Wall clock time and date at job start Fri Apr 10 2020 18:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00313 * 2 1 4 4 H 1.48491 * 109.47400 * 239.99638 * 3 2 1 5 5 H 1.48502 * 109.47219 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47105 * 119.99584 * 3 2 1 7 7 C 1.38811 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00104 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00304 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00276 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47478 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47582 * 174.73995 * 11 10 9 13 13 H 1.08995 * 109.70078 * 301.16910 * 12 11 10 14 14 C 1.53194 * 109.58318 * 61.52366 * 12 11 10 15 15 C 1.53035 * 109.33709 * 174.44099 * 14 12 11 16 16 C 1.53037 * 109.53578 * 298.61322 * 15 14 12 17 17 C 1.53192 * 109.31037 * 61.37137 * 16 15 14 18 18 N 1.46922 * 108.77567 * 305.35977 * 17 16 15 19 19 C 1.34770 * 120.63442 * 233.63187 * 18 17 16 20 20 O 1.21279 * 120.00428 * 174.86762 * 19 18 17 21 21 C 1.50708 * 120.00019 * 354.86851 * 19 18 17 22 22 C 1.52998 * 109.47413 * 179.97438 * 21 19 18 23 23 N 1.46491 * 109.46973 * 179.97438 * 22 21 19 24 24 C 1.34782 * 119.99901 * 179.97438 * 23 22 21 25 25 N 1.34779 * 120.00055 * 180.02562 * 24 23 22 26 26 O 1.21587 * 120.00154 * 0.02562 * 24 23 22 27 27 H 0.96999 * 119.99659 * 0.02562 * 1 2 3 28 28 H 0.97000 * 119.99492 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.47078 * 59.99731 * 10 9 7 30 30 H 1.09000 * 109.47140 * 300.00066 * 10 9 7 31 31 H 1.09007 * 109.46604 * 54.74648 * 11 10 9 32 32 H 1.08997 * 109.47243 * 294.74443 * 11 10 9 33 33 H 1.08998 * 109.49621 * 54.46668 * 14 12 11 34 34 H 1.09004 * 109.49644 * 294.40823 * 14 12 11 35 35 H 1.08999 * 109.46464 * 58.64285 * 15 14 12 36 36 H 1.09002 * 109.45801 * 178.61310 * 15 14 12 37 37 H 1.09012 * 109.49626 * 181.31585 * 16 15 14 38 38 H 1.08998 * 109.50372 * 301.41813 * 16 15 14 39 39 H 1.08999 * 109.58838 * 65.15256 * 17 16 15 40 40 H 1.09006 * 109.58456 * 185.57247 * 17 16 15 41 41 H 1.09003 * 109.46874 * 300.00485 * 21 19 18 42 42 H 1.09000 * 109.46736 * 59.99822 * 21 19 18 43 43 H 1.08995 * 109.47274 * 300.00338 * 22 21 19 44 44 H 1.09004 * 109.46654 * 59.99840 * 22 21 19 45 45 H 0.96998 * 120.00468 * 0.02562 * 23 22 21 46 46 H 0.97002 * 119.99971 * 0.02562 * 25 24 23 47 47 H 0.97004 * 119.99849 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 6 1.8241 -6.1410 -0.1290 13 1 2.4053 -6.1405 -1.0511 14 6 2.7625 -6.3144 1.0694 15 6 3.4160 -7.6967 1.0054 16 6 2.3352 -8.7777 1.0787 17 6 1.3919 -8.6330 -0.1197 18 7 0.8707 -7.2596 -0.1480 19 6 -0.4565 -7.0295 -0.1903 20 8 -0.8779 -5.8945 -0.1194 21 6 -1.4173 -8.1828 -0.3255 22 6 -2.8519 -7.6515 -0.3481 23 7 -3.7857 -8.7725 -0.4802 24 6 -5.1131 -8.5425 -0.5215 25 7 -5.9723 -9.5739 -0.6425 26 8 -5.5355 -7.4047 -0.4496 27 1 -0.4849 0.8401 -0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 2.6840 -3.7141 0.8922 30 1 2.6853 -3.7150 -0.8878 31 1 0.3771 -4.7109 -0.8376 32 1 0.5003 -4.8158 0.9351 33 1 2.1923 -6.2239 1.9940 34 1 3.5344 -5.5453 1.0414 35 1 3.9657 -7.7955 0.0694 36 1 4.1029 -7.8128 1.8438 37 1 2.8031 -9.7621 1.0565 38 1 1.7691 -8.6641 2.0031 39 1 1.9378 -8.8358 -1.0410 40 1 0.5647 -9.3358 -0.0204 41 1 -1.2133 -8.7188 -1.2524 42 1 -1.2941 -8.8593 0.5202 43 1 -3.0556 -7.1157 0.5790 44 1 -2.9753 -6.9746 -1.1936 45 1 -3.4488 -9.6803 -0.5372 46 1 -5.6353 -10.4817 -0.6995 47 1 -6.9276 -9.4083 -0.6726 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496420622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:34 Heat of formation + Delta-G solvation = -51.232571 kcal Electronic energy + Delta-G solvation = -26443.147983 eV Core-core repulsion = 22661.332102 eV Total energy + Delta-G solvation = -3781.815881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.66925 -39.89813 -37.57816 -35.50943 -34.98327 -33.88966 -33.11101 -32.74805 -30.79916 -30.27101 -27.79704 -25.40971 -24.25568 -23.77015 -22.16346 -21.40477 -20.97948 -20.57469 -19.13927 -18.32361 -17.56157 -17.07279 -16.51362 -16.22531 -15.95671 -15.32987 -14.84558 -14.70721 -14.59018 -14.37149 -14.23922 -14.12087 -13.71281 -13.34032 -13.12932 -13.03038 -12.86669 -12.62598 -12.14276 -11.95417 -11.77682 -11.38680 -11.17378 -11.07356 -10.89680 -10.76214 -10.74071 -10.50671 -10.41645 -10.30606 -9.95601 -9.93364 -9.54255 -9.24252 -8.80494 -8.72104 -8.47639 -6.74049 -5.59916 -2.88374 2.51487 2.64297 3.02441 3.03019 3.53245 3.56540 3.58779 4.15922 4.43635 4.46484 4.59382 4.66364 4.72553 4.80286 4.81677 4.99665 5.05582 5.17138 5.25609 5.35425 5.55799 5.58967 5.70040 5.72184 5.75360 5.77835 5.84830 5.95090 5.99328 6.15424 6.20155 6.26756 6.41515 6.42894 6.44726 6.61726 6.64188 6.71102 7.13193 7.23002 7.42517 7.69503 7.82043 8.25313 8.41395 8.58951 9.69093 10.31659 10.66358 11.62866 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.010343 B = 0.003295 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.421803 B = 8495.878835 C =11060.915648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.238 4.238 8 H 0.068 0.932 9 N -0.731 5.731 10 C 0.148 3.852 11 C -0.113 4.113 12 C 0.153 3.847 13 H 0.071 0.929 14 C -0.134 4.134 15 C -0.120 4.120 16 C -0.135 4.135 17 C 0.108 3.892 18 N -0.611 5.611 19 C 0.511 3.489 20 O -0.506 6.506 21 C -0.153 4.153 22 C 0.150 3.850 23 N -0.747 5.747 24 C 0.702 3.298 25 N -0.870 5.870 26 O -0.585 6.585 27 H 0.255 0.745 28 H 0.386 0.614 29 H 0.014 0.986 30 H 0.011 0.989 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.394 0.606 46 H 0.395 0.605 47 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.057 -31.384 -0.393 31.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.370 4.370 8 H 0.086 0.914 9 N -0.375 5.375 10 C 0.020 3.980 11 C -0.151 4.151 12 C 0.050 3.950 13 H 0.089 0.911 14 C -0.172 4.172 15 C -0.158 4.158 16 C -0.174 4.174 17 C -0.015 4.015 18 N -0.346 5.346 19 C 0.298 3.702 20 O -0.381 6.381 21 C -0.193 4.193 22 C 0.025 3.975 23 N -0.403 5.403 24 C 0.400 3.600 25 N -0.438 5.438 26 O -0.462 6.462 27 H 0.065 0.935 28 H 0.220 0.780 29 H 0.032 0.968 30 H 0.029 0.971 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.227 0.773 46 H 0.222 0.778 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -1.359 -29.565 -0.282 29.598 hybrid contribution 0.273 -0.129 -0.044 0.305 sum -1.086 -29.694 -0.326 29.716 Atomic orbital electron populations 1.69677 1.05044 1.25565 1.57728 1.24755 0.95504 0.97595 1.03363 0.86279 0.78470 0.83790 0.77713 1.21389 1.21727 1.21387 1.19191 0.90877 0.84346 1.42540 0.91423 1.42353 1.06083 0.99858 1.89212 1.20796 0.93716 0.86520 0.97017 1.22235 0.97385 0.90668 1.04776 1.21357 0.89564 0.86236 0.97834 0.91103 1.22063 0.99287 0.96983 0.98853 1.21535 0.97409 0.94751 1.02109 1.21923 0.97551 0.99318 0.98559 1.21718 0.98024 0.83026 0.98769 1.48176 1.05500 1.07005 1.73922 1.20260 0.82533 0.90288 0.77139 1.90938 1.77297 1.22336 1.47498 1.21875 0.94598 0.98515 1.04332 1.20939 0.84756 0.87398 1.04370 1.45062 1.04770 1.10406 1.80099 1.15964 0.81309 0.84946 0.77764 1.42994 1.10015 1.08449 1.82389 1.91041 1.77338 1.20700 1.57114 0.93536 0.78024 0.96800 0.97131 0.89509 0.90941 0.91419 0.89997 0.91828 0.91760 0.90954 0.91475 0.91360 0.90026 0.88548 0.88626 0.90324 0.90275 0.77327 0.77791 0.75365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.28 13.06 55.49 0.72 -29.56 16 2 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 3 Si 0.91 23.62 29.55 -169.99 -5.02 18.60 16 4 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.24 -7.17 9.99 -15.06 -0.15 -7.32 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.73 -20.54 5.60 -59.91 -0.34 -20.88 16 10 C 0.15 3.26 5.80 -4.05 -0.02 3.24 16 11 C -0.11 -2.13 3.25 -26.73 -0.09 -2.22 16 12 C 0.15 2.09 3.00 -67.56 -0.20 1.89 16 13 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.13 -1.60 4.89 -26.61 -0.13 -1.73 16 15 C -0.12 -1.03 5.88 -26.69 -0.16 -1.19 16 16 C -0.14 -0.92 6.08 -26.61 -0.16 -1.08 16 17 C 0.11 0.74 6.33 -3.71 -0.02 0.72 16 18 N -0.61 -6.85 2.97 -165.17 -0.49 -7.34 16 19 C 0.51 6.53 7.61 -10.98 -0.08 6.45 16 20 O -0.51 -9.12 11.39 5.56 0.06 -9.06 16 21 C -0.15 -1.21 4.22 -27.88 -0.12 -1.33 16 22 C 0.15 1.64 4.96 -4.05 -0.02 1.62 16 23 N -0.75 -6.07 5.56 -65.23 -0.36 -6.43 16 24 C 0.70 7.69 8.84 -86.91 -0.77 6.92 16 25 N -0.87 -5.07 8.88 27.64 0.25 -4.82 16 26 O -0.59 -9.96 17.18 5.29 0.09 -9.86 16 27 H 0.25 7.98 8.31 -40.82 -0.34 7.64 16 28 H 0.39 11.65 7.67 -40.82 -0.31 11.34 16 29 H 0.01 0.31 6.89 -51.93 -0.36 -0.05 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 1.85 6.38 -51.92 -0.33 1.52 16 32 H 0.07 1.51 7.10 -51.93 -0.37 1.14 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.04 6.91 -51.93 -0.36 0.68 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.35 5.96 -51.93 -0.31 0.05 16 41 H 0.10 0.53 8.11 -51.93 -0.42 0.11 16 42 H 0.10 0.51 7.48 -51.93 -0.39 0.13 16 43 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 44 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 45 H 0.39 1.55 8.49 -40.82 -0.35 1.21 16 46 H 0.39 0.83 8.84 -40.82 -0.36 0.47 16 47 H 0.41 2.18 8.93 -40.82 -0.36 1.81 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -40.34 372.10 -9.19 -49.53 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -7.69 Total: 8.84 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -2.02 Total: 5.38 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -0.22 Total: -69.03 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.15 Total: -18.92 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.02 Total: 18.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -40.34 -9.19 -49.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496420622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.703 kcal (2) G-P(sol) polarization free energy of solvation -40.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds