42773 1.58158 1.34746 1.06706 1.90935 1.44117 1.27765 1.86691 1.21619 0.77903 0.90306 0.82043 1.90696 1.48593 1.66683 1.37271 1.47743 1.63519 1.13798 1.07694 1.22347 1.00364 0.97370 0.88567 1.22049 0.94320 0.82259 0.98593 0.88044 1.22876 0.99657 1.00415 0.93536 1.21873 0.87573 0.96881 0.95803 1.44791 1.10659 1.75979 1.03158 1.19735 1.00002 1.41442 0.83987 0.93376 1.26816 1.09635 0.98195 0.91712 1.71045 1.10987 1.47075 1.29998 0.83533 0.71806 0.78105 0.74118 1.20877 1.17620 1.23977 1.21961 0.93745 0.98742 0.84921 0.94045 0.91404 0.92628 0.91752 0.89995 0.90744 0.91986 0.74559 0.75855 0.75161 0.92295 0.88858 0.89755 0.89599 0.89016 0.94139 0.95759 0.94095 0.94549 0.94082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.91 71.98 0.71 -1.60 16 2 C -0.11 -1.63 5.82 30.59 0.18 -1.45 16 3 C -0.13 -2.73 4.47 30.60 0.14 -2.59 16 4 C 0.16 3.38 2.28 44.25 0.10 3.48 16 5 H 0.14 2.11 6.31 -2.39 -0.02 2.10 16 6 N -0.72 -13.18 4.66 -461.41 -2.15 -15.32 16 7 C 0.70 16.97 7.59 179.05 1.36 18.33 16 8 N -0.85 -12.26 8.88 -184.75 -1.64 -13.90 16 9 O -0.62 -21.86 13.03 18.49 0.24 -21.62 16 10 C 0.49 15.40 6.67 87.66 0.58 15.99 16 11 O -0.56 -21.79 13.06 19.43 0.25 -21.53 16 12 N -0.59 -18.69 2.91 -814.41 -2.37 -21.06 16 13 C 0.06 1.62 7.83 127.77 1.00 2.62 16 14 C 0.13 4.60 3.66 46.46 0.17 4.77 16 15 H 0.10 3.61 7.02 -2.39 -0.02 3.60 16 16 C -0.13 -4.20 6.48 31.78 0.21 -3.99 16 17 C 0.10 4.20 3.81 86.73 0.33 4.53 16 18 N -0.62 -28.51 1.85 -691.55 -1.28 -29.79 16 19 C -0.32 -17.85 9.93 84.03 0.83 -17.01 16 20 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 21 C -0.07 -3.91 5.44 84.86 0.46 -3.45 16 22 N -0.95 -59.26 13.70 21.65 0.30 -58.97 16 23 Si 1.10 50.80 24.66 68.60 1.69 52.49 16 24 H -0.28 -12.49 6.41 99.48 0.64 -11.85 16 25 H -0.25 -9.91 6.41 99.48 0.64 -9.27 16 26 H -0.31 -14.88 7.11 99.48 0.71 -14.17 16 27 C 0.13 5.25 6.43 86.93 0.56 5.81 16 28 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.92 7.75 -2.39 -0.02 0.90 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 1.60 6.94 -2.39 -0.02 1.58 16 34 H 0.06 1.79 6.04 -2.39 -0.01 1.77 16 35 H 0.42 4.15 8.84 -92.71 -0.82 3.33 16 36 H 0.41 2.66 8.84 -92.71 -0.82 1.84 16 37 H 0.42 5.61 8.93 -92.71 -0.83 4.78 16 38 H 0.06 1.60 7.41 -2.39 -0.02 1.59 16 39 H 0.09 1.98 5.94 -2.38 -0.01 1.97 16 40 H 0.08 3.14 4.74 -2.39 -0.01 3.13 16 41 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 43 H 0.04 1.64 3.26 -2.39 -0.01 1.63 16 44 H 0.02 1.09 6.89 -2.38 -0.02 1.07 16 45 H 0.25 15.71 8.73 -92.71 -0.81 14.91 16 46 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -80.85 353.83 0.06 -80.80 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: -1.62 Total: 23.46 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: 6.63 Total: 25.44 kcal Atomic # 7 Polarization: -131.90 SS G_CDS: -7.14 Total: -139.04 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: 0.49 Total: -43.15 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 1.69 Total: 52.49 kcal Total: -80.85 0.06 -80.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494862641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.039 kcal (2) G-P(sol) polarization free energy of solvation -80.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds